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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955616
Clone id TST39A01NGRL0023_J07
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_J07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGGGAAGCTCTCTCTGCGTGAAAGACAGCTGAAAAGGATAAGACTAAGGTTTTAGCTTCT
TGTTGCATTTCTCTTGGAGAGGGTGGCCAGGCTAGATGGCCATGGCGGGGGCAACAGCAA
TCTCAGCTGCATCTTCATCATCGTATATGAGCTTAACGTCTTGCGTCTCCATTCGCAGCA
GCAGCAACAACAGCAGCACAATCGTATCCTCACCTCCCTCGCCCTCCATCTCCACTCAGA
AGACCTCTTCACAGCAGGCGCAGAGAAGGAAAACCTTGGCTGATCAACTGCAGCCCCTAT
CGACAGAGTTTCTGGAGGCGCCACCCCCTGCACGCGTGTGGCATTCTCCCACTCGCAAGA
AAGCTCGAGACTCTGTTCCTCAGCGCAGAGTAAAGCCCTCCTCTGAGGGCTCTACAATCA
GCAAAGTCATCAGCTTTCTCACAAAGGAACCTGATGCCAACCTCTCATCTCTTCTGGACT
CTGAGGTAACCTTTCTCACCTCTAAAGACATTGTTGCCATCCTGAATGCACAAACCTGCT
GGCATCAAGCTCTATTCTTCTTTGAATGGGCCAAAATCGAAGTCCTCTTTTCCTATCAAT
AGATTTGTTTACAATGTCATGCTCAAAATCTTGCGCAAGGCTGAACAGTGGGAAACTGGC
■■Homology search results ■■ -
sp_hit_id Q9LS88
Definition sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana
Align length 26
Score (bit) 30.4
E-value 0.041
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955616|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J07, 5'
         (660 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protei...    30   0.041
sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protei...    37   0.092
sp|A8K979|EXOD1_HUMAN Exonuclease domain-containing protein 1 OS...    31   5.1  
sp|Q54MJ9|SPXS3_DICDI SPX and EXS domain-containing protein 3 OS...    31   6.6  
sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protei...    30   8.6  
sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protei...    30   8.6  

>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein
           At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
          Length = 842

 Score = 30.4 bits (67), Expect(2) = 0.041
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 574 KSKSSFPINRFVYNVMLKILRKAEQW 651
           KSK  + +N   YN+ML+IL KA +W
Sbjct: 178 KSKGCYELNVIHYNIMLRILGKACKW 203



 Score = 26.6 bits (57), Expect(2) = 0.041
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 393 KPSSEGSTISKVISFLTKEPDANLSSLLDSEVTFLTSKDIVAILNAQTCWHQALFFFEWA 572
           K  S G  I  ++  L    D  +   L      L++K+   IL  Q  W +A+  FEW 
Sbjct: 120 KRLSYGGCIPAILEALDSIED--VEDALSPWAERLSNKERTIILKEQIHWERAVEIFEWF 177

Query: 573 K 575
           K
Sbjct: 178 K 178


>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic OS=Arabidopsis thaliana
           GN=At5g46580 PE=2 SV=1
          Length = 711

 Score = 37.0 bits (84), Expect = 0.092
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
 Frame = +3

Query: 273 TLADQLQPLSTEFLEAPP------PARVWHSPTRKKARDSVPQRRVKPS-SEGSTISKVI 431
           +L++QL+PLS   L          P  VW +PTR K      QR+ + + S    I  + 
Sbjct: 64  SLSEQLKPLSATTLRQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLR 123

Query: 432 SFLTK------EPDANLSSLLDSEVTFLTSKD-IVAILNAQTCWHQALFFFEWAKIEVLF 590
           +F  K         +   SLLD E+    ++D  + +LN+   W +   FF W K + LF
Sbjct: 124 AFALKLNSSIFTEKSEFLSLLD-EIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLF 182

Query: 591 SYQ*ICLQCHAQNLAQG 641
             + I      ++L  G
Sbjct: 183 PMETIFYNVTMKSLRFG 199



 Score = 31.6 bits (70), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 547 KLYSSLNGPKSKSSFPINRFVYNVMLKILRKAEQWE 654
           K ++  N  KSKS FP+    YNV +K LR   Q++
Sbjct: 168 KTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQ 203


>sp|A8K979|EXOD1_HUMAN Exonuclease domain-containing protein 1
           OS=Homo sapiens GN=EXOD1 PE=2 SV=2
          Length = 691

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 265 EGKPWLINCSPYRQSFWRRHPLHACGILPLARKLETLFLSAE*SPPL 405
           E KP   +CSP R S WRR P     IL     L+  + S + +PPL
Sbjct: 554 EEKPTSSDCSPVRSSSWRRLP----SILTSTVNLQEPWKSGKMTPPL 596


>sp|Q54MJ9|SPXS3_DICDI SPX and EXS domain-containing protein 3
           OS=Dictyostelium discoideum GN=xpr1 PE=4 SV=1
          Length = 919

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 12/59 (20%), Positives = 33/59 (55%)
 Frame = +3

Query: 294 PLSTEFLEAPPPARVWHSPTRKKARDSVPQRRVKPSSEGSTISKVISFLTKEPDANLSS 470
           P++    + PPP++   SP++ +++  +P + ++P++  +T +   S  +     N++S
Sbjct: 57  PINKSISKIPPPSQSSSSPSQSQSQIEIPLQSIEPTTTTTTTAATSSSSSSTTTTNVNS 115


>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein
           At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
          Length = 1038

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 471 LLDSEVTFLTSKDIVAILNAQTCWHQALFFFEWAKIEVLF 590
           ++ S V  L+ +D+  +L  Q  W Q   FF W K+++ +
Sbjct: 145 VMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMKLQLSY 184


>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein
           At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
          Length = 822

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 426 VISFLTKEPDANLSSLLDSEVTFLTSKDIVAI---LNAQTCWHQALFFFEW 569
           +++ + ++P   LS   DS  + L   D+V++   L+    W +A+F FEW
Sbjct: 111 LVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEW 161
tr_hit_id A9TLE9
Definition tr|A9TLE9|A9TLE9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 27
Score (bit) 34.7
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955616|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J07, 5'
         (660 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLE9|A9TLE9_PHYPA Predicted protein OS=Physcomitrella paten...    35   4e-04
tr|A9TFK6|A9TFK6_PHYPA Predicted protein OS=Physcomitrella paten...    37   6e-04
tr|A7NWY9|A7NWY9_VITVI Chromosome chr5 scaffold_2, whole genome ...    33   0.005
tr|B7ZXQ1|B7ZXQ1_MAIZE Putative uncharacterized protein OS=Zea m...    31   0.11 
tr|B6SPS8|B6SPS8_MAIZE Salt-inducible protein OS=Zea mays PE=2 SV=1    31   0.11 
tr|B4F8M2|B4F8M2_MAIZE Putative uncharacterized protein OS=Zea m...    31   0.11 
tr|A5AI36|A5AI36_VITVI Putative uncharacterized protein OS=Vitis...    29   0.79 
tr|A7PXE5|A7PXE5_VITVI Chromosome chr12 scaffold_36, whole genom...    28   1.0  
tr|Q75IP8|Q75IP8_ORYSJ Putative chloroplastic RNA-binding protei...    37   1.1  
tr|Q75IP7|Q75IP7_ORYSJ Os03g0856100 protein OS=Oryza sativa subs...    37   1.1  
tr|B8ANR5|B8ANR5_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.9  
tr|A7PBC4|A7PBC4_VITVI Chromosome chr16 scaffold_10, whole genom...    36   2.4  
tr|B4PVS4|B4PVS4_DROYA GE10789 OS=Drosophila yakuba GN=GE10789 P...    34   9.1  

>tr|A9TLE9|A9TLE9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196204 PE=4 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect(2) = 4e-04
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 574 KSKSSFPINRFVYNVMLKILRKAEQWE 654
           +++ S  +N + YNVMLK+LR+  QWE
Sbjct: 34  RAEHSSSLNIYTYNVMLKVLRRGRQWE 60



 Score = 33.1 bits (74), Expect(2) = 4e-04
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 507 DIVAILNAQTCWHQALFFFEWAKIE 581
           D+VAILN+   W QAL  F W + E
Sbjct: 12  DVVAILNSLKSWRQALLLFRWLRAE 36


>tr|A9TFK6|A9TFK6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_194612 PE=4 SV=1
          Length = 570

 Score = 37.0 bits (84), Expect(2) = 6e-04
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +1

Query: 574 KSKSSFPINRFVYNVMLKILRKAEQWE 654
           +++ +F +N + YNVMLK+LR+ +QWE
Sbjct: 34  QAEQNFNLNIYTYNVMLKVLRRGQQWE 60



 Score = 30.0 bits (66), Expect(2) = 6e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 495 LTSKDIVAILNAQTCWHQALFFFEWAKIEVLFS 593
           L   D+VAILN    W  AL  F+W + E  F+
Sbjct: 8   LNPYDVVAILNTLKSWKVALSLFKWLQAEQNFN 40


>tr|A7NWY9|A7NWY9_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020111001
           PE=4 SV=1
          Length = 862

 Score = 33.5 bits (75), Expect(2) = 0.005
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 402 SEGSTISKVISFL--TKEPDANLSSLLDSEVTFLTSKDIVAILNAQTCWHQALFFFEWAK 575
           S G  I  ++  L   K+ D  LS   +S    L++K+   IL  Q+CW +AL  FEW K
Sbjct: 132 SYGGCIPSILRALETVKDLDEALSPWEES----LSNKERSIILKEQSCWERALEIFEWLK 187



 Score = 30.4 bits (67), Expect(2) = 0.005
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 574 KSKSSFPINRFVYNVMLKILRKAEQW 651
           K K  + +N   YN+ML+IL KA +W
Sbjct: 187 KKKGCYELNVIHYNIMLRILGKARKW 212


>tr|B7ZXQ1|B7ZXQ1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 716

 Score = 30.8 bits (68), Expect(2) = 0.11
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
 Frame = +3

Query: 273 TLADQLQPLS--------TEFLEAPPPARVWHSPTRKKARDSV-----PQRRVKPSSEGS 413
           +L+ QL+PLS        T   + P P   W +PT  K + SV      +RR  P++  S
Sbjct: 55  SLSQQLEPLSRTLLHDKPTPIADRPTPEPTWVNPT--KPKPSVLSLRRHRRRSPPANTSS 112

Query: 414 T-ISKVISFLTKEP-DANLSSLLDS-------EVTFLTSKDIVAILN-AQTCWHQALFFF 563
           T +  ++  L   P DA+L+  LD+       +    +  D + +LN     W ++L   
Sbjct: 113 TPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLL 172

Query: 564 EWAK 575
            W +
Sbjct: 173 AWLR 176



 Score = 28.5 bits (62), Expect(2) = 0.11
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 586 SFPINRFVYNVMLKILRKAEQW 651
           +FP++   +NV LK LR A QW
Sbjct: 182 AFPLDTIFFNVALKSLRAARQW 203


>tr|B6SPS8|B6SPS8_MAIZE Salt-inducible protein OS=Zea mays PE=2 SV=1
          Length = 716

 Score = 30.8 bits (68), Expect(2) = 0.11
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
 Frame = +3

Query: 273 TLADQLQPLS--------TEFLEAPPPARVWHSPTRKKARDSV-----PQRRVKPSSEGS 413
           +L+ QL+PLS        T   + P P   W +PT  K + SV      +RR  P++  S
Sbjct: 55  SLSQQLEPLSRTLLHDKPTPIADRPTPEPTWVNPT--KPKPSVLSLRRHRRRSPPANTSS 112

Query: 414 T-ISKVISFLTKEP-DANLSSLLDS-------EVTFLTSKDIVAILN-AQTCWHQALFFF 563
           T +  ++  L   P DA+L+  LD+       +    +  D + +LN     W ++L   
Sbjct: 113 TPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLL 172

Query: 564 EWAK 575
            W +
Sbjct: 173 AWLR 176



 Score = 28.5 bits (62), Expect(2) = 0.11
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 586 SFPINRFVYNVMLKILRKAEQW 651
           +FP++   +NV LK LR A QW
Sbjct: 182 AFPLDTIFFNVALKSLRAARQW 203


>tr|B4F8M2|B4F8M2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 716

 Score = 30.8 bits (68), Expect(2) = 0.11
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
 Frame = +3

Query: 273 TLADQLQPLS--------TEFLEAPPPARVWHSPTRKKARDSV-----PQRRVKPSSEGS 413
           +L+ QL+PLS        T   + P P   W +PT  K + SV      +RR  P++  S
Sbjct: 55  SLSQQLEPLSRTLLHDKPTPIADRPTPEPTWVNPT--KPKPSVLSLRRHRRRSPPANTSS 112

Query: 414 T-ISKVISFLTKEP-DANLSSLLDS-------EVTFLTSKDIVAILN-AQTCWHQALFFF 563
           T +  ++  L   P DA+L+  LD+       +    +  D + +LN     W ++L   
Sbjct: 113 TPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLL 172

Query: 564 EWAK 575
            W +
Sbjct: 173 AWLR 176



 Score = 28.5 bits (62), Expect(2) = 0.11
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 586 SFPINRFVYNVMLKILRKAEQW 651
           +FP++   +NV LK LR A QW
Sbjct: 182 AFPLDTIFFNVALKSLRAARQW 203


>tr|A5AI36|A5AI36_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031421 PE=4 SV=1
          Length = 1313

 Score = 28.9 bits (63), Expect(2) = 0.79
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 366 RDSVPQRRVKPSSEGSTISKVISFLTKEPDANLSSLLDSEVTFLTSKDIVAILNAQTCWH 545
           + S+ +R+ K S    +I + +     E + N+   L S    L+ K+   IL  Q+ W 
Sbjct: 417 KTSISRRKKKYSGVLPSILRAL-----ESEXNIEDTLSS-CGKLSPKEQTVILKEQSSWE 470

Query: 546 QALFFFEWAK 575
           + L  FEW K
Sbjct: 471 RVLRVFEWIK 480



 Score = 27.3 bits (59), Expect(2) = 0.79
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 574 KSKSSFPINRFVYNVMLKILRKAEQWE 654
           KS+  +  N   YNV+L++L +A++W+
Sbjct: 480 KSQEDYVPNVIHYNVVLRVLGRAQKWD 506


>tr|A7PXE5|A7PXE5_VITVI Chromosome chr12 scaffold_36, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026007001
           PE=4 SV=1
          Length = 971

 Score = 28.5 bits (62), Expect(2) = 1.0
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 366 RDSVPQRRVKPSSEGSTISKVISFLTKEPDANLSSLLDSEVTFLTSKDIVAILNAQTCWH 545
           + S+ +R+ K S    +I + +     E + N+   L S    L+ K+   IL  Q+ W 
Sbjct: 112 KTSISRRKKKYSGVLPSILRAL-----ESENNIEDTLSS-CGKLSPKEQTVILKEQSSWE 165

Query: 546 QALFFFEWAK 575
           + L  FEW K
Sbjct: 166 RVLRVFEWIK 175



 Score = 27.3 bits (59), Expect(2) = 1.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 574 KSKSSFPINRFVYNVMLKILRKAEQWE 654
           KS+  +  N   YNV+L++L +A++W+
Sbjct: 175 KSQEDYVPNVIHYNVVLRVLGRAQKWD 201


>tr|Q75IP8|Q75IP8_ORYSJ Putative chloroplastic RNA-binding protein,
           with alternative splicing isoforms (Putative
           uncharacterized protein) (Pentatricopeptide, putative,
           expressed) OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g63910 PE=4 SV=1
          Length = 884

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = +1

Query: 382 SAE*SPPLRALQSAKSSAFSQRNLMPTSHLFWTLR*PFSPLKTLLPS*MHKPAGIKLYSS 561
           SA   P LRA+++   +A    +L PT H F+    P S    LL      P+  K  S 
Sbjct: 101 SAPLQPLLRAIRALPDAA----DLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLSL 156

Query: 562 LNGPKS--KSSFPINRFVYNVMLKILRKAEQW 651
           L   ++    +FP++  V+NV LK LR A QW
Sbjct: 157 LCWLRALPDGAFPLDTIVFNVALKSLRAARQW 188


>tr|Q75IP7|Q75IP7_ORYSJ Os03g0856100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0856100 PE=4 SV=1
          Length = 640

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
 Frame = +1

Query: 382 SAE*SPPL-RALQSAKSSAFSQRNLMPTSHLFWTLR*PFSPLKTLLPS*MHKPAGIKLYS 558
           S+  SPPL RA+++   +A    +L PT H F+    P S    LL      P+  K  S
Sbjct: 40  SSSSSPPLLRAIRALPDAA----DLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLS 95

Query: 559 SLNGPKS--KSSFPINRFVYNVMLKILRKAEQW 651
            L   ++    +FP++  V+NV LK LR A QW
Sbjct: 96  LLCWLRALPDGAFPLDTIVFNVALKSLRAARQW 128