DK955596
Clone id TST39A01NGRL0023_I11
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_I11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CATTGGCGTCCCCCTTGCTCGCCGTGTGCTCTTTCGCGAGCCAAACTCGGTCTCTTCGTT
TTACCAGCATCTCGTATTCTCACGCGCGCCATCACGCGCTTTGAGCAGACGTCTAGCTGC
CATAGCCATGACCACCGCTGCTCCAGATGCTGCATCTCCTTCTATGATCACAAGTGAGAA
AGAAGAATTAGAGTTCTGGCAACGTGTAACAGCTCATCAGAAAACAGCACAGAGGCTTTC
AGCATCAGAGGAAGCACGCATAGTTGTAGATCAATGTCTAAGTGCCTTCCTTTCAACATT
TTCGAAGAAATTTGAAGGCTTCCCCTATACTTCGTATGTTGATTATGCAGCAGATGAGGA
TGGAAGCCTGATTCTTTCGGTCAGCAGTTTAGCCCCACATAGAAAGGACCTTGAAGAATA
TCAGAAATGCTCCTTGTTAATCATGAAGGACAAGCTGGATAGAAGTGATATCCTTGTCAC
TTATATGGGTGAAGCTTCAGAGGTACCAGAGCTTGAA
■■Homology search results ■■ -
sp_hit_id Q4AAJ5
Definition sp|Q4AAJ5|RF1_MYCHJ Peptide chain release factor 1 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
Align length 51
Score (bit) 33.1
E-value 0.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955596|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_I11, 5'
(517 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4AAJ5|RF1_MYCHJ Peptide chain release factor 1 OS=Mycoplasma... 33 0.80
sp|Q4A8M6|RF1_MYCH7 Peptide chain release factor 1 OS=Mycoplasma... 33 0.80
sp|Q601F9|RF1_MYCH2 Peptide chain release factor 1 OS=Mycoplasma... 33 0.80
sp|O18737|CACO2_BOVIN Calcium-binding and coiled-coil domain-con... 31 4.0
sp|Q8C827|ZFP62_MOUSE Zinc finger protein 62 OS=Mus musculus GN=... 30 6.8
sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabido... 30 6.8

>sp|Q4AAJ5|RF1_MYCHJ Peptide chain release factor 1 OS=Mycoplasma
hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
GN=prfA PE=3 SV=1
Length = 361

Score = 33.1 bits (74), Expect = 0.80
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2

Query: 353 DEDGSLI-LSVSSLAPHRKDLEEYQKCSLLIM--KDKLDRSDILVTYMGEA 496
++D LI L+ +A K++EEY+K L++M KDK D D++V G A
Sbjct: 72 EDDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAA 122


>sp|Q4A8M6|RF1_MYCH7 Peptide chain release factor 1 OS=Mycoplasma
hyopneumoniae (strain 7448) GN=prfA PE=3 SV=1
Length = 361

Score = 33.1 bits (74), Expect = 0.80
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2

Query: 353 DEDGSLI-LSVSSLAPHRKDLEEYQKCSLLIM--KDKLDRSDILVTYMGEA 496
++D LI L+ +A K++EEY+K L++M KDK D D++V G A
Sbjct: 72 EDDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAA 122


>sp|Q601F9|RF1_MYCH2 Peptide chain release factor 1 OS=Mycoplasma
hyopneumoniae (strain 232) GN=prfA PE=3 SV=1
Length = 361

Score = 33.1 bits (74), Expect = 0.80
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2

Query: 353 DEDGSLI-LSVSSLAPHRKDLEEYQKCSLLIM--KDKLDRSDILVTYMGEA 496
++D LI L+ +A K++EEY+K L++M KDK D D++V G A
Sbjct: 72 EDDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAA 122


>sp|O18737|CACO2_BOVIN Calcium-binding and coiled-coil
domain-containing protein 2 OS=Bos taurus GN=CALCOCO2
PE=2 SV=1
Length = 450

Score = 30.8 bits (68), Expect = 4.0
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +2

Query: 185 ELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPY-----TSYVDYA 349
E+E Q +QK + S +E+ + VDQ L A LS ++ E T +++
Sbjct: 206 EIELLQLKEQNQKMS---SENEKMGVRVDQ-LQAQLSNQGREMEKLVQGVQDKTEQLEHL 261

Query: 350 ADEDGSLILSVSSLAPHRKDLEE 418
+E+G L LS++ H+K LE+
Sbjct: 262 KEENGQLFLSLTEQREHQKKLEQ 284


>sp|Q8C827|ZFP62_MOUSE Zinc finger protein 62 OS=Mus musculus
GN=Zfp62 PE=2 SV=1
Length = 914

Score = 30.0 bits (66), Expect = 6.8
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +2

Query: 251 EARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADEDGSLILSVSSLAPHRKDLEEYQKC 430
E R D C F S+ S + +T Y DE G +S SSL H+ + C
Sbjct: 156 EKRYECDDCRGTFRSSSSLRVHKRIHTGEKPYKCDECGKAYMSYSSLINHKSTHSGEKNC 215


>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE
OS=Arabidopsis thaliana GN=KEU PE=1 SV=2
Length = 666

Score = 30.0 bits (66), Expect = 6.8
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Frame = +2

Query: 206 VTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADE--DGSLILS 379
+T H++ + L EE D CL+ S + F V Y A + D S + +
Sbjct: 161 ITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAVRYRAAKSLDASTMTT 220

Query: 380 VSSLAP-------------HRKDLEEY---QKCSLLIMKDKLDR 463
+ L P H++ +E + + C LLI+ +D+
Sbjct: 221 LRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQ 264


tr_hit_id Q2XPX4
Definition tr|Q2XPX4|Q2XPX4_SOLTU Root border cell-specific protein-like protein OS=Solanum tuberosum
Align length 115
Score (bit) 106.0
E-value 8.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955596|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_I11, 5'
(517 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2XPX4|Q2XPX4_SOLTU Root border cell-specific protein-like pr... 106 8e-22
tr|Q9M7D2|Q9M7D2_PEA Root border cell-specific protein OS=Pisum ... 105 2e-21
tr|A7PW46|A7PW46_VITVI Chromosome chr8 scaffold_34, whole genome... 100 6e-20
tr|Q9SRW6|Q9SRW6_ARATH F20H23.6 protein OS=Arabidopsis thaliana ... 98 2e-19
tr|Q93WM0|Q93WM0_ARATH AT3g03890/F20H23_6 OS=Arabidopsis thalian... 98 2e-19
tr|Q8LDU1|Q8LDU1_ARATH Putative uncharacterized protein OS=Arabi... 98 2e-19
tr|Q6ZL16|Q6ZL16_ORYSJ Os07g0573800 protein OS=Oryza sativa subs... 97 6e-19
tr|B8B7Q6|B8B7Q6_ORYSI Putative uncharacterized protein OS=Oryza... 97 6e-19
tr|A3BLE3|A3BLE3_ORYSJ Putative uncharacterized protein OS=Oryza... 97 6e-19
tr|A9RBQ9|A9RBQ9_PHYPA Predicted protein (Fragment) OS=Physcomit... 93 9e-18
tr|B6SUB0|B6SUB0_MAIZE Root border cell-specific protein OS=Zea ... 92 2e-17
tr|B4G1W4|B4G1W4_MAIZE Putative uncharacterized protein OS=Zea m... 89 1e-16
tr|A4S4F1|A4S4F1_OSTLU Predicted protein OS=Ostreococcus lucimar... 59 1e-07
tr|Q00Z88|Q00Z88_OSTTA Root border cell-specific protein (ISS) O... 58 3e-07
tr|Q3K7L3|Q3K7L3_PSEPF Pyridoxamine 5'-phosphate oxidase-like, F... 55 2e-06
tr|Q01TW9|Q01TW9_SOLUE Pyridoxamine 5'-phosphate oxidase-related... 54 4e-06
tr|A6VB60|A6VB60_PSEA7 Putative uncharacterized protein OS=Pseud... 52 1e-05
tr|A8I247|A8I247_CHLRE Predicted protein OS=Chlamydomonas reinha... 52 1e-05
tr|Q9HW16|Q9HW16_PSEAE Putative uncharacterized protein OS=Pseud... 52 2e-05
tr|Q02H52|Q02H52_PSEAB Putative uncharacterized protein OS=Pseud... 52 2e-05
tr|B7UZG6|B7UZG6_PSEAE Putative uncharacterized protein OS=Pseud... 52 2e-05
tr|A3LLB1|A3LLB1_PSEAE Putative uncharacterized protein OS=Pseud... 52 2e-05
tr|A3L4L0|A3L4L0_PSEAE Putative uncharacterized protein OS=Pseud... 52 2e-05
tr|Q4K761|Q4K761_PSEF5 Putative uncharacterized protein OS=Pseud... 52 2e-05
tr|B8BUD7|B8BUD7_THAPS Predicted protein OS=Thalassiosira pseudo... 52 2e-05
tr|Q15VS4|Q15VS4_PSEA6 Pyridoxamine 5'-phosphate oxidase-related... 51 4e-05
tr|B7G091|B7G091_PHATR Predicted protein (Fragment) OS=Phaeodact... 51 4e-05
tr|B1J3K2|B1J3K2_PSEPW Pyridoxamine 5'-phosphate oxidase-related... 49 1e-04
tr|Q5QXC9|Q5QXC9_IDILO Uncharacterized metal-binding protein OS=... 49 1e-04
tr|Q2IP99|Q2IP99_ANADE FMN-binding pyridoxamine 5'-phosphate oxi... 49 1e-04

>tr|Q2XPX4|Q2XPX4_SOLTU Root border cell-specific protein-like
protein OS=Solanum tuberosum PE=2 SV=1
Length = 321

Score = 106 bits (264), Expect = 8e-22
Identities = 54/115 (46%), Positives = 77/115 (66%)
Frame = +2

Query: 173 SEKEELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAA 352
S +E++ +Q + AHQ+ A RLS E+ R ++ L LSTFS+K+EG+P S VD+A
Sbjct: 61 SSGDEVDIFQLIQAHQEKAARLSPIEDVRTLLHYSLRGVLSTFSQKYEGYPSASMVDFAC 120

Query: 353 DEDGSLILSVSSLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPELE 517
D GS IL+VS+LA H KDL +CSLL+ +D DR+D+++T G+A VPE E
Sbjct: 121 DTYGSPILAVSNLAVHTKDLLATSRCSLLVARDPEDRTDLVITVHGDAVPVPETE 175


>tr|Q9M7D2|Q9M7D2_PEA Root border cell-specific protein OS=Pisum
sativum GN=BRD13 PE=2 SV=1
Length = 325

Score = 105 bits (261), Expect = 2e-21
Identities = 53/110 (48%), Positives = 75/110 (68%)
Frame = +2

Query: 182 EELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADED 361
E+ + +Q + AHQ+ A RL EE R V+D + LSTFSKK++G+P S VD+A D +
Sbjct: 66 EKDDIFQLIQAHQEKAARLPPLEEIRTVLDLSVRGTLSTFSKKYDGYPSGSMVDFACDAN 125

Query: 362 GSLILSVSSLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPE 511
G LIL+VS LA H KDL KCS+L+ +D DR+D+++T+ G+A VPE
Sbjct: 126 GCLILAVSDLAVHSKDLAANPKCSVLVARDPEDRTDLVITFHGDAIFVPE 175


>tr|A7PW46|A7PW46_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025470001
PE=4 SV=1
Length = 279

Score = 100 bits (248), Expect = 6e-20
Identities = 52/109 (47%), Positives = 71/109 (65%)
Frame = +2

Query: 185 ELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADEDG 364
+ E +Q + HQ+ A RL EE R V++ + LST S+K+EG+P S VD+A D+DG
Sbjct: 20 DAEVFQLIKDHQEKAARLPPLEEIRTVINHSVRGMLSTISQKYEGYPSGSMVDFACDQDG 79

Query: 365 SLILSVSSLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPE 511
IL+VSSLA H KDL KCSLL+ KD D++D+L+T G+A V E
Sbjct: 80 YPILAVSSLANHTKDLLANTKCSLLVAKDPEDKTDLLITVHGDAVPVSE 128


>tr|Q9SRW6|Q9SRW6_ARATH F20H23.6 protein OS=Arabidopsis thaliana
GN=F20H23.6 PE=4 SV=1
Length = 201

Score = 98.2 bits (243), Expect = 2e-19
Identities = 53/113 (46%), Positives = 73/113 (64%)
Frame = +2

Query: 173 SEKEELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAA 352
S + + ++ + AH++ A RLS EE R V++ + LSTFS+K+EG+P S VD+A
Sbjct: 16 SGNSDTDVFKLIQAHEEKAARLSPVEEIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFAC 75

Query: 353 DEDGSLILSVSSLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPE 511
D DGS IL+VSSLA H KDL KCSLLI +D DR+ + +T G+A V E
Sbjct: 76 DADGSPILAVSSLAVHTKDLLANPKCSLLIARDPEDRTGLRITLHGDAVLVSE 128


>tr|Q93WM0|Q93WM0_ARATH AT3g03890/F20H23_6 OS=Arabidopsis thaliana
GN=At3g03890 PE=2 SV=1
Length = 305

Score = 98.2 bits (243), Expect = 2e-19
Identities = 53/113 (46%), Positives = 73/113 (64%)
Frame = +2

Query: 173 SEKEELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAA 352
S + + ++ + AH++ A RLS EE R V++ + LSTFS+K+EG+P S VD+A
Sbjct: 60 SGNSDTDVFKLIQAHEEKAARLSPVEEIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFAC 119

Query: 353 DEDGSLILSVSSLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPE 511
D DGS IL+VSSLA H KDL KCSLLI +D DR+ + +T G+A V E
Sbjct: 120 DADGSPILAVSSLAVHTKDLLANPKCSLLIARDPEDRTGLRITLHGDAVLVSE 172


>tr|Q8LDU1|Q8LDU1_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 321

Score = 98.2 bits (243), Expect = 2e-19
Identities = 53/113 (46%), Positives = 73/113 (64%)
Frame = +2

Query: 173 SEKEELEFWQRVTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAA 352
S + + ++ + AH++ A RLS EE R V++ + LSTFS+K+EG+P S VD+A
Sbjct: 60 SGNSDTDVFKLIQAHEEKAARLSPVEEIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFAC 119

Query: 353 DEDGSLILSVSSLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPE 511
D DGS IL+VSSLA H KDL KCSLLI +D DR+ + +T G+A V E
Sbjct: 120 DADGSPILAVSSLAVHTKDLLANPKCSLLIARDPEDRTGLRITLHGDAVLVSE 172


>tr|Q6ZL16|Q6ZL16_ORYSJ Os07g0573800 protein OS=Oryza sativa subsp.
japonica GN=OJ1699_E05.22-1 PE=2 SV=1
Length = 342

Score = 96.7 bits (239), Expect = 6e-19
Identities = 50/104 (48%), Positives = 69/104 (66%)
Frame = +2

Query: 206 VTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADEDGSLILSVS 385
+ AHQ+ A RL EE R ++DQ + L+T S+ G+P S VD+A D+DGS IL+VS
Sbjct: 87 IRAHQEKAARLPPVEEIRTILDQSVRGVLATHSQGHVGYPSGSMVDFACDQDGSPILAVS 146

Query: 386 SLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPELE 517
SLA H K+L E KCSLL+ KD DR+D ++T G+A+ V + E
Sbjct: 147 SLAIHSKNLSENPKCSLLVAKDPEDRTDTVITVYGDATPVSDQE 190


>tr|B8B7Q6|B8B7Q6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26573 PE=4 SV=1
Length = 339

Score = 96.7 bits (239), Expect = 6e-19
Identities = 50/104 (48%), Positives = 69/104 (66%)
Frame = +2

Query: 206 VTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADEDGSLILSVS 385
+ AHQ+ A RL EE R ++DQ + L+T S+ G+P S VD+A D+DGS IL+VS
Sbjct: 84 IRAHQEKAARLPPVEEIRTILDQSVRGVLATHSQGHVGYPSGSMVDFACDQDGSPILAVS 143

Query: 386 SLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPELE 517
SLA H K+L E KCSLL+ KD DR+D ++T G+A+ V + E
Sbjct: 144 SLAIHSKNLSENPKCSLLVAKDPEDRTDTVITVYGDATPVSDQE 187


>tr|A3BLE3|A3BLE3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_023865 PE=4 SV=1
Length = 348

Score = 96.7 bits (239), Expect = 6e-19
Identities = 50/104 (48%), Positives = 69/104 (66%)
Frame = +2

Query: 206 VTAHQKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADEDGSLILSVS 385
+ AHQ+ A RL EE R ++DQ + L+T S+ G+P S VD+A D+DGS IL+VS
Sbjct: 87 IRAHQEKAARLPPVEEIRTILDQSVRGVLATHSQGHVGYPSGSMVDFACDQDGSPILAVS 146

Query: 386 SLAPHRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPELE 517
SLA H K+L E KCSLL+ KD DR+D ++T G+A+ V + E
Sbjct: 147 SLAIHSKNLSENPKCSLLVAKDPEDRTDTVITVYGDATPVSDQE 190


>tr|A9RBQ9|A9RBQ9_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110763 PE=4 SV=1
Length = 247

Score = 92.8 bits (229), Expect = 9e-18
Identities = 50/100 (50%), Positives = 66/100 (66%)
Frame = +2

Query: 218 QKTAQRLSASEEARIVVDQCLSAFLSTFSKKFEGFPYTSYVDYAADEDGSLILSVSSLAP 397
QK A RLS ++AR +V +A LST S+K++GFP S V YA D+ G IL +SSL+P
Sbjct: 1 QKAAARLSKVDDARTLVATSSTATLSTISQKYDGFPLGSLVLYATDDSGRPILVISSLSP 60

Query: 398 HRKDLEEYQKCSLLIMKDKLDRSDILVTYMGEASEVPELE 517
H KDLE KCSLL+ +D D SD +VT +G+A V + E
Sbjct: 61 HTKDLETNPKCSLLVARDAGDISDTVVTIIGDAEMVSDAE 100