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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955605
Clone id TST39A01NGRL0023_I20
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_I20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTCCACGGTACCCACAATTCCAGACTGCTTTCACCTTCCGTTTGCCTGGCAAGCTTGAAT
TCGCCATGCCCACAACAGAGTCATGGTGCACTTCCATCATTTTCTTCTAGCCTTTCACGT
TTCACTTGCTCTCCTCGACGCCATTATTCATTCTGCATTGTGGCTAAGGCTAAGCAAAGT
GCCCCTCCTCCCCGGCCAGAGCTATGGGAGCTGCGCGAATACGACCCAGACGACGACGAA
GATTTTGCGGAAAAGAAGATGAAAACCCGAGTCACGTTCGAAACAGAGGCAGAGGCAAGA
CGGCACCACTGGATATCCCGCATGTGGGCACCTTGGGAGGAAGCCCTCTCCCCAGAAGCT
CGCTTTGCTGTAGATGCCCTTAACCTTGATCAAGGAGAGGAACCCATAGTCACCCGAGAG
ATGATGGAGAACCTGGACGTGAACAAACCCATTATACCTGATGACGCAGAGATTCTTGAG
GACCTGGATGATATTGAAGCAAGGGAGAATGGTGCACTTCCAGGGACTGCCTGGAAAAAA
ACCCATGGTTTACTTCTCTCATTCCGCCGCGTGATTGGCCCCCCCCCT
■■Homology search results ■■ -
sp_hit_id P31569
Definition sp|P31569|YCF2_OENVI Protein ycf2 (Fragment) OS=Oenothera villaricae
Align length 62
Score (bit) 33.9
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955605|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_I20, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31569|YCF2_OENVI Protein ycf2 (Fragment) OS=Oenothera villar...    34   0.62 
sp|P31568|YCF2_OENPI Protein ycf2 (Fragment) OS=Oenothera picens...    34   0.62 
sp|B0Z5H1|YCF2_OENPA Protein ycf2 OS=Oenothera parviflora GN=ycf...    33   1.1  
sp|B0Z587|YCF2_OENGL Protein ycf2 OS=Oenothera glazioviana GN=yc...    33   1.1  
sp|Q9MEF2|YCF2_OENEH Protein ycf2 OS=Oenothera elata subsp. hook...    33   1.1  
sp|B0Z503|YCF2_OENBI Protein ycf2 OS=Oenothera biennis GN=ycf2-A...    33   1.1  
sp|B0Z4R9|YCF2_OENAR Protein ycf2 OS=Oenothera argillicola GN=yc...    33   1.1  
sp|Q10XL4|SYR_TRIEI Arginyl-tRNA synthetase OS=Trichodesmium ery...    32   3.1  

>sp|P31569|YCF2_OENVI Protein ycf2 (Fragment) OS=Oenothera
           villaricae GN=ycf2 PE=3 SV=1
          Length = 630

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 223 DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
           D DDDED FA +KM   +  E         W  R+W PW+  L  EA    + +  ++ E
Sbjct: 360 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFLLDCEAEIPAEEIPEEEDE 412

Query: 400 EP 405
            P
Sbjct: 413 LP 414


>sp|P31568|YCF2_OENPI Protein ycf2 (Fragment) OS=Oenothera picensis
           GN=ycf2 PE=3 SV=1
          Length = 721

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 223 DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
           D DDDED FA +KM   +  E         W  R+W PW+  L  EA    + +  ++ E
Sbjct: 449 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFLLDCEAEIPAEEIPEEEDE 501

Query: 400 EP 405
            P
Sbjct: 502 LP 503


>sp|B0Z5H1|YCF2_OENPA Protein ycf2 OS=Oenothera parviflora GN=ycf2-A
            PE=3 SV=1
          Length = 2312

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 223  DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
            D DDDED FA +KM   +  E         W  R+W PW+  L  EA   + A  + + E
Sbjct: 2008 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFILDCEAE--IPAEEIPEEE 2058

Query: 400  EPI 408
            +P+
Sbjct: 2059 DPL 2061


>sp|B0Z587|YCF2_OENGL Protein ycf2 OS=Oenothera glazioviana GN=ycf2-A
            PE=3 SV=1
          Length = 2376

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 223  DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
            D DDDED FA +KM   +  E         W  R+W PW+  L  EA   + A  + + E
Sbjct: 2070 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFILDCEAE--IPAEEIPEEE 2120

Query: 400  EPI 408
            +P+
Sbjct: 2121 DPL 2123


>sp|Q9MEF2|YCF2_OENEH Protein ycf2 OS=Oenothera elata subsp. hookeri
            GN=ycf2-A PE=3 SV=2
          Length = 2340

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 223  DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
            D DDDED FA +KM   +  E         W  R+W PW+  L  EA   + A  + + E
Sbjct: 2036 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFILDCEAE--IPAEEIPEEE 2086

Query: 400  EPI 408
            +P+
Sbjct: 2087 DPL 2089


>sp|B0Z503|YCF2_OENBI Protein ycf2 OS=Oenothera biennis GN=ycf2-A PE=3
            SV=1
          Length = 2325

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 223  DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
            D DDDED FA +KM   +  E         W  R+W PW+  L  EA   + A  + + E
Sbjct: 2021 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFILDCEAE--IPAEEIPEEE 2071

Query: 400  EPI 408
            +P+
Sbjct: 2072 DPL 2074


>sp|B0Z4R9|YCF2_OENAR Protein ycf2 OS=Oenothera argillicola GN=ycf2-A
            PE=3 SV=1
          Length = 2360

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 223  DPDDDED-FAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
            D DDDED FA +KM   +  E         W  R+W PW+  L  EA   + A  + + E
Sbjct: 2056 DDDDDEDVFAPQKMLEDLFSELV-------WSPRIWHPWDFILDCEAE--IPAEEIPEEE 2106

Query: 400  EPI 408
            +P+
Sbjct: 2107 DPL 2109


>sp|Q10XL4|SYR_TRIEI Arginyl-tRNA synthetase OS=Trichodesmium
           erythraeum (strain IMS101) GN=argS PE=3 SV=1
          Length = 585

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 229 DDDEDFAEKKMKTRVTFETEAEARRHHW 312
           D+D+DF EK  +  V  +T AE  RH W
Sbjct: 208 DEDQDFQEKSRQEVVNLQTGAEDSRHAW 235
tr_hit_id A9RDV5
Definition tr|A9RDV5|A9RDV5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 62.4
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955605|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_I20, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RDV5|A9RDV5_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-11
tr|A7PHC9|A7PHC9_VITVI Chromosome chr17 scaffold_16, whole genom...    59   2e-07
tr|Q9M3G9|Q9M3G9_ARATH Putative uncharacterized protein T29H11_2...    57   8e-07
tr|Q0WNC4|Q0WNC4_ARATH Putative uncharacterized protein At3g4850...    57   8e-07
tr|Q7F1X2|Q7F1X2_ORYSJ B1065G12.12 protein OS=Oryza sativa subsp...    49   3e-04
tr|Q5N6Y3|Q5N6Y3_ORYSJ cDNA clone:J013119G01, full insert sequen...    49   3e-04
tr|Q0JGV0|Q0JGV0_ORYSJ Os01g0901900 protein (Fragment) OS=Oryza ...    49   3e-04
tr|A2WY11|A2WY11_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|Q2VY14|Q2VY14_SOLLC CONSTANS interacting protein 5 (Fragment)...    44   0.005
tr|A9TB39|A9TB39_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|B0VDU0|B0VDU0_ACIBY Putative uncharacterized protein OS=Acine...    34   7.1  
tr|B7I5T8|B7I5T8_ACIBA Putative uncharacterized protein OS=Acine...    34   7.1  
tr|B7H3D6|B7H3D6_ACIBA PepSY-associated TM helix family protein ...    34   7.1  
tr|B5I6H7|B5I6H7_9ACTO Acetolactate synthase3 large subunit OS=S...    33   9.2  

>tr|A9RDV5|A9RDV5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64788 PE=4 SV=1
          Length = 795

 Score = 62.4 bits (150), Expect(2) = 1e-11
 Identities = 33/73 (45%), Positives = 45/73 (61%)
 Frame = +1

Query: 220 YDPDDDEDFAEKKMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGE 399
           ++PDD E+  E          TE EARR +W+ R WAPWEE LSPE +FA+D+L   + E
Sbjct: 109 FNPDDYEEREE----------TEEEARRRNWVERGWAPWEEWLSPEGQFAIDSLVAGE-E 157

Query: 400 EPIVTREMMENLD 438
           EP V+ E  + L+
Sbjct: 158 EPAVSWENFQKLN 170



 Score = 30.4 bits (67), Expect(2) = 1e-11
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 543 PWFTSLIPPRDWPPP 587
           P   +LIPPRDWPPP
Sbjct: 208 PLTFTLIPPRDWPPP 222


>tr|A7PHC9|A7PHC9_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017894001
           PE=4 SV=1
          Length = 674

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 38/69 (55%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
 Frame = +1

Query: 235 DEDFAEK---KMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE- 402
           DE F EK   K K     ETE EARR +WI R WAPWEE L+PEA FA  +LN  +GEE 
Sbjct: 55  DETFLEKFGPKDK-----ETEDEARRKNWIERGWAPWEEILTPEADFARKSLN--EGEEV 107

Query: 403 PIVTREMME 429
           P+ T E +E
Sbjct: 108 PLKTPEAIE 116


>tr|Q9M3G9|Q9M3G9_ARATH Putative uncharacterized protein T29H11_270
           OS=Arabidopsis thaliana GN=T29H11_270 PE=4 SV=1
          Length = 496

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
 Frame = +1

Query: 235 DEDFAEK---KMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE- 402
           DE F EK   K K     +TE EARR +WI R WAPWEE L+PEA FA  +LN  +GEE 
Sbjct: 50  DETFLEKFGPKDK-----DTEDEARRRNWIERGWAPWEEILTPEADFARKSLN--EGEEV 102

Query: 403 PIVTREMME 429
           P+ + E +E
Sbjct: 103 PLQSPEAIE 111


>tr|Q0WNC4|Q0WNC4_ARATH Putative uncharacterized protein At3g48500
           OS=Arabidopsis thaliana GN=At3g48500 PE=2 SV=1
          Length = 697

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
 Frame = +1

Query: 235 DEDFAEK---KMKTRVTFETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE- 402
           DE F EK   K K     +TE EARR +WI R WAPWEE L+PEA FA  +LN  +GEE 
Sbjct: 50  DETFLEKFGPKDK-----DTEDEARRRNWIERGWAPWEEILTPEADFARKSLN--EGEEV 102

Query: 403 PIVTREMME 429
           P+ + E +E
Sbjct: 103 PLQSPEAIE 111


>tr|Q7F1X2|Q7F1X2_ORYSJ B1065G12.12 protein OS=Oryza sativa subsp.
           japonica GN=B1065G12.12 PE=4 SV=1
          Length = 798

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 ETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE-PIVTREMME 429
           E E  ARR  W+   WAPWEE ++PE  FA  +LN  +GEE P+ T E  E
Sbjct: 204 EPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLN--EGEEVPLQTPESQE 252


>tr|Q5N6Y3|Q5N6Y3_ORYSJ cDNA clone:J013119G01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0551C06.14 PE=2 SV=1
          Length = 468

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 ETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE-PIVTREMME 429
           E E  ARR  W+   WAPWEE ++PE  FA  +LN  +GEE P+ T E  E
Sbjct: 57  EPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLN--EGEEVPLQTPESQE 105


>tr|Q0JGV0|Q0JGV0_ORYSJ Os01g0901900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0901900 PE=4 SV=1
          Length = 476

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 ETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE-PIVTREMME 429
           E E  ARR  W+   WAPWEE ++PE  FA  +LN  +GEE P+ T E  E
Sbjct: 65  EPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLN--EGEEVPLQTPESQE 113


>tr|A2WY11|A2WY11_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04816 PE=4 SV=1
          Length = 651

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 ETEAEARRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE-PIVTREMME 429
           E E  ARR  W+   WAPWEE ++PE  FA  +LN  +GEE P+ T E  E
Sbjct: 57  EPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLN--EGEEVPLQTPESQE 105


>tr|Q2VY14|Q2VY14_SOLLC CONSTANS interacting protein 5 (Fragment)
           OS=Solanum lycopersicum GN=CIP5 PE=2 SV=1
          Length = 600

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +1

Query: 307 HWISRMWAPWEEALSPEARFAVDALNLDQGEE 402
           +W+ R WAPWEE LSPEA FA  +LN  +GEE
Sbjct: 1   NWVDRGWAPWEEILSPEADFARKSLN--EGEE 30


>tr|A9TB39|A9TB39_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90440 PE=4 SV=1
          Length = 293

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 298 RRHHWISRMWAPWEEALSPEARFAVDALNLDQGEE 402
           RRHHW++     W++A +P  R  +D   L Q EE
Sbjct: 242 RRHHWLATNMQKWKDAQTPLNRATIDTSTLSQQEE 276