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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955576
Clone id TST39A01NGRL0023_H15
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_H15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCAGTCTATAAAGAGGCCAAGCAATTAAGATGTCTAGTTGTGGAAATTCAAACTGTAGCT
GCGGCTCTTCGTGCTCGTGTGGAAGTGGCTGCAAATGCGGCAAGAGGACCTCTGATATAA
TGGATGCTTCTATATTCGAGTGCAGCATGCCGAGGACAGAAAGATCGATCATGGCATGCA
CTTGGATCACTGCCGGATTCCAGTATTACCTCGATGGGCCTTCTCCTTTTCCAGCTTAAT
GAAACACTGCCTTTTCACACCCTTCTACCATTATATTGACCGCCCTCAGCATCGTCCGAC
GCCTTGTTACTACGTTAGAATAAGCGCAGATTCAAAAATCTGCCTTCTCAATAACCCACG
TGGCAACGCTTCGTTTCCTACTTGTACATATATATATATATATATATGCAAATTGGACAT
ACCAGTAGAAATTTCCAAATTTGCAAGATTTTTGAACTATTTTCTAGTATGTTTTAACGA
TTTTTTTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7TN38
Definition sp|Q7TN38|MRGRH_RAT Mas-related G-protein coupled receptor member H OS=Rattus norvegicus
Align length 79
Score (bit) 32.7
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955576|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_H15, 5'
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TN38|MRGRH_RAT Mas-related G-protein coupled receptor membe...    33   0.93 
sp|P40541|SCC3_YEAST Cohesin subunit SCC3 OS=Saccharomyces cerev...    31   3.5  
sp|Q9HAT0|ROP1A_HUMAN Ropporin-1A OS=Homo sapiens GN=ROPN1 PE=1 ...    30   6.0  
sp|Q99MT8|MRGRH_MOUSE Mas-related G-protein coupled receptor mem...    30   7.9  

>sp|Q7TN38|MRGRH_RAT Mas-related G-protein coupled receptor member H
           OS=Rattus norvegicus GN=Mrgprh PE=3 SV=1
          Length = 321

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +2

Query: 260 PFYHYIDRPQHRPTPCYYVRISADSKICLLNN----PRGNASFPTCTYIYIYICKLD--I 421
           P +++  RP+H+ T    +  +    +  L N          FP C Y+YI+ C L   +
Sbjct: 135 PIWYHCRRPKHQSTVACTLLWALSVLVSGLENFFCILEVKPQFPECRYVYIFSCTLTFLV 194

Query: 422 PVEISKFARFLNYFLVCFN 478
            V +  F+  + +  VC N
Sbjct: 195 FVPLMVFSNLILFIQVCCN 213


>sp|P40541|SCC3_YEAST Cohesin subunit SCC3 OS=Saccharomyces cerevisiae
            GN=IRR1 PE=1 SV=1
          Length = 1150

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
 Frame = +2

Query: 239  MKHCLFTPFYHYIDRPQHRPTPCYYVRISADSKICLL---------NNPRGNASFPTCTY 391
            MK+ +F  F H+I   + +     ++   A  KI L          NN R +    TC+ 
Sbjct: 746  MKYDIFAKFIHHIHHFEKKELQEKFLNQIATLKIHLKKFLQEKMDPNNSRDDYKDLTCSL 805

Query: 392  IYIYICKL-----DIPVEISK--FARFLNYFL----VCFNDF 484
              +YI KL     D P+E+ +     FLN F+    + F DF
Sbjct: 806  YELYINKLTILGRDYPIEVDEELLQLFLNNFVSRIPIMFQDF 847


>sp|Q9HAT0|ROP1A_HUMAN Ropporin-1A OS=Homo sapiens GN=ROPN1 PE=1
           SV=2
          Length = 212

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
 Frame = +2

Query: 314 VRISADSKICLLNNPRGNASFPTCTYIYIYICKLDIPVEISKFARFLNYF---------L 466
           ++I  +   C  N       F T  ++Y YI K+D  +  S  +R LNY          +
Sbjct: 138 LKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSRMLNYMEQEVIGPDGI 197

Query: 467 VCFNDF 484
           +  NDF
Sbjct: 198 ITVNDF 203


>sp|Q99MT8|MRGRH_MOUSE Mas-related G-protein coupled receptor member
           H OS=Mus musculus GN=Mrgprh PE=2 SV=1
          Length = 321

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = +2

Query: 260 PFYHYIDRPQHRPTPCYYVRISADSKICLLNN----PRGNASFPTCTYIYIYICKLD--I 421
           P ++   RP+H+      +  +    +  L N          FP C Y+YI+ C L   +
Sbjct: 135 PIWYQCQRPKHQSAVACMLLWALSVLVSGLENFFCILEVKPQFPECRYVYIFSCILTFLV 194

Query: 422 PVEISKFARFLNYFLVCFN 478
            V +  F+  + +  VC N
Sbjct: 195 FVPLMIFSNLILFIQVCCN 213
tr_hit_id A7QZ97
Definition tr|A7QZ97|A7QZ97_VITVI Chromosome undetermined scaffold_268, whole genome shotgun sequence OS=Vitis vinifera
Align length 44
Score (bit) 39.7
E-value 0.078
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955576|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_H15, 5'
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QZ97|A7QZ97_VITVI Chromosome undetermined scaffold_268, who...    40   0.078
tr|B7FLS2|B7FLS2_MEDTR Putative uncharacterized protein OS=Medic...    39   0.17 
tr|A7QZA2|A7QZA2_VITVI Chromosome undetermined scaffold_268, who...    39   0.17 
tr|Q9XH51|Q9XH51_ORYSA CER1 OS=Oryza sativa GN=CER1 PE=2 SV=1          37   0.66 
tr|Q9FWK6|Q9FWK6_ORYSA Putative CER1 OS=Oryza sativa GN=OSJNBa00...    37   0.66 
tr|Q7XPZ4|Q7XPZ4_ORYSJ OSJNBa0004N05.14 protein OS=Oryza sativa ...    37   0.66 
tr|Q7XDI3|Q7XDI3_ORYSJ Os10g0471100 protein OS=Oryza sativa subs...    37   0.66 
tr|Q109K1|Q109K1_ORYSJ CER1 protein, putative, expressed OS=Oryz...    37   0.66 
tr|B8BHF1|B8BHF1_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.66 
tr|B8ARQ6|B8ARQ6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.66 
tr|B8A2T5|B8A2T5_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.66 
tr|B6TFH3|B6TFH3_MAIZE CER1 OS=Zea mays PE=2 SV=1                      37   0.66 
tr|A6XBA5|A6XBA5_WHEAT TCER1 (Fragment) OS=Triticum aestivum PE=...    37   0.66 
tr|A5BHB6|A5BHB6_VITVI Putative uncharacterized protein OS=Vitis...    37   0.66 
tr|A3C5M9|A3C5M9_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.66 
tr|A3AVI3|A3AVI3_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.66 
tr|Q6K9F6|Q6K9F6_ORYSJ Os02g0621300 protein OS=Oryza sativa subs...    36   0.86 
tr|B8AFI3|B8AFI3_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.86 
tr|A3A960|A3A960_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.86 
tr|A9RQD0|A9RQD0_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A7QDP3|A7QDP3_VITVI Chromosome chr15 scaffold_82, whole genom...    36   1.1  
tr|A5AWD7|A5AWD7_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|Q6VZW7|Q6VZW7_CNPV CNPV030 ankyrin repeat protein OS=Canarypo...    35   1.4  
tr|B8BHF0|B8BHF0_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A7QDP2|A7QDP2_VITVI Chromosome chr15 scaffold_82, whole genom...    34   3.3  
tr|A5C4V6|A5C4V6_VITVI Putative uncharacterized protein OS=Vitis...    34   3.3  
tr|Q6RCI6|Q6RCI6_MAIZE Gl1 protein OS=Zea mays PE=2 SV=1               34   4.3  
tr|Q6RBX9|Q6RBX9_MAIZE Glossy1 protein OS=Zea mays PE=4 SV=1           34   4.3  
tr|B6UE76|B6UE76_MAIZE CER1 OS=Zea mays PE=2 SV=1                      34   4.3  
tr|B5L347|B5L347_WHEAT TCER1 OS=Triticum aestivum PE=2 SV=1            34   4.3  

>tr|A7QZ97|A7QZ97_VITVI Chromosome undetermined scaffold_268, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010554001 PE=4 SV=1
          Length = 618

 Score = 39.7 bits (91), Expect = 0.078
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P+W FS    +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNMGHCNFELVPKWLFSIFPFLKYLMYTPSFHSLHHTQFR 256


>tr|B7FLS2|B7FLS2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 385

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   +L HC   ++P+W F     +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNLGHCNFEIVPKWLFDIFPPLKYLMYTPSFHSLHHTQFR 256


>tr|A7QZA2|A7QZA2_VITVI Chromosome undetermined scaffold_268, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010560001 PE=4 SV=1
          Length = 256

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRP 286
           ID   ++ HC   ++P+W FS    +K+ ++TP +H    P
Sbjct: 213 IDFMNNMGHCNFELVPKWLFSIFPFLKYLMYTPSFHSTSHP 253


>tr|Q9XH51|Q9XH51_ORYSA CER1 OS=Oryza sativa GN=CER1 PE=2 SV=1
          Length = 621

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P W F++   +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNMGHCNFELVPSWLFTWFPPLKYLMYTPSFHSLHHTQFR 256


>tr|Q9FWK6|Q9FWK6_ORYSA Putative CER1 OS=Oryza sativa
           GN=OSJNBa0079L16.17 PE=4 SV=1
          Length = 621

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P W F++   +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNMGHCNFELVPSWLFTWFPPLKYLMYTPSFHSLHHTQFR 256


>tr|Q7XPZ4|Q7XPZ4_ORYSJ OSJNBa0004N05.14 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0004N05.14 PE=4 SV=2
          Length = 597

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P+W F     +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNMGHCNFELMPKWMFQTFPPLKYLIYTPSFHSLHHTQFR 256


>tr|Q7XDI3|Q7XDI3_ORYSJ Os10g0471100 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0471100 PE=4 SV=1
          Length = 621

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P W F++   +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNMGHCNFELVPSWLFTWFPPLKYLMYTPSFHSLHHTQFR 256


>tr|Q109K1|Q109K1_ORYSJ CER1 protein, putative, expressed OS=Oryza
           sativa subsp. japonica GN=LOC_Os10g33250 PE=4 SV=1
          Length = 595

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P W F++   +K+ ++TP +H +   Q R
Sbjct: 187 IDFMNNMGHCNFELVPSWLFTWFPPLKYLMYTPSFHSLHHTQFR 230


>tr|B8BHF1|B8BHF1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33995 PE=4 SV=1
          Length = 621

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P W F++   +K+ ++TP +H +   Q R
Sbjct: 213 IDFMNNMGHCNFELVPSWLFTWFPPLKYLMYTPSFHSLHHTQFR 256


>tr|B8ARQ6|B8ARQ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16615 PE=4 SV=1
          Length = 561

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 164 IDHGMHLDHCRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 295
           ID   ++ HC   ++P+W F     +K+ ++TP +H +   Q R
Sbjct: 141 IDFMNNMGHCNFELMPKWMFQTFPPLKYLIYTPSFHSLHHTQFR 184