DK955575 |
Clone id |
TST39A01NGRL0023_H13 |
Library |
TST39 |
Length |
537 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_H13. 5' end sequence. |
Accession |
DK955575 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2041Contig1 |
Sequence |
ATCATCAGTGGTTGCTCTTCTGCCGCATTCGATTTAGTGTCGAACACAATTGTGTATCTC GGCTGTGATACAGGAAGAGTTTCTTGGAGCTGTATCTATGGCAGCTGCTCTTGCAGGAGG CTTGTCCGCTGTGGCCAAGCCAAGCTTTAACAACGACAGAGGTCTCTTCCCACAACGGCT TGCGTAGCCTTTCTTCCTCTGCTTCTTATGCTTCCCTTTCCCAAAGAGACTTCTTTTCGA CCAATTGCTCCAGTTTGCGAAGGACGCCCATTGTCCAGACCACGTCTATGGCGAAGGAGC TGTATTTCAACTGGGATGGATCAACCATGATGAAACTGCATGCAGGTGTAAACAAACTGT CAGATTTACTACGTGTAACTTTAGGTCCCAAAGGTAGGAACGTTGTGCTGGAGAGCAAGT ACGGTGCTCCCAAAATTGTCAACGATGGCGTCACTGTTGCCAAATAGGTTGAGCTCGAAG ATCCAGTTGAAAACATTGGCGCGAAGCTTGTTAGACAAACTGCTGCTAAAACAAACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P08927 |
Definition |
sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum |
Align length |
93 |
Score (bit) |
140.0 |
E-value |
5.0e-33 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NV22 |
Definition |
tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
92 |
Score (bit) |
145.0 |
E-value |
1.0e-33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955575|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_H13, 5' (537 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea... 145 1e-33 tr|A7P0B1|A7P0B1_VITVI Chromosome chr6 scaffold_3, whole genome ... 143 5e-33 tr|A7Y7L7|A7Y7L7_PRUDU Putative GloEL protein:chaperonin, 60kDa ... 140 3e-32 tr|P93570|P93570_SOLTU Chaperonin-60 beta subunit OS=Solanum tub... 136 8e-31 tr|A7P765|A7P765_VITVI Chromosome chr9 scaffold_7, whole genome ... 136 8e-31 tr|Q0W9E2|Q0W9E2_SOLCO Beta chaperonin 60 OS=Solanum commersonii... 135 1e-30 tr|A9PF58|A9PF58_POPTR Putative uncharacterized protein OS=Popul... 135 1e-30 tr|Q9LWT6|Q9LWT6_ORYSJ Os06g0114000 protein OS=Oryza sativa subs... 135 2e-30 tr|A3B7Q6|A3B7Q6_ORYSJ Putative uncharacterized protein OS=Oryza... 135 2e-30 tr|A9RLL2|A9RLL2_PHYPA Predicted protein OS=Physcomitrella paten... 134 2e-30 tr|A9RKJ5|A9RKJ5_PHYPA Predicted protein OS=Physcomitrella paten... 134 2e-30 tr|Q6ZFJ9|Q6ZFJ9_ORYSJ Os02g0102900 protein OS=Oryza sativa subs... 134 3e-30 tr|B8AGV6|B8AGV6_ORYSI Putative uncharacterized protein OS=Oryza... 134 3e-30 tr|A3A263|A3A263_ORYSJ Putative uncharacterized protein OS=Oryza... 134 3e-30 tr|Q9LJE4|Q9LJE4_ARATH GloEL protein; chaperonin, 60 kDa OS=Arab... 134 4e-30 tr|P93571|P93571_SOLTU Chaperonin-60 beta subunit (Fragment) OS=... 134 4e-30 tr|B6THN2|B6THN2_MAIZE RuBisCO large subunit-binding protein sub... 134 4e-30 tr|B6SH83|B6SH83_MAIZE RuBisCO large subunit-binding protein sub... 134 4e-30 tr|Q9FHA9|Q9FHA9_ARATH RuBisCO subunit binding-protein beta subu... 132 1e-29 tr|Q0WRG9|Q0WRG9_ARATH RuBisCO subunit binding-protein beta subu... 132 1e-29 tr|A9TNZ2|A9TNZ2_PHYPA Predicted protein OS=Physcomitrella paten... 132 1e-29 tr|Q015D7|Q015D7_OSTTA RUBISCO SUBUNIT BINDING-PROTEIN BETA-2 SU... 125 1e-27 tr|A8ITH8|A8ITH8_CHLRE Chaperonin 60B2 OS=Chlamydomonas reinhard... 121 2e-26 tr|A7PNB9|A7PNB9_VITVI Chromosome chr1 scaffold_22, whole genome... 121 2e-26 tr|A4S076|A4S076_OSTLU Chaperonin 60 beta chain, chloroplast OS=... 119 1e-25 tr|A8JE91|A8JE91_CHLRE Chaperonin 60B1 OS=Chlamydomonas reinhard... 118 2e-25 tr|Q9C667|Q9C667_ARATH Chaperonin, putative OS=Arabidopsis thali... 115 1e-24 tr|Q56XN6|Q56XN6_ARATH Chaperonin OS=Arabidopsis thaliana GN=At1... 115 1e-24 tr|B8HWB3|B8HWB3_9CHRO Chaperonin GroEL OS=Cyanothece sp. PCC 74... 106 7e-22 tr|B8BJN0|B8BJN0_ORYSI Putative uncharacterized protein OS=Oryza... 106 9e-22
>tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 617
Score = 145 bits (367), Expect = 1e-33 Identities = 75/92 (81%), Positives = 80/92 (86%) Frame = +3
Query: 261 RTPIVQTTSMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPKIV 440 R +V T +MAKELYFN DGS KL AGVNKL+DL+ VTLGPKGRNVVLESKYG+PKIV Sbjct: 63 REQVVNTRAMAKELYFNKDGSATKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIV 122
Query: 441 NDGVTVAK*VELEDPVENIGAKLVRQTAAKTN 536 NDGVTVAK VELEDPVENIGAKLVRQ AAKTN Sbjct: 123 NDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 154
>tr|A7P0B1|A7P0B1_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024837001 PE=3 SV=1 Length = 606
Score = 143 bits (361), Expect = 5e-33 Identities = 74/94 (78%), Positives = 81/94 (86%) Frame = +3
Query: 255 LRRTPIVQTTSMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPK 434 LRRT + +MAK+LYFN DGS + KL GVNKL+DL+ VTLGPKGRNVVLESKYG+PK Sbjct: 52 LRRTRSPRINAMAKDLYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPK 111
Query: 435 IVNDGVTVAK*VELEDPVENIGAKLVRQTAAKTN 536 IVNDGVTVAK VELEDPVENIGAKLVRQ AAKTN Sbjct: 112 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 145
>tr|A7Y7L7|A7Y7L7_PRUDU Putative GloEL protein:chaperonin, 60kDa (Fragment) OS=Prunus dulcis PE=2 SV=1 Length = 166
Score = 140 bits (354), Expect = 3e-32 Identities = 73/94 (77%), Positives = 81/94 (86%) Frame = +3
Query: 255 LRRTPIVQTTSMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPK 434 LRRT + +MAKEL+FN DGS + KL GVNKL+DL+ VTLGPKGRNVVLESKYG+PK Sbjct: 27 LRRTRSPRICAMAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPK 86
Query: 435 IVNDGVTVAK*VELEDPVENIGAKLVRQTAAKTN 536 IVNDGVTVAK VELEDPVENIGAKLVR+ AAKTN Sbjct: 87 IVNDGVTVAKEVELEDPVENIGAKLVRRAAAKTN 120
>tr|P93570|P93570_SOLTU Chaperonin-60 beta subunit OS=Solanum tuberosum PE=2 SV=1 Length = 599
Score = 136 bits (342), Expect = 8e-31 Identities = 73/102 (71%), Positives = 82/102 (80%) Frame = +3
Query: 231 FFSTNCSSLRRTPIVQTTSMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVL 410 F S +LR++ + AKEL+FN DGS + KL GVNKL+DL+ VTLGPKGRNVVL Sbjct: 35 FGSKRNVALRKSRRPTILAAAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVL 94
Query: 411 ESKYGAPKIVNDGVTVAK*VELEDPVENIGAKLVRQTAAKTN 536 ESKYGAPKIVNDGVTVA+ VELEDPVENIGAKLVRQ AAKTN Sbjct: 95 ESKYGAPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 136
>tr|A7P765|A7P765_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034341001 PE=3 SV=1 Length = 634
Score = 136 bits (342), Expect = 8e-31 Identities = 68/84 (80%), Positives = 76/84 (90%) Frame = +3
Query: 285 SMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 464 +MAKELYFN DGS + KL GVNKL+DL+ VTLGPKGRNVVLESKYG+PKIVNDGVTVA+ Sbjct: 63 AMAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAR 122
Query: 465 *VELEDPVENIGAKLVRQTAAKTN 536 VELEDPVENIGA+LVRQ A+KTN Sbjct: 123 EVELEDPVENIGARLVRQAASKTN 146
>tr|Q0W9E2|Q0W9E2_SOLCO Beta chaperonin 60 OS=Solanum commersonii GN=cbn60 PE=2 SV=1 Length = 600
Score = 135 bits (341), Expect = 1e-30 Identities = 72/102 (70%), Positives = 83/102 (81%) Frame = +3
Query: 231 FFSTNCSSLRRTPIVQTTSMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVL 410 F S +LR++ + + AKEL+FN DGS + KL GVNKL+DL+ VTLGPKGRNVVL Sbjct: 35 FGSKRNVALRKSRRLTILAAAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVL 94
Query: 411 ESKYGAPKIVNDGVTVAK*VELEDPVENIGAKLVRQTAAKTN 536 ESKYGAPKIVNDGVTVA+ VELEDPV+NIGAKLVRQ AAKTN Sbjct: 95 ESKYGAPKIVNDGVTVAREVELEDPVKNIGAKLVRQAAAKTN 136
>tr|A9PF58|A9PF58_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 607
Score = 135 bits (340), Expect = 1e-30 Identities = 69/82 (84%), Positives = 74/82 (90%) Frame = +3
Query: 291 AKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPKIVNDGVTVAK*V 470 AKEL+FN DGS + KL GVNKL+DL+ VTLGPKGRNVVLESKYG+PKIVNDGVTVAK V Sbjct: 63 AKELHFNKDGSAIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEV 122
Query: 471 ELEDPVENIGAKLVRQTAAKTN 536 ELEDPVENIGAKLVRQ AAKTN Sbjct: 123 ELEDPVENIGAKLVRQAAAKTN 144
>tr|Q9LWT6|Q9LWT6_ORYSJ Os06g0114000 protein OS=Oryza sativa subsp. japonica GN=P0541H01.20 PE=2 SV=1 Length = 601
Score = 135 bits (339), Expect = 2e-30 Identities = 68/82 (82%), Positives = 74/82 (90%) Frame = +3
Query: 291 AKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPKIVNDGVTVAK*V 470 AKELYFN DGS + KL GVNKL+DL+ VTLGPKGRNVVLESKYG+P+IVNDGVTVA+ V Sbjct: 57 AKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREV 116
Query: 471 ELEDPVENIGAKLVRQTAAKTN 536 ELEDPVENIGAKLVRQ AAKTN Sbjct: 117 ELEDPVENIGAKLVRQAAAKTN 138
>tr|A3B7Q6|A3B7Q6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_019078 PE=3 SV=1 Length = 609
Score = 135 bits (339), Expect = 2e-30 Identities = 68/82 (82%), Positives = 74/82 (90%) Frame = +3
Query: 291 AKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPKIVNDGVTVAK*V 470 AKELYFN DGS + KL GVNKL+DL+ VTLGPKGRNVVLESKYG+P+IVNDGVTVA+ V Sbjct: 57 AKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREV 116
Query: 471 ELEDPVENIGAKLVRQTAAKTN 536 ELEDPVENIGAKLVRQ AAKTN Sbjct: 117 ELEDPVENIGAKLVRQAAAKTN 138
>tr|A9RLL2|A9RLL2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_176210 PE=3 SV=1 Length = 604
Score = 134 bits (338), Expect = 2e-30 Identities = 68/86 (79%), Positives = 76/86 (88%) Frame = +3
Query: 279 TTSMAKELYFNWDGSTMMKLHAGVNKLSDLLRVTLGPKGRNVVLESKYGAPKIVNDGVTV 458 T AKEL+FN DGS + K+ AGV+KL+DL+ VTLGPKGRNVVLESKYG+PKIVNDGVTV Sbjct: 56 TVKAAKELHFNKDGSAIKKMQAGVDKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 115
Query: 459 AK*VELEDPVENIGAKLVRQTAAKTN 536 AK VELEDPVENIGAKLVRQ +AKTN Sbjct: 116 AKEVELEDPVENIGAKLVRQASAKTN 141
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