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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955584
Clone id TST39A01NGRL0023_H23
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_H23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCAACACAGATCATCATCTCCATCTTTGTCCCACAAAATTTGGACACTCCTGTAGATTAA
TCCCACATAATTTCCCAGTCCACCTGTGGATCAGATCATGCTAAAATCCTTCTACAGACT
GAATTACATAGCCAGATCGGCAAGCTTGCGCCGCGCAGCTAGTCTCTATCGATCAATATC
AAACTTCCCAGCCCTCTAATTCTACATGAAACCATCATCACTGTTCGCTCCGCGGCTCAC
TTGAAAAGATTTGGACCTTGTGTCGATCCATCCATCCTGATTTTTATCAGCAAATTATTA
TCACTGTTATTTAGCCAATTTGTGGACAATAGAATGGGAGAAACCATATCTTGGATTGCA
GTGAACAAGAGTGGAGAAGTCTGCCTCGACTCCGACCTCCCGCCCCTTCCGAGAGGATGG
GAAAGGTGCCTTGATCTGCAGTCAGGAGTCATGTACTTGAAGCAAATGAACCCACAACCA
GGTGAATCCAAAAGTGGTGGGATTGGCCAGAGCAGAGCAACAACCCATAAGAGACAGCGA
GTATTGCTCGGCAATGACGACGGCGAAGGCGATCCCACGCTGCAA
■■Homology search results ■■ -
sp_hit_id P21783
Definition sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog OS=Xenopus laevis
Align length 38
Score (bit) 36.6
E-value 0.094
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955584|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_H23, 5'
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog OS=...    37   0.094
sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 O...    34   0.61 
sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=...    33   0.80 
sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 O...    33   0.80 
sp|Q9VW71|FAT2_DROME Putative fat-like cadherin-related tumor su...    33   1.0  
sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN...    33   1.4  
sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dicty...    31   3.9  
sp|Q90Y57|JAG1A_DANRE Protein jagged-1a OS=Danio rerio GN=jag1a ...    31   3.9  
sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 O...    31   5.2  
sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3         30   8.8  
sp|Q9KTA6|SYQ_VIBCH Glutaminyl-tRNA synthetase OS=Vibrio cholera...    30   8.9  
sp|A5F2T1|SYQ_VIBC3 Glutaminyl-tRNA synthetase OS=Vibrio cholera...    30   8.9  

>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog
           OS=Xenopus laevis GN=notch1 PE=1 SV=3
          Length = 2524

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           CA+  C +G  I  ++G+       +TGKLC IN+ EC
Sbjct: 644 CASNLCDNGKCIDKIDGYECTCEPGYTGKLCNININEC 681


>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1
           OS=Homo sapiens GN=NOTCH1 PE=1 SV=4
          Length = 2555

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           CA+  C SG  +  ++G+       +TG +C IN+ EC
Sbjct: 645 CASSPCDSGTCLDKIDGYECACEPGYTGSMCNINIDEC 682


>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1
           OS=Rattus norvegicus GN=Notch1 PE=1 SV=2
          Length = 2531

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           CA+  C SG  +  ++G+       +TG +C +N+ EC
Sbjct: 645 CASNPCDSGTCLDKIDGYECACEPGYTGSMCNVNIDEC 682


>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1
           OS=Mus musculus GN=Notch1 PE=1 SV=2
          Length = 2531

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           CA+  C SG  +  ++G+       +TG +C +N+ EC
Sbjct: 645 CASNPCDSGTCLDKIDGYECACEPGYTGSMCNVNIDEC 682


>sp|Q9VW71|FAT2_DROME Putative fat-like cadherin-related tumor
            suppressor homolog OS=Drosophila melanogaster GN=fat2
            PE=1 SV=2
          Length = 4705

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 157  CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQECPN 38
            C    C++G + +  +G  H +   +TG  C I++ EC N
Sbjct: 4210 CTPNPCKNGGICEEGDGISHCMCRGYTGPTCEIDVDECEN 4249


>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4
           PE=1 SV=1
          Length = 706

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = -2

Query: 533 LLWVVALLWPIPPLLD-----SPGCGFIC-FKYMTP 444
           LLW+ +L+W +PPL       S G G  C F YMTP
Sbjct: 208 LLWIWSLVWALPPLFGWSAYVSEGFGTSCTFDYMTP 243


>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog
           OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1
          Length = 550

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 443 DCRSRHLSHPLGRGGRSESRQTSPLLFTAIQDMVSPILLSTNWLNNSDNN 294
           D +S  L  P  R   + S ++SP L ++   + SP L + N  NN++NN
Sbjct: 207 DIQSTSLKKPSARKSNTTSPKSSPFLSSSAGSIQSPPLNNNNNNNNNNNN 256


>sp|Q90Y57|JAG1A_DANRE Protein jagged-1a OS=Danio rerio GN=jag1a
           PE=2 SV=1
          Length = 1242

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 166 ETSCAAQACR-SGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           E  C+   C  SG  +  V+GF      +WTGK C I+  EC
Sbjct: 376 EDDCSPNPCNHSGVCVDLVDGFKCICPVQWTGKTCLIDANEC 417


>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1
           OS=Danio rerio GN=notch1a PE=2 SV=1
          Length = 2437

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           CA+Q C +G  I  +  F  +    ++G LC +++ EC
Sbjct: 493 CASQPCLNGKCIDKINSFHCECPKGFSGSLCQVDVDEC 530



 Score = 30.8 bits (68), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           CA+  C  G     V  F  D    +TG+LC  N+ EC
Sbjct: 568 CASSPCHYGVCRDGVASFTCDCRPGYTGRLCETNINEC 605


>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3
          Length = 3623

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 157 CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           C +  C +G  I +V G+       WTG  C  N+ EC
Sbjct: 399 CLSHPCLNGQCIDTVSGYFCKCDSGWTGVNCTENINEC 436
tr_hit_id A9RXE5
Definition tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 41.6
E-value 0.033
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955584|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_H23, 5'
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.033
tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.28 
tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.37 
tr|B6LIQ9|B6LIQ9_BRAFL Putative uncharacterized protein (Fragmen...    37   1.1  
tr|Q0V4Z9|Q0V4Z9_PHANO Putative uncharacterized protein OS=Phaeo...    36   1.8  
tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.8  
tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed O...    35   3.1  
tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.1  
tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.1  
tr|A9RQ85|A9RQ85_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.1  
tr|A2ZJ82|A2ZJ82_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.1  
tr|A2RUV0|A2RUV0_XENTR Notch1 protein OS=Xenopus tropicalis GN=n...    35   4.0  
tr|B7GAE9|B7GAE9_PHATR Predicted protein OS=Phaeodactylum tricor...    35   4.1  
tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whol...    35   4.1  
tr|A9SJA3|A9SJA3_PHYPA Predicted protein OS=Physcomitrella paten...    34   5.3  
tr|B3RWU9|B3RWU9_TRIAD Putative uncharacterized protein (Fragmen...    34   6.9  
tr|B7WP15|B7WP15_HUMAN Putative uncharacterized protein NOTCH1 O...    34   6.9  
tr|Q10QM7|Q10QM7_ORYSJ Os03g0191200 protein OS=Oryza sativa subs...    34   7.0  
tr|A7Q9R8|A7Q9R8_VITVI Chromosome chr5 scaffold_67, whole genome...    34   7.0  
tr|A2XDF1|A2XDF1_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.0  
tr|Q8K428|Q8K428_MOUSE Notch 1 protein OS=Mus musculus GN=Notch1...    33   9.0  
tr|Q7TQ52|Q7TQ52_MOUSE Transmembrane receptor Notch1 B OS=Mus mu...    33   9.0  
tr|Q7TQ51|Q7TQ51_MOUSE Transmembrane receptor Notch1 D OS=Mus mu...    33   9.0  
tr|Q7TQ50|Q7TQ50_MOUSE Notch gene homolog 1 (Drosophila) OS=Mus ...    33   9.0  
tr|B6MCM7|B6MCM7_BRAFL Putative uncharacterized protein (Fragmen...    33   9.0  
tr|Q53ME9|Q53ME9_ORYSJ Os11g0294400 protein OS=Oryza sativa subs...    33   9.1  
tr|A9RXE4|A9RXE4_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.1  
tr|A2ZDI6|A2ZDI6_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.1  

>tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71802 PE=4 SV=1
          Length = 454

 Score = 41.6 bits (96), Expect = 0.033
 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 373 GEVCLD-SDLPPLPRGWERCLDLQSGVMYLKQMN 471
           G VC D    P LP GWE+CLDL+SG++Y K  N
Sbjct: 21  GYVCGDLQPEPQLPSGWEKCLDLKSGLIYFKDWN 54


>tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165908 PE=4 SV=1
          Length = 418

 Score = 39.3 bits (90), Expect = 0.17
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +1

Query: 400 PPLPRGWERCLDLQSGVMYLKQMN 471
           P LP GWE+CLDL+SG++Y +  N
Sbjct: 91  PQLPSGWEKCLDLKSGLIYFRDWN 114


>tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_80180 PE=4 SV=1
          Length = 432

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +1

Query: 385 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQPGESKSG 498
           LDS   P+P GWE+CLDL++G ++L  +N    ES  G
Sbjct: 82  LDSGDAPVPSGWEKCLDLKTGKLFL--VNKNSDESSFG 117


>tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165909 PE=4 SV=1
          Length = 688

 Score = 38.1 bits (87), Expect = 0.37
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
 Frame = +1

Query: 385 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQPGESKSGG---------------IGQSRA 519
           LD    PLP GWE+CLDL++G +Y   +N   G S                   +G  ++
Sbjct: 386 LDPSEEPLPSGWEKCLDLKTGKLY--YVNKSSGVSSLDNPRKRCTTDLSLAHEFLGSKKS 443

Query: 520 TTHKRQRVLLGNDDGEGDP 576
            T +++ ++  +    G+P
Sbjct: 444 ETLQQENLIASSSSSSGNP 462


>tr|B6LIQ9|B6LIQ9_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_207041 PE=4 SV=1
          Length = 721

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 199 LEGWEV*Y*SIETS-CAAQACRSGYVIQSVEGF*HDLIHRWTGKLCGINLQEC 44
           L GW   Y   ET+ CA+  C  G  I  V G+  D    W G  C  N+ EC
Sbjct: 406 LPGWSGQYCQTETNECASNPCLHGQCIDVVNGYNCDCDLGWIGSHCNQNIDEC 458


>tr|Q0V4Z9|Q0V4Z9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_00915 PE=4 SV=1
          Length = 409

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 532 SYGLLLCSGQSHHFWIHLVVGSFASST*LLTADQGTFPILSEGAGGRSR 386
           S G +    + H++W HL+  + + +  LL  D GT+ +L    GGR+R
Sbjct: 139 SIGRMAIETRVHNYWNHLIESASSKTGSLLIWDTGTYEVLPRKTGGRNR 187


>tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171133 PE=4 SV=1
          Length = 932

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 364 NKSGEVC-LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQPGESKSGGIGQSRATTHKRQR 540
           N S E   LD D  PLP  WE+CLDL++G +Y          +KS G+  S      +QR
Sbjct: 599 NSSAEFLELDPD-QPLPADWEKCLDLKTGELYF--------VNKSTGVRTSEDPRKVQQR 649

Query: 541 VL 546
           V+
Sbjct: 650 VV 651


>tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g13100 PE=4
           SV=2
          Length = 225

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +1

Query: 403 PLPRGWERCLDLQSGVMY 456
           PLP  WE+CLDLQSG MY
Sbjct: 78  PLPLDWEQCLDLQSGRMY 95


>tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 224

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +1

Query: 403 PLPRGWERCLDLQSGVMY 456
           PLP  WE+CLDLQSG MY
Sbjct: 86  PLPLDWEQCLDLQSGRMY 103


>tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 232

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 325 DNRMGETISWIAVNKSGEVCLDSDLPPLPRGWERCLDLQSGVMY 456
           D+  GE +  I +N         D  PLP  W+RCLD++SG +Y
Sbjct: 57  DDDRGEVVDGIELN--------FDAAPLPPEWQRCLDIKSGQIY 92