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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955609
Clone id TST39A01NGRL0023_I24
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_I24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCCAAACCAGTGGCATCTGTGGCGGCGCTGCTCGCGGTGGTGGTGGCGTTCATGGTGGT
CCTGCCGGCGGCGCAGGCTGGACACCGGCGGCCGGGCGGCCAGCATGTAAGGGGGATGCG
GCACCTGCAATTCCAGGTGTTCATCCACGACCAGCTGAATGTGACTTCCGTGGTTGTGGC
ACAGCCCAAGGCGGGGCCCATCACGACATTGGGCGCGCCCTTCGGGACGCTGTTCTGCCA
GAACGACCGCATAACGGCCGGCCGGGAGGCGGACAGTGCACTTCTGGGGTCGGCGTCCGG
TCTGTCGGCGCTCTCCGACCTCAACGGCCTCACGGCCTTCACCGCCGGCACGCTGGCCTT
CGACACCCTCAAGGCCAAGCCCCACACCCCTGCTCACCTGCGTGGCCTTCATGGCACCCT
GAACCTTGTCGGCCTTTTCAATGTTATCGAACCCCAACCCACCGCCATAGCTGGGGGTTA
CCGGCTCCTTCCTCCTG
■■Homology search results ■■ -
sp_hit_id Q86UY5
Definition sp|Q86UY5|FA83A_HUMAN Protein FAM83A OS=Homo sapiens
Align length 36
Score (bit) 30.8
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955609|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_I24, 5'
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86UY5|FA83A_HUMAN Protein FAM83A OS=Homo sapiens GN=FAM83A P...    31   3.6  
sp|A7NFV2|HIS8_ROSCS Histidinol-phosphate aminotransferase OS=Ro...    30   4.7  
sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptid...    30   6.1  
sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus ...    30   6.1  
sp|B1ZGZ6|MNMA_METPB tRNA-specific 2-thiouridylase mnmA OS=Methy...    30   6.1  
sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7...    30   6.1  
sp|Q5TC12|ATPF1_HUMAN ATP synthase mitochondrial F1 complex asse...    30   6.1  
sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protei...    30   8.0  
sp|Q3TJ91|L2GL2_MOUSE Lethal(2) giant larvae protein homolog 2 O...    30   8.0  

>sp|Q86UY5|FA83A_HUMAN Protein FAM83A OS=Homo sapiens GN=FAM83A PE=1
           SV=1
          Length = 434

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 388 PCSPAWPSWHPEPCRPFQCYRTPTHRHSWGLPAPSS 495
           PCSPA P  HP P   FQ      H+  WG P+P +
Sbjct: 355 PCSPAAP--HPPPPPRFQ-----PHQGPWGAPSPQA 383


>sp|A7NFV2|HIS8_ROSCS Histidinol-phosphate aminotransferase
           OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
           GN=hisC PE=3 SV=1
          Length = 371

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 118 AAPAIPGVHPRPAECDFRGCGTAQGGAHHDIGRALRDAVLPER----PHNGRPGGGQC 279
           A  A+PG+H  P+  +F  C    GGA     RA+RD  L +R     +  RPG   C
Sbjct: 295 ALAALPGIHVYPSAANFLLCRMTSGGAAR--ARAIRD-TLAQRGILIRYFNRPGIDDC 349


>sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2
           OS=Pongo abelii GN=GTF3C2 PE=2 SV=1
          Length = 911

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 318 SESADRPD-ADPRSALSASRPAVMRSFWQNSVPKGAPNVVMGPALGCATTTE 166
           SES+  P+ A PRS    S     +   +   P G PN +M P   C   T+
Sbjct: 264 SESSSEPEPAVPRSTPRGSTSGKQKPHCRGMAPNGLPNHIMAPVWKCLHLTK 315


>sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus
            (strain Brazil) PE=2 SV=2
          Length = 2436

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 172  GCGTAQGGAHHDIGRALRDAVLPERPHNGRPGGGQC 279
            GC  A      DI  A+ DAV+    H G+ G G C
Sbjct: 1333 GCAPAYAVKRADIATAIEDAVVNAANHRGQVGDGVC 1368


>sp|B1ZGZ6|MNMA_METPB tRNA-specific 2-thiouridylase mnmA
           OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
           13946 / BJ001) GN=mnmA PE=3 SV=2
          Length = 385

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 268 LPAGRYAVVLAEQRPE----GRAQCRDGPRLGLCHNHGSHIQLVVDEH--LELQVPHPPY 107
           +P G YA V+A+ RPE    G     DG RLG    H   I   V +   L+L V  P Y
Sbjct: 211 VPQGGYADVIAKLRPEAARPGEIVDLDGRRLG---EHEGIIHYTVGQRRGLKLSVGEPLY 267

Query: 106 MLAARP 89
           ++   P
Sbjct: 268 VVRLEP 273


>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7
           OS=Homo sapiens GN=CHD7 PE=1 SV=3
          Length = 2997

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 26/110 (23%), Positives = 35/110 (31%)
 Frame = +1

Query: 142 HPRPAECDFRGCGTAQGGAHHDIGRALRDAVLPERPHNGRPGGGQCTSGVGVRSVGALRP 321
           H RP  C   G G  Q         A+++ ++P + H G+    Q               
Sbjct: 474 HMRPNGCPGVGLGDPQ---------AIQERLIPGQQHPGQQPSFQ--------------- 509

Query: 322 QXXXXXXXXXXXXXXXQGQAPHPCSPAWPSWHPEPCRPFQCYRTPTHRHS 471
           Q               Q   PHP    W   HP P    Q  + P H+HS
Sbjct: 510 QLPTCPPLQPHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQ--KVPVHQHS 557


>sp|Q5TC12|ATPF1_HUMAN ATP synthase mitochondrial F1 complex
           assembly factor 1 OS=Homo sapiens GN=ATPAF1 PE=1 SV=1
          Length = 328

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 VLPERPHNGRPGGGQCTSGVGVRS 303
           V P RP +GRP GG  +SGVG  +
Sbjct: 46  VFPVRPGSGRPEGGADSSGVGAEA 69


>sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protein
           37C OS=Homo sapiens GN=VPS37C PE=1 SV=1
          Length = 355

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
 Frame = +1

Query: 235 LPERPHNGRPGGGQCTSGVGVRSVGALRPQXXXXXXXXXXXXXXXQGQAPHPCSPAWPSW 414
           +P RP  G PG     SG G    G   P                 G+ P+P  P  PS+
Sbjct: 266 MPPRP--GYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYPATG---GKPPYPIQPQLPSF 320

Query: 415 --HPEPCRPFQCYRTPTHRHSWGLPAP 489
              P+P  P Q    P     +G P P
Sbjct: 321 PGQPQPSVPLQPPYPPGPAPPYGFPPP 347


>sp|Q3TJ91|L2GL2_MOUSE Lethal(2) giant larvae protein homolog 2
           OS=Mus musculus GN=Llgl2 PE=2 SV=2
          Length = 1027

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -2

Query: 241 LAEQRPEGRAQCRDGPRLGLCHNHGSHIQLVVD------EHLELQVPHPPY 107
           L+ Q+ E  +  RDG  +  CH+ GSH Q  V       E L   +P+ P+
Sbjct: 228 LSSQQLENASWQRDGCLIVTCHSDGSHCQWPVSSDTQNPEPLRSSIPYGPF 278
tr_hit_id A2WXK4
Definition tr|A2WXK4|A2WXK4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 131
Score (bit) 35.8
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955609|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_I24, 5'
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2WXK4|A2WXK4_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.2  
tr|Q8L453|Q8L453_ORYSJ cDNA clone:002-154-C05, full insert seque...    35   1.5  
tr|A5ACT9|A5ACT9_VITVI Putative uncharacterized protein OS=Vitis...    35   2.0  
tr|A5BCB7|A5BCB7_VITVI Putative uncharacterized protein OS=Vitis...    35   2.6  
tr|Q9AEU7|Q9AEU7_BURMA Putative uncharacterized protein OS=Burkh...    34   3.4  
tr|B8PWH4|B8PWH4_DUGBV Glycoprotein OS=Kupe virus PE=4 SV=1            33   7.5  
tr|A8TY51|A8TY51_9PROT Putative uncharacterized protein OS=alpha...    33   7.5  
tr|Q9CSX9|Q9CSX9_MOUSE Putative uncharacterized protein (Fragmen...    33   9.8  
tr|Q9L0T4|Q9L0T4_STRCO Putative uncharacterized protein SCO4510 ...    33   9.8  
tr|A7IBR1|A7IBR1_XANP2 Putative uncharacterized protein OS=Xanth...    33   9.8  
tr|B4WET6|B4WET6_9CAUL Peptidase M16 inactive domain family OS=B...    33   9.8  
tr|B1MTI4|B1MTI4_CALMO Microtubule-associated protein 1A (Predic...    33   9.8  

>tr|A2WXK4|A2WXK4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04655 PE=4 SV=1
          Length = 195

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
 Frame = +2

Query: 95  GGQHVRGM--RHLQFQVFIHDQLNVTSVVVAQPKAGP-ITTLGAPFGTLFCQNDRITAGR 265
           G + ++G   + L F ++  + +N TS +V    AG  ++    PFGT++   D +T   
Sbjct: 31  GDKGIKGFHGKKLSFTLYQQETINKTSYMVVAGVAGAGVSETTTPFGTVYVFRDDLTVRA 90

Query: 266 EXXXXXXXXXXXXXXXXXXNGLTAFTAGTLAFDTLKAKPHTPAHLRGLHGTLNLVGLFNV 445
           E                  +GL + + G +  D            RG  G+++++G  + 
Sbjct: 91  ERSSRVAGVVEGTSVTTSFDGLRSLSLGKITLDH-----------RGRRGSMSVLGGTHN 139

Query: 446 IEPQPTAIAGG 478
             P    + GG
Sbjct: 140 TRPSDCPVVGG 150


>tr|Q8L453|Q8L453_ORYSJ cDNA clone:002-154-C05, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0018C10.24 PE=2 SV=1
          Length = 195

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
 Frame = +2

Query: 95  GGQHVRGM--RHLQFQVFIHDQLNVTSVVVAQPKAGP-ITTLGAPFGTLFCQNDRITAGR 265
           G + ++G   + L F ++  + +N TS +V    AG  ++    PFGT++   D +T   
Sbjct: 31  GDKGIKGFHGKKLSFTLYQQETINKTSYMVVAGVAGAGVSETTTPFGTVYVFRDDLTVRP 90

Query: 266 EXXXXXXXXXXXXXXXXXXNGLTAFTAGTLAFDTLKAKPHTPAHLRGLHGTLNLVGLFNV 445
           E                  +GL + + G +  D            RG  G+++++G  + 
Sbjct: 91  ERSSRVAGVVEGTSVTTSFDGLRSLSLGKITLDH-----------RGRRGSMSVLGGTHN 139

Query: 446 IEPQPTAIAGG 478
             P    + GG
Sbjct: 140 TRPSDCPVVGG 150


>tr|A5ACT9|A5ACT9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007489 PE=4 SV=1
          Length = 1417

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 33/110 (30%), Positives = 36/110 (32%), Gaps = 3/110 (2%)
 Frame = +1

Query: 163 DFRGCGTAQGGAHHDIGRALRDAVLPERPHNGRPGGGQCTSGVGVRSVGALRPQXXXXXX 342
           DF     A  G    I R L     P      RP GGQ +  VG  S   +RP       
Sbjct: 287 DFGSLVQALYGIEEGIARGLWSESSPTDSKGKRPSGGQRSGDVGAISSAGMRPSRHYQTV 346

Query: 343 XXXXXXXXXQGQAPHPCSPAWPSWH---PEPCRPFQCYRTPTHRHSWGLP 483
                     GQ P    P  P  H   P P RP     TPT+ H    P
Sbjct: 347 ----------GQTPGYYYPPSPHAHYRPPAPSRPM----TPTYLHPVSQP 382


>tr|A5BCB7|A5BCB7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009720 PE=4 SV=1
          Length = 1003

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 32/105 (30%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
 Frame = +1

Query: 163 DFRGCGTAQGGAHHDIGRALRDAVLPERPHNGRPGGGQCTSGVGVRSVGALRPQXXXXXX 342
           DF     A  G    I R L     P      RP GGQ +  VG  S   +RP       
Sbjct: 323 DFGSLVQALYGIEEGIARGLWSESSPTDSKGKRPSGGQRSGDVGAISSAGMRPSRHYQTV 382

Query: 343 XXXXXXXXXQGQAPHPCSPAWPSWH---PEPCRPFQCYRTPTHRH 468
                     GQ P    P  P  H   P P RP     TPT+ H
Sbjct: 383 ----------GQTPGYYYPPSPHAHYRPPAPSRPM----TPTYLH 413


>tr|Q9AEU7|Q9AEU7_BURMA Putative uncharacterized protein
           OS=Burkholderia mallei PE=4 SV=1
          Length = 94

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +1

Query: 106 CKGDAAPAIPGVHPRPAECDFRGC-----GTAQGGAHHDIGRALRDAVLPERPHNGRP 264
           C G A PA+P        CD+R C     G A GG+  D  RA      P  PH+  P
Sbjct: 14  CDGAAQPALPHGTGDRCACDWRACLRVPPGRAVGGSRIDDVRAPTSPDAPRAPHSRGP 71


>tr|B8PWH4|B8PWH4_DUGBV Glycoprotein OS=Kupe virus PE=4 SV=1
          Length = 1549

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 186  GCATTTEVTFSWSWMNTWNCRCRIPLTCWPPGRRCPAC 73
            GC TTT +   W     W C    P  CW  G  C  C
Sbjct: 1032 GCTTTTCMFKEWPHTRNWRCN---PTWCWGIGTGCTCC 1066


>tr|A8TY51|A8TY51_9PROT Putative uncharacterized protein OS=alpha
           proteobacterium BAL199 GN=BAL199_22752 PE=4 SV=1
          Length = 374

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 124 PAIPGVHPRPAECDFRGCGTAQ---GGAHHDIGRALRDAVL 237
           P IP +H   +E D R C T +   GG H D GR  RDA+L
Sbjct: 293 PGIP-LHTNGSENDIRACVTRRKLSGGTHSDDGRQARDAML 332


>tr|Q9CSX9|Q9CSX9_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Rnf157 PE=2 SV=1
          Length = 159

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 25/70 (35%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 KGDAAPAIPGVHPRPAECDFRGCGTAQGGAHHDIGRALRDAVLPERPHNGRPGGGQCTSG 288
           + +AA A PG  P+P + +      A+ GA    GR+ +          GR  GGQ T  
Sbjct: 3   RSEAAAAPPGSAPQPPQAEAPPRCPAEDGARR-AGRSPQPQPQQRLSRAGR--GGQPTPA 59

Query: 289 VGVRSVGALR 318
            GVR  GALR
Sbjct: 60  PGVRPAGALR 69


>tr|Q9L0T4|Q9L0T4_STRCO Putative uncharacterized protein SCO4510
           OS=Streptomyces coelicolor GN=SCO4510 PE=4 SV=1
          Length = 135

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 309 ADRPDADPRSALSASRPAVMRSFWQNSVPKGAPNVVMGPALGC 181
           ADRPD  P  +LS +    + +F  +  P   P +V+G A GC
Sbjct: 5   ADRPDIVPSDSLSPALREAVETFAADRGPDALPPLVVGNACGC 47


>tr|A7IBR1|A7IBR1_XANP2 Putative uncharacterized protein
           OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
           Py2) GN=Xaut_0195 PE=4 SV=1
          Length = 244

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 178 GTAQGGAH-----HDIGRALRDAVLPERPHNGRPGGGQCT-SGVGVRSVGALRP 321
           G   GGAH     H  G  +   + P RP   RP GG+    G G+R V A RP
Sbjct: 83  GAPHGGAHPQPAQHGGGDGVAARICPRRPQRLRPAGGRKPGGGRGLRPVEARRP 136