DK955618
Clone id TST39A01NGRL0023_J09
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_J09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTCGGTATGTTTGACCTCCTTGTTCCACTTTGATCGTCGATCGTCTGTTTTGTAAGCGG
CTATGGCGTCCTCCCTCGTCGCCCGCTTGCCATCCTCGCCCTCGCCTGCCTCTACATCCT
CCGCATTTTTCCCCTTCCAACCCATTCCGCAAAGCTTACCTCTGCATAGCCATGTCCGCC
ATCTCAGATTCTCCTGGTCTGTGAATGCATCTTTAGGGGATGACACCTCCACTCAAATTG
ATGGCCCTGAGGCACCCTCTTCGTCATCATCTCCCGCCGACGCACCCTCTCCATCCACAT
CTACCGTAGTCACATCCAGTAAGCAGCCTCAAACGGTCTCTCTGAGTCTTGAGGATGTCA
ACCCTGTTGGTCTTGGTAGACGATCTCGACAGCTCTTTGATGAGGTGTGGCGTCGCTTTA
CGGAGCTCGGACAGCTTACACGATCTCCTCGGGACAGTGAGGAGTACGAAAGTGTGTTGA
TAGGAGGCCCAATGTGTGAGTTTACAATCCCTGGGGCAGAGTCCACAACTGTCCTTGTTG
CAGGTGCCACCAGTCGCGTGGGTCGGATTGTCAT
■■Homology search results ■■ -
sp_hit_id P36785
Definition sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomavirus type 17
Align length 66
Score (bit) 30.4
E-value 6.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955618|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J09, 5'
(574 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomaviru... 30 6.6
sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonic... 30 8.6

>sp|P36785|VE2_HPV17 Regulatory protein E2 OS=Human papillomavirus
type 17 GN=E2 PE=3 SV=1
Length = 452

Score = 30.4 bits (67), Expect = 6.6
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1

Query: 529 VVDSAPGIVNSHIGPPINTLSYSSLSRGDRVSCPSSVKRRHTSSKSCRDRLPRPTGLTSS 350
V S+P PIN S SS +RG + S+ + TS + R + PT T+
Sbjct: 198 VTSSSPAAGEGTDASPINAASRSSPARGLSATSVSTRTTQRTSPRRYRRKASSPTATTTR 257

Query: 349 RLRETV 332
R+ +
Sbjct: 258 HKRQDI 263


>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica
GN=CYCD4-2 PE=2 SV=2
Length = 383

Score = 30.0 bits (66), Expect = 8.6
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = -1

Query: 574 MTIRPTRLVAPATRTVVDSAPGIVNSHIGPPINTLSYSSLSRGDRVSCPSSVKRRHTSSK 395
+ RP+ + A TV A G+V I +++ + +G + C +++ H S
Sbjct: 253 LEFRPSEIAAAVAATVAGEATGVVEEDIAE-----AFTHVDKGRVLQCQEAIQDHHYSMA 307

Query: 394 SCRDRLPRP 368
+ P+P
Sbjct: 308 TINTVQPKP 316


tr_hit_id B8LQR3
Definition tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 77
Score (bit) 132.0
E-value 1.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955618|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J09, 5'
(574 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea... 132 1e-29
tr|A7Q4K0|A7Q4K0_VITVI Chromosome chr9 scaffold_49, whole genome... 114 3e-24
tr|A9TUM7|A9TUM7_PHYPA Predicted protein OS=Physcomitrella paten... 112 1e-23
tr|A9PHQ9|A9PHQ9_POPTR Putative uncharacterized protein OS=Popul... 110 4e-23
tr|Q9FWQ6|Q9FWQ6_ARATH F17F16.7 protein OS=Arabidopsis thaliana ... 108 3e-22
tr|Q8W4D6|Q8W4D6_ARATH Putative uncharacterized protein At1g1672... 108 3e-22
tr|A9SR28|A9SR28_PHYPA Predicted protein OS=Physcomitrella paten... 106 1e-21
tr|Q84P75|Q84P75_ORYSJ Putative uncharacterized protein OS=Oryza... 103 7e-21
tr|Q6YXY0|Q6YXY0_ORYSJ Os02g0137700 protein OS=Oryza sativa subs... 103 7e-21
tr|Q5Z8V8|Q5Z8V8_ORYSJ Os06g0704700 protein OS=Oryza sativa subs... 103 7e-21
tr|A3A2Y6|A3A2Y6_ORYSJ Putative uncharacterized protein OS=Oryza... 103 7e-21
tr|A2YGS4|A2YGS4_ORYSI Putative uncharacterized protein OS=Oryza... 103 7e-21
tr|A2X0N8|A2X0N8_ORYSI Putative uncharacterized protein OS=Oryza... 103 7e-21
tr|Q00TV5|Q00TV5_OSTTA Putative UOS1 (ISS) OS=Ostreococcus tauri... 70 8e-11
tr|A4S8P7|A4S8P7_OSTLU Predicted protein (Fragment) OS=Ostreococ... 62 2e-08
tr|A8HTK2|A8HTK2_CHLRE Predicted protein OS=Chlamydomonas reinha... 57 7e-07
tr|Q5C0S3|Q5C0S3_SCHJA SJCHGC02679 protein (Fragment) OS=Schisto... 35 2.3
tr|A8LJY8|A8LJY8_DINSH Putative uncharacterized protein OS=Dinor... 35 2.3
tr|A1L2N9|A1L2N9_XENLA LOC100036905 protein OS=Xenopus laevis GN... 34 5.0
tr|B4PFD4|B4PFD4_DROYA GE22425 OS=Drosophila yakuba GN=GE22425 P... 34 6.5
tr|B4IVY9|B4IVY9_DROYA GE14716 OS=Drosophila yakuba GN=GE14716 P... 34 6.5

>tr|B8LQR3|B8LQR3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 516

Score = 132 bits (332), Expect = 1e-29
Identities = 60/77 (77%), Positives = 72/77 (93%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEYESVLIGGPMCEFTIPGAE 521
LSL+DVNPVGLGR+SRQ+FDEVWR+F+ELGQL+R+PR+ EEY+SVL+GGPMCEFTIP A
Sbjct: 79 LSLDDVNPVGLGRKSRQIFDEVWRKFSELGQLSRTPRNDEEYDSVLVGGPMCEFTIPAAA 138

Query: 522 STTVLVAGATSRVGRIV 572
TTVLV GATSR+GRI+
Sbjct: 139 DTTVLVVGATSRIGRIL 155


>tr|A7Q4K0|A7Q4K0_VITVI Chromosome chr9 scaffold_49, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029723001
PE=4 SV=1
Length = 498

Score = 114 bits (286), Expect = 3e-24
Identities = 53/77 (68%), Positives = 66/77 (85%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEYESVLIGGPMCEFTIPGAE 521
+SL+DVNPVGLGR+SRQ+FDEVWR+F+ LGQ++R+ R EE + GGPMCEF IPGA+
Sbjct: 2 ISLDDVNPVGLGRKSRQIFDEVWRKFSGLGQISRTTRTDEETLLIREGGPMCEFAIPGAQ 61

Query: 522 STTVLVAGATSRVGRIV 572
+TTVLV GATSR+GRIV
Sbjct: 62 NTTVLVVGATSRIGRIV 78


>tr|A9TUM7|A9TUM7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_151003 PE=4 SV=1
Length = 509

Score = 112 bits (280), Expect = 1e-23
Identities = 55/79 (69%), Positives = 64/79 (81%), Gaps = 2/79 (2%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEY--ESVLIGGPMCEFTIPG 515
LSL+DVNPVGLGRR+RQ+FD WRR T LGQLT + R S+EY E V++GGPMC+F P
Sbjct: 5 LSLDDVNPVGLGRRTRQVFDAAWRRLTNLGQLTSASRPSDEYDFEKVVVGGPMCDFQTPN 64

Query: 516 AESTTVLVAGATSRVGRIV 572
AE TTVLVAGAT RVGRI+
Sbjct: 65 AELTTVLVAGATGRVGRIL 83


>tr|A9PHQ9|A9PHQ9_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 584

Score = 110 bits (276), Expect = 4e-23
Identities = 55/80 (68%), Positives = 69/80 (86%), Gaps = 3/80 (3%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPR--DSEEYESVLI-GGPMCEFTIP 512
L+LEDVNPVGLGR+SRQ+FDEVWR+F+ LGQ++R+ R D E +++LI GPMCEF IP
Sbjct: 85 LNLEDVNPVGLGRKSRQIFDEVWRKFSGLGQISRTTRADDKEALDALLIREGPMCEFAIP 144

Query: 513 GAESTTVLVAGATSRVGRIV 572
GA++TTVLV GATSR+GRIV
Sbjct: 145 GAQNTTVLVVGATSRIGRIV 164


>tr|Q9FWQ6|Q9FWQ6_ARATH F17F16.7 protein OS=Arabidopsis thaliana
GN=F17F16.7 PE=4 SV=1
Length = 583

Score = 108 bits (269), Expect = 3e-22
Identities = 53/80 (66%), Positives = 67/80 (83%), Gaps = 3/80 (3%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRS--PRDSEEYESVLI-GGPMCEFTIP 512
L L+DVNPVGLGRRSRQ+FDEVWR+F+ LGQ++R+ P + E +S+LI GPMCEF +P
Sbjct: 90 LKLDDVNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVP 149

Query: 513 GAESTTVLVAGATSRVGRIV 572
GA++ TVLV GATSR+GRIV
Sbjct: 150 GAQNVTVLVVGATSRIGRIV 169


>tr|Q8W4D6|Q8W4D6_ARATH Putative uncharacterized protein At1g16720;
F17F16.7 (Putative uncharacterized protein At1g16720)
OS=Arabidopsis thaliana GN=At1g16720/F17F16.7 PE=2 SV=1
Length = 598

Score = 108 bits (269), Expect = 3e-22
Identities = 53/80 (66%), Positives = 67/80 (83%), Gaps = 3/80 (3%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRS--PRDSEEYESVLI-GGPMCEFTIP 512
L L+DVNPVGLGRRSRQ+FDEVWR+F+ LGQ++R+ P + E +S+LI GPMCEF +P
Sbjct: 99 LKLDDVNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVP 158

Query: 513 GAESTTVLVAGATSRVGRIV 572
GA++ TVLV GATSR+GRIV
Sbjct: 159 GAQNVTVLVVGATSRIGRIV 178


>tr|A9SR28|A9SR28_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_187481 PE=4 SV=1
Length = 509

Score = 106 bits (264), Expect = 1e-21
Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 2/79 (2%)
Frame = +3

Query: 342 LSLEDVNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDSEEY--ESVLIGGPMCEFTIPG 515
++L+DVNPV LGRR+RQ+FD+ WRR T+LG LT + R S+EY E+V++GGPMC+F P
Sbjct: 5 ITLDDVNPVRLGRRTRQVFDDAWRRLTKLGLLTSASRPSDEYDFETVVVGGPMCDFQTPN 64

Query: 516 AESTTVLVAGATSRVGRIV 572
AE TTVL+AGAT RVGRI+
Sbjct: 65 AELTTVLIAGATGRVGRIL 83


>tr|Q84P75|Q84P75_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica PE=2 SV=1
Length = 500

Score = 103 bits (257), Expect = 7e-21
Identities = 51/75 (68%), Positives = 64/75 (85%), Gaps = 3/75 (4%)
Frame = +3

Query: 357 VNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDS--EEYESVLI-GGPMCEFTIPGAEST 527
V+PVGLGRRSRQ+FDEVWR+F+ LGQ++ + + EE ++VLI GGPMCEFT+PGA+ T
Sbjct: 7 VSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDT 66

Query: 528 TVLVAGATSRVGRIV 572
TVLV GATSR+GRIV
Sbjct: 67 TVLVVGATSRIGRIV 81


>tr|Q6YXY0|Q6YXY0_ORYSJ Os02g0137700 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0026E05.10 PE=4 SV=1
Length = 598

Score = 103 bits (257), Expect = 7e-21
Identities = 53/82 (64%), Positives = 66/82 (80%), Gaps = 5/82 (6%)
Frame = +3

Query: 342 LSLEDV--NPVGLGRRSRQLFDEVWRRFTELGQL-TRSPRDSEEYESVLI--GGPMCEFT 506
++L+DV NPVGLGRRSRQ+FDEVWR+F+ LGQ+ T + + EE E VL GGPMC+F
Sbjct: 98 VALDDVIVNPVGLGRRSRQIFDEVWRKFSRLGQMSTVASPEQEEQEGVLFRGGGPMCDFA 157

Query: 507 IPGAESTTVLVAGATSRVGRIV 572
+PGA+ TTVLV GATSR+GRIV
Sbjct: 158 VPGAQDTTVLVVGATSRIGRIV 179


>tr|Q5Z8V8|Q5Z8V8_ORYSJ Os06g0704700 protein OS=Oryza sativa subsp.
japonica GN=P0018H04.3 PE=2 SV=1
Length = 648

Score = 103 bits (257), Expect = 7e-21
Identities = 51/75 (68%), Positives = 64/75 (85%), Gaps = 3/75 (4%)
Frame = +3

Query: 357 VNPVGLGRRSRQLFDEVWRRFTELGQLTRSPRDS--EEYESVLI-GGPMCEFTIPGAEST 527
V+PVGLGRRSRQ+FDEVWR+F+ LGQ++ + + EE ++VLI GGPMCEFT+PGA+ T
Sbjct: 155 VSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDT 214

Query: 528 TVLVAGATSRVGRIV 572
TVLV GATSR+GRIV
Sbjct: 215 TVLVVGATSRIGRIV 229