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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955624
Clone id TST39A01NGRL0023_J16
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_J16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTTGGTTGGATTGCTCCCTCTTGGGATTCAGATTATTGACATCCTGCTAAACTGTGTCGG
GTACACAGCTTTCAAGTTTTGTGTCCAGTCTGCATGTACAATAGCTGATAAGAATTGGAA
GCAATATACATTTACTTTTGAATGCATGATGTGCAGCTGGGCAGCAAGGCTTTGAGGAAA
GAGAGCATGGTTCCAATTGAGTGCAAAGAGGTTTATGTCTTCCAGAAGTAATGATTGTAG
TCCTATGGTTTAAATATAATCAGTCCATCCCTTGCCAGAACGCTTTAATAACGTGCTTAA
GGTAGTCTTGCATCAGGCTTGATTTTGGACAGGCACCTTTGCCCATAAAATTACAAGGAT
TTTACGTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q924B5
Definition sp|Q924B5|TX101_RAT Testis-expressed protein 101 OS=Rattus norvegicus
Align length 75
Score (bit) 37.0
E-value 0.031
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955624|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J16, 5'
         (359 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q924B5|TX101_RAT Testis-expressed protein 101 OS=Rattus norve...    37   0.031
sp|Q9VLT1|MON2_DROME Protein MON2 homolog OS=Drosophila melanoga...    32   1.3  
sp|Q0ABH8|EFG_ALHEH Elongation factor G OS=Alkalilimnicola ehrli...    31   2.2  
sp|A1TYJ4|EFG_MARAV Elongation factor G OS=Marinobacter aquaeole...    30   3.8  
sp|Q29L43|MON2_DROPS Protein MON2 homolog OS=Drosophila pseudoob...    29   6.5  
sp|Q0VSL8|EFG_ALCBS Elongation factor G OS=Alcanivorax borkumens...    29   8.4  
sp|Q5EAK6|ATM_DROME Serine/threonine-protein kinase ATM OS=Droso...    29   8.4  

>sp|Q924B5|TX101_RAT Testis-expressed protein 101 OS=Rattus
           norvegicus GN=Tex101 PE=1 SV=1
          Length = 250

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
 Frame = -2

Query: 241 TTIITSGRHKPLCTQLEPCSLS-SKPCCPAAHHAFKSKCIL------LPILISYCT---- 95
           T+ ++  RH P C  LEPCS + S PC       +  K  L        + +  CT    
Sbjct: 132 TSNMSGARHCPTCLALEPCSSAPSMPCANGTTQCYHGKIELSGGGMDSVVHVKGCTTAIG 191

Query: 94  CRLDTKLESCVPDTV 50
           CRL  K+ES  P TV
Sbjct: 192 CRLMAKMESVGPMTV 206


>sp|Q9VLT1|MON2_DROME Protein MON2 homolog OS=Drosophila
           melanogaster GN=CG8683 PE=1 SV=4
          Length = 1684

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 259 LYLNHRTTIITSGRHKPLCTQLEPCSLSS 173
           L+ +H T +IT   HKPLC QL   S S+
Sbjct: 497 LHPSHNTAVITEEEHKPLCLQLVNSSWSA 525


>sp|Q0ABH8|EFG_ALHEH Elongation factor G OS=Alkalilimnicola
           ehrlichei (strain MLHE-1) GN=fusA PE=3 SV=1
          Length = 699

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 283 AFWQGMD*LYLNHRTTIITSGRHKPLCTQLE 191
           AFWQGMD  Y  HR  II +  H     ++E
Sbjct: 70  AFWQGMDQQYPQHRINIIDTPGHVDFTIEVE 100


>sp|A1TYJ4|EFG_MARAV Elongation factor G OS=Marinobacter aquaeolei
           (strain ATCC 700491 / DSM 11845 / VT8) GN=fusA PE=3 SV=1
          Length = 701

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 289 IKAFWQGMD*LYLNHRTTIITSGRHKPLCTQLE 191
           +  FWQGMD  Y  HR  II +  H     ++E
Sbjct: 68  VTTFWQGMDKQYPEHRINIIDTPGHVDFTIEVE 100


>sp|Q29L43|MON2_DROPS Protein MON2 homolog OS=Drosophila
           pseudoobscura pseudoobscura GN=GA16450 PE=3 SV=2
          Length = 1701

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 259 LYLNHRTTIITSGRHKPLCTQLEPCSLS 176
           L+  H T +IT   H+PLC QL   S S
Sbjct: 507 LHPTHNTAVITEEEHQPLCLQLVNSSWS 534


>sp|Q0VSL8|EFG_ALCBS Elongation factor G OS=Alcanivorax borkumensis
           (strain SK2 / ATCC 700651 / DSM 11573) GN=fusA PE=3 SV=1
          Length = 699

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 280 FWQGMD*LYLNHRTTIITSGRHKPLCTQLE 191
           FWQGMD  Y  HR  II +  H     ++E
Sbjct: 71  FWQGMDQQYDQHRINIIDTPGHVDFTIEVE 100


>sp|Q5EAK6|ATM_DROME Serine/threonine-protein kinase ATM
           OS=Drosophila melanogaster GN=tefu PE=2 SV=1
          Length = 2767

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 183 LFPQSLAAQLHIMHSKVNVYCFQFLSAIVHADWTQNL 73
           LF Q ++  LH M+ K+++  F  L   VH  W Q L
Sbjct: 275 LFFQCVSKSLHSMYLKMDMCDFNTLGVPVHEKWPQTL 311
tr_hit_id B4KRD3
Definition tr|B4KRD3|B4KRD3_DROMO GI20459 OS=Drosophila mojavensis
Align length 69
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955624|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J16, 5'
         (359 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4KRD3|B4KRD3_DROMO GI20459 OS=Drosophila mojavensis GN=GI204...    33   5.5  
tr|A1WCB0|A1WCB0_ACISJ Acetyl-CoA acetyltransferases OS=Acidovor...    33   7.2  
tr|B7D823|B7D823_9BURK Acetyl-CoA acetyltransferase OS=Diaphorob...    33   7.2  
tr|B7WX67|B7WX67_COMTE Acetyl-CoA acetyltransferase OS=Comamonas...    33   9.4  

>tr|B4KRD3|B4KRD3_DROMO GI20459 OS=Drosophila mojavensis GN=GI20459
           PE=4 SV=1
          Length = 130

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 259 LYLNHRTTIITSGRHKPLCTQLEPCSL--SSKPCCPAAHHAFKSKCILLPILISYCTCRL 86
           +Y N R  ++  G    LC     C+L  ++K  CP + H     C  LP+  + C   L
Sbjct: 45  VYPNDRHCVLVGG----LCVHTSDCNLPTTNKGLCPTSAHLGVECCYELPVRPAPCAQHL 100

Query: 85  DTKLESCVP 59
              + SC P
Sbjct: 101 GACMRSCNP 109


>tr|A1WCB0|A1WCB0_ACISJ Acetyl-CoA acetyltransferases OS=Acidovorax
           sp. (strain JS42) GN=Ajs_3776 PE=3 SV=1
          Length = 396

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -3

Query: 225 LEDINLFALNWNHALFPQSLAAQLHIMHSKVNVY 124
           ++D++L+ +N   A+ P +L A+L++ H KVNV+
Sbjct: 311 VQDVDLWEVNEAFAVVPMALMAELNVPHDKVNVH 344


>tr|B7D823|B7D823_9BURK Acetyl-CoA acetyltransferase
           OS=Diaphorobacter sp. TPSY GN=DtpsyDRAFT_2636 PE=4 SV=1
          Length = 396

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -3

Query: 225 LEDINLFALNWNHALFPQSLAAQLHIMHSKVNVY 124
           ++D++L+ +N   A+ P +L A+L++ H KVNV+
Sbjct: 311 VQDVDLWEVNEAFAVVPMALMAELNVPHDKVNVH 344


>tr|B7WX67|B7WX67_COMTE Acetyl-CoA acetyltransferase OS=Comamonas
           testosteroni KF-1 GN=CtesDRAFT_PD4608 PE=4 SV=1
          Length = 394

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 225 LEDINLFALNWNHALFPQSLAAQLHIMHSKVNV 127
           +ED++L+ +N   A+ P +L A L + H KVNV
Sbjct: 309 VEDVDLWEINEAFAVVPMALMADLKVSHDKVNV 341