DK955606 |
Clone id |
TST39A01NGRL0023_I21 |
Library |
TST39 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_I21. 5' end sequence. |
Accession |
DK955606 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL101Contig1 |
Sequence |
AGCTCCCATCGTCGTTATGGCATTTGCAAAGGCGAAGAAGACAAAGGCCTATTTCAAGCG CTATCAAGTGAAGTACAAGAGAAGACGGGCTGGCAAGACTGATTACCGAGCAAGGGTCAG GCTTACCAACCAGGACAAAAATAAGTACAACACCCCAAAGTATCGCCTTGTTGTGCGATT TACCAACAAGGACATCACTGCCCAGATAACGTATGCCACTCTAGCTGGTGATGTTGTTCT TGCAGCGGCCTACTCTCATGAGCTACCTCAATATGGGCTTAAAACAGGGCTGACAAATTA TGCGGCAGCATACTGCACTGGATTGCTACTTGCTCGGAGAGTTTTGAAGCAGTTTGATCT AGACCAGGAATATGTTGGCAATGAGGAGGCTACAGGGGAGGACTATAACGTTGAGGAGGC TGGTGAACGCCGACCTTTCAGGGCCCTCCTTGATGTTGGCCTTGTGAGAACCACCACGGG GAACCGGGTTTTTGGAGCCTTGAAGGGTGCTTTAGATGGGGGTCTGGATGTTCCACATAG TGACAAGAGGTTTGCAGGGTATAGTAAAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0JGY1 |
Definition |
sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica |
Align length |
170 |
Score (bit) |
273.0 |
E-value |
6.0e-73 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SNA3 |
Definition |
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
170 |
Score (bit) |
283.0 |
E-value |
6.0e-75 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955606|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_I21, 5' (570 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella paten... 283 6e-75 tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella paten... 280 5e-74 tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella paten... 278 1e-73 tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella paten... 278 1e-73 tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza... 273 6e-72 tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ... 273 6e-72 tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea... 271 1e-71 tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza... 271 2e-71 tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ... 271 2e-71 tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Popul... 266 5e-70 tr|A7QAV5|A7QAV5_VITVI Chromosome chr5 scaffold_72, whole genome... 265 1e-69 tr|B7FJX5|B7FJX5_MEDTR Putative uncharacterized protein OS=Medic... 265 2e-69 tr|A7R4R2|A7R4R2_VITVI Chromosome undetermined scaffold_763, who... 264 2e-69 tr|B6THG9|B6THG9_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE... 263 5e-69 tr|A9PFA8|A9PFA8_POPTR Putative uncharacterized protein OS=Popul... 263 5e-69 tr|B6TYP7|B6TYP7_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE... 262 9e-69 tr|A3A0I1|A3A0I1_ORYSJ Putative uncharacterized protein OS=Oryza... 261 1e-68 tr|Q0JGY2|Q0JGY2_ORYSJ Os01g0896700 protein (Putative uncharacte... 259 6e-68 tr|A9PH69|A9PH69_POPTR Putative uncharacterized protein OS=Popul... 256 6e-67 tr|A9PBZ9|A9PBZ9_POPTR Putative uncharacterized protein OS=Popul... 256 6e-67 tr|Q38HU5|Q38HU5_SOLTU Putative uncharacterized protein OS=Solan... 249 6e-65 tr|A8WNL0|A8WNL0_CAEBR CBR-RPL-5 protein OS=Caenorhabditis brigg... 233 4e-60 tr|A8PSW9|A8PSW9_BRUMA 60S ribosomal protein L5, putative OS=Bru... 226 5e-58 tr|B2YHY0|B2YHY0_9BILA Putative 60S ribosomal protein RPL5 (Frag... 223 4e-57 tr|Q86LY6|Q86LY6_BRALA Ribosomal protein L5 (Fragment) OS=Branch... 223 6e-57 tr|B6LCB3|B6LCB3_BRAFL Putative uncharacterized protein OS=Branc... 222 1e-56 tr|A9UDR2|A9UDR2_9BILA Putative 60S ribosomal protein RP5L (Frag... 221 2e-56 tr|A8HP55|A8HP55_CHLRE Ribosomal protein L5 OS=Chlamydomonas rei... 219 8e-56 tr|B7PFS8|B7PFS8_IXOSC 60S ribosomal protein L5, putative OS=Ixo... 219 1e-55 tr|A7S1I9|A7S1I9_NEMVE Predicted protein OS=Nematostella vectens... 219 1e-55
>tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_214065 PE=4 SV=1 Length = 293
Score = 283 bits (723), Expect = 6e-75 Identities = 139/170 (81%), Positives = 149/170 (87%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVKYKRRRAGKTDYRAR+RLT QDKNKYNTPKYRLVVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRLVVRFTNKDIVAQITYATLAGDIV 74
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE+ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNEQATGEDYNVEE 134
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAGYSK Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGYSK 184
>tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_207358 PE=4 SV=1 Length = 293
Score = 280 bits (715), Expect = 5e-74 Identities = 138/170 (81%), Positives = 147/170 (86%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVKYKRRRAGKTDYRAR+RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRYVVRFTNKDIVAQITYATLAGDIV 74
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNETATGEDYNVEE 134
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAGYSK Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGYSK 184
>tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226607 PE=4 SV=1 Length = 293
Score = 278 bits (712), Expect = 1e-73 Identities = 137/170 (80%), Positives = 147/170 (86%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVKYKRRRAGKTDYRAR+RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRFVVRFTNKDIVAQITYATLAGDIV 74
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNETATGEDYNVEE 134
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG+SK Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGFSK 184
>tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199314 PE=4 SV=1 Length = 293
Score = 278 bits (712), Expect = 1e-73 Identities = 136/170 (80%), Positives = 147/170 (86%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVKYKRRRAGKTDYRAR+RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRFVVRFTNKDIVAQITYATLAGDIV 74
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK +DLD EYVGNE+ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNYDLDDEYVGNEQATGEDYNVEE 134
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAGY+K Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGYNK 184
>tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04779 PE=4 SV=1 Length = 304
Score = 273 bits (697), Expect = 6e-72 Identities = 134/170 (78%), Positives = 145/170 (85%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVK+KRRR GKTDYRAR+RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVLK LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 135
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG+ K Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKK 185
>tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 304
Score = 273 bits (697), Expect = 6e-72 Identities = 134/170 (78%), Positives = 145/170 (85%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVK+KRRR GKTDYRAR+RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVLK LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 135
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG+ K Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKK 185
>tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 297
Score = 271 bits (694), Expect = 1e-71 Identities = 132/170 (77%), Positives = 147/170 (86%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVK+KRRR GKTDYRAR+RL NQDKNKYNTPKYRLVVRF+NKD+ AQI YATLAGDVV Sbjct: 15 RFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRLVVRFSNKDVVAQIIYATLAGDVV 74
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 +AAAYS ELP+YGL+ GLTNYAAAYCTGLLLARRVLKQ ++D+EYVGNEEA+GEDY+VE Sbjct: 75 MAAAYSRELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDEEYVGNEEASGEDYSVEP 134
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 RRPFRALLDVGLVRTTTGNRVF +PHSDKRFAGY+K Sbjct: 135 NDARRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYNK 184
>tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04778 PE=4 SV=1 Length = 304
Score = 271 bits (692), Expect = 2e-71 Identities = 133/170 (78%), Positives = 144/170 (84%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVK+KRRR GKTDYRAR+RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVL LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG+ K Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKK 185
>tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 304
Score = 271 bits (692), Expect = 2e-71 Identities = 133/170 (78%), Positives = 144/170 (84%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVK+KRRR GKTDYRAR+RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVL LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG+ K Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKK 185
>tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 298
Score = 266 bits (681), Expect = 5e-70 Identities = 128/170 (75%), Positives = 146/170 (85%) Frame = +2
Query: 59 RYQVKYKRRRAGKTDYRARVRLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 238 R+QVK+KRRR GKTDYRAR+RL NQDKNKYNTPKYR V+RFTNKDITAQI +A++AGD+V Sbjct: 15 RFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVMRFTNKDITAQIIHASMAGDIV 74
Query: 239 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 418 +AAAYSHELP YGL+ GLTNYAAAYCTGLLLARRVLK+ ++D+EY GN EATGEDY+VE Sbjct: 75 VAAAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEP 134
Query: 419 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGYSK 568 A RRPFRALLDVGLVRTTTGNRVF +PHSDKRFAG++K Sbjct: 135 ADSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNK 184
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