DK955625
Clone id TST39A01NGRL0023_J17
Library
Length 343
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_J17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGCAACTTCGGCACAGACAGTTGAATTGAAAGTGGCTATGAGTTGCCAAGGTTGTGTTGG
TGCAGTGAAGAGGGTGCTTAGGGAAGATGGAAGGGGTAAATACATATGATATAGACTGGC
ATCCGTTTAACGCCACGGACAAAGGTATCGTAAAGCCAGAGGATGTTCTTTCTACTGTTT
CCAAAACTGGGAAAGCTACATCGTTTTGGCCAAGTGAAGGAAGTACAGCATCATAGTTTT
ATTTGTAAATTGATTTTTGGCTATTGTGACAAGAGCTATGCTCATGAAGTGGCTGATGAT
TAAAAAAACTCTTGCATACTAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6BK66
Definition sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
Align length 39
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955625|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J17, 5'
(320 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=... 32 1.3
sp|O29901|COPZ_ARCFU Copper chaperone copZ OS=Archaeoglobus fulg... 30 3.7
sp|A4H215|D107A_GORGO Beta-defensin 107A OS=Gorilla gorilla gori... 30 4.8
sp|Q01954|BNC1_HUMAN Zinc finger protein basonuclin-1 OS=Homo sa... 30 4.8
sp|A4H216|D107A_PONPY Beta-defensin 107A OS=Pongo pygmaeus GN=DE... 29 6.3
sp|A4H218|D107A_MACFA Beta-defensin 107A OS=Macaca fascicularis ... 29 6.3
sp|A4H217|D107A_HYLLA Beta-defensin 107A OS=Hylobates lar GN=DEF... 29 6.3
sp|Q54F73|CCS_DICDI Probable copper chaperone for superoxide dis... 29 6.3
sp|O00244|ATOX1_HUMAN Copper transport protein ATOX1 OS=Homo sap... 29 6.3
sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmis... 29 8.2
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transm... 29 8.2

>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone
OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2
Length = 250

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGK 194
L + G++ YDID T +G V P +++ + TGK
Sbjct: 26 LKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGK 64


>sp|O29901|COPZ_ARCFU Copper chaperone copZ OS=Archaeoglobus
fulgidus GN=copZ PE=1 SV=1
Length = 204

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2

Query: 8 SAQTVELKV-AMSCQGCVGAVKRVLREDG 91
+A+ VE+K+ ++C GCV AVK L E G
Sbjct: 136 AAKRVEIKLDGLTCMGCVSAVKAALEEAG 164


>sp|A4H215|D107A_GORGO Beta-defensin 107A OS=Gorilla gorilla gorilla
GN=DEFB107A PE=3 SV=1
Length = 66

Score = 29.6 bits (65), Expect = 4.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1

Query: 160 RMFFLLFPKLGKLHRFGQVKEVQHHSFICKLIFGYCD 270
++FF +F L L + Q + H + ICK + G+C+
Sbjct: 2 KIFFFIFAALFLLAQIFQARTAIHRALICKRMEGHCE 38


>sp|Q01954|BNC1_HUMAN Zinc finger protein basonuclin-1 OS=Homo
sapiens GN=BNC1 PE=1 SV=2
Length = 994

Score = 29.6 bits (65), Expect = 4.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2

Query: 220 PSLGQNDVAFPVLETVERTSSGFTIPLSVALNGCQSISYVFTPSIFPKHPL 68
P++GQN V FP L+TV+ + P + A TP I P PL
Sbjct: 470 PNIGQNGVLFPNLKTVQPVLPFYRSPATPA-------EVANTPGILPSLPL 513


>sp|A4H216|D107A_PONPY Beta-defensin 107A OS=Pongo pygmaeus
GN=DEFB107A PE=3 SV=1
Length = 66

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1

Query: 160 RMFFLLFPKLGKLHRFGQVKEVQHHSFICKLIFGYCD 270
++FF +F L L + Q + H + ICK + G+C+
Sbjct: 2 KIFFFIFAALILLAQIFQARTAIHRALICKRMEGHCE 38


>sp|A4H218|D107A_MACFA Beta-defensin 107A OS=Macaca fascicularis
GN=DEFB107A PE=3 SV=1
Length = 66

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1

Query: 160 RMFFLLFPKLGKLHRFGQVKEVQHHSFICKLIFGYCD 270
++FF +F L L + Q + H + ICK + G+C+
Sbjct: 2 KIFFFIFAALILLAQIFQARTAIHRALICKRMEGHCE 38


>sp|A4H217|D107A_HYLLA Beta-defensin 107A OS=Hylobates lar
GN=DEFB107A PE=3 SV=1
Length = 66

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1

Query: 160 RMFFLLFPKLGKLHRFGQVKEVQHHSFICKLIFGYCD 270
++FF +F L L + Q + H + ICK + G+C+
Sbjct: 2 KIFFFIFAALILLAQIFQARTAIHRALICKRMEGHCE 38


>sp|Q54F73|CCS_DICDI Probable copper chaperone for superoxide
dismutase OS=Dictyostelium discoideum GN=ccs PE=3 SV=1
Length = 316

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2

Query: 20 VELKVAMSCQGCVGAVKRVLRE 85
VEL V +SCQ CV ++ + LRE
Sbjct: 10 VELNVDISCQSCVDSISKELRE 31


>sp|O00244|ATOX1_HUMAN Copper transport protein ATOX1 OS=Homo
sapiens GN=ATOX1 PE=1 SV=1
Length = 68

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2

Query: 23 ELKVAMSCQGCVGAVKRVLREDGRGKY 103
E V M+C GC AV RVL + G KY
Sbjct: 5 EFSVDMTCGGCAEAVSRVLNKLGGVKY 31


>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) GN=1a PE=1
SV=1
Length = 4017

Score = 28.9 bits (63), Expect = 8.2
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -2

Query: 190 PVLETVERTSSGFTIPLSVALNGCQSISYVF---TPSIFPKHPLHCTN 56
P +T RT+ IP+ V +NG YV T KH +C N
Sbjct: 2056 PSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKN 2103


tr_hit_id A9NJS2
Definition tr|A9NJS2|A9NJS2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 62.4
E-value 6.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955625|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_J17, 5'
(320 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NJS2|A9NJS2_PICSI Putative uncharacterized protein OS=Picea... 62 6e-15
tr|Q5ZF67|Q5ZF67_PLAMJ Copper chaperone OS=Plantago major GN=cch... 59 6e-15
tr|B6SPL7|B6SPL7_MAIZE Copper chaperone OS=Zea mays PE=4 SV=1 60 1e-14
tr|Q94BT9|Q94BT9_ARATH At1g66240/T6J19_6 OS=Arabidopsis thaliana... 62 2e-14
tr|Q9SE04|Q9SE04_ORYSA Copper chaperone homolog CCH OS=Oryza sat... 62 3e-14
tr|Q6H759|Q6H759_ORYSJ Os02g0530100 protein OS=Oryza sativa subs... 62 3e-14
tr|A2X5L0|A2X5L0_ORYSI Putative uncharacterized protein OS=Oryza... 62 3e-14
tr|Q6J338|Q6J338_9ROSI Copper chaperone OS=Populus alba x Populu... 60 5e-14
tr|A9PIL5|A9PIL5_POPJC Putative uncharacterized protein OS=Popul... 60 5e-14
tr|A9PCL8|A9PCL8_POPTR Putative uncharacterized protein OS=Popul... 60 5e-14
tr|O82089|O82089_ARATH Copper homeostasis factor (AT3g56240/F18O... 59 5e-14
tr|B6T1K0|B6T1K0_MAIZE Copper chaperone OS=Zea mays PE=4 SV=1 60 6e-14
tr|Q84KJ2|Q84KJ2_SOLLC Copper chaperone OS=Solanum lycopersicum ... 59 8e-14
tr|B2CM19|B2CM19_SOLCH Copper chaperone OS=Solanum chacoense PE=... 59 8e-14
tr|Q5QL92|Q5QL92_ORYSJ cDNA clone:001-016-H06, full insert seque... 62 1e-13
tr|A7QBE3|A7QBE3_VITVI Chromosome chr13 scaffold_74, whole genom... 61 1e-13
tr|Q70DK1|Q70DK1_HORVD Chopper chaperone OS=Hordeum vulgare var.... 62 1e-13
tr|B6ST82|B6ST82_MAIZE Putative uncharacterized protein OS=Zea m... 61 1e-13
tr|B6SQL3|B6SQL3_MAIZE Putative uncharacterized protein OS=Zea m... 61 1e-13
tr|B6SHX8|B6SHX8_MAIZE Putative uncharacterized protein OS=Zea m... 61 1e-13
tr|A9P875|A9P875_POPTR Putative uncharacterized protein OS=Popul... 60 1e-13
tr|A1ECK4|A1ECK4_9ROSI Putative copper chaperone OS=Citrus hybri... 57 4e-13
tr|A9SR07|A9SR07_PHYPA Predicted protein OS=Physcomitrella paten... 57 7e-13
tr|Q6ZCF3|Q6ZCF3_ORYSJ Os08g0205400 protein OS=Oryza sativa subs... 57 9e-13
tr|A2YSB2|A2YSB2_ORYSI Putative uncharacterized protein OS=Oryza... 57 9e-13
tr|Q9SE03|Q9SE03_SOYBN Copper chaperone homolog CCH OS=Glycine m... 55 3e-12
tr|B7FJ81|B7FJ81_MEDTR Putative uncharacterized protein OS=Medic... 56 1e-11
tr|Q9C7U6|Q9C7U6_ARATH Copper homeostasis factor, putative; 2714... 62 2e-11
tr|B2MUN5|B2MUN5_9CARY Copper chaperone protein OS=Knorringia si... 52 3e-11
tr|B5M1W7|B5M1W7_RHEAU Copper homeostasis factor OS=Rheum austra... 51 6e-11

>tr|A9NJS2|A9NJS2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 75

Score = 62.4 bits (150), Expect(2) = 6e-15
Identities = 31/51 (60%), Positives = 34/51 (66%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSEGSTA 230
L KMEGV TYD++ T KG VKP+ VL TVSKTGK TSFWP E A
Sbjct: 24 LNKMEGVETYDVNLKEQKVTVKGNVKPDAVLQTVSKTGKETSFWPEEKDIA 74



Score = 42.4 bits (98), Expect(2) = 6e-15
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVLRE 85
A+TV LKV MSC+GCVGAVKRVL +
Sbjct: 2 AETVVLKVGMSCEGCVGAVKRVLNK 26


>tr|Q5ZF67|Q5ZF67_PLAMJ Copper chaperone OS=Plantago major GN=cch1
PE=4 SV=1
Length = 109

Score = 58.9 bits (141), Expect(2) = 6e-15
Identities = 29/49 (59%), Positives = 33/49 (67%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSEGS 224
LGKMEGV ++DID T KG V+ E VL TVSKTGK T FWP E +
Sbjct: 24 LGKMEGVESFDIDIEKQKVTVKGNVEKEAVLQTVSKTGKKTEFWPEEAA 72



Score = 45.8 bits (107), Expect(2) = 6e-15
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVL 79
+QTVELKV MSCQGCVGAVKRVL
Sbjct: 2 SQTVELKVGMSCQGCVGAVKRVL 24


>tr|B6SPL7|B6SPL7_MAIZE Copper chaperone OS=Zea mays PE=4 SV=1
Length = 84

Score = 60.5 bits (145), Expect(2) = 1e-14
Identities = 30/51 (58%), Positives = 35/51 (68%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSEGSTA 230
LGKMEGV +YD+D T KG V P+ VL TVSKTGK TSFW +E T+
Sbjct: 24 LGKMEGVESYDVDIMEQKVTVKGNVTPDAVLQTVSKTGKKTSFWEAEAVTS 74



Score = 43.1 bits (100), Expect(2) = 1e-14
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVL 79
AQTV LKV MSC+GCVGAVKRVL
Sbjct: 2 AQTVVLKVGMSCEGCVGAVKRVL 24


>tr|Q94BT9|Q94BT9_ARATH At1g66240/T6J19_6 OS=Arabidopsis thaliana
GN=At1g66240 PE=4 SV=1
Length = 106

Score = 62.0 bits (149), Expect(2) = 2e-14
Identities = 29/51 (56%), Positives = 37/51 (72%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSEGSTA 230
LGKMEGV ++D+D T KG V+P+ VL TV+KTGK T+FW +EG TA
Sbjct: 54 LGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKTGKKTAFWEAEGETA 104



Score = 41.2 bits (95), Expect(2) = 2e-14
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVL 79
+QTV L+VAM+C+GCVGAVKRVL
Sbjct: 32 SQTVVLRVAMTCEGCVGAVKRVL 54


>tr|Q9SE04|Q9SE04_ORYSA Copper chaperone homolog CCH OS=Oryza sativa
PE=2 SV=1
Length = 132

Score = 61.6 bits (148), Expect(2) = 3e-14
Identities = 31/47 (65%), Positives = 32/47 (68%)
Frame = +3

Query: 69 RGCLGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFW 209
R L KMEGV T+DID T KG VKPEDV TVSKTGK TSFW
Sbjct: 22 RRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSFW 68



Score = 40.8 bits (94), Expect(2) = 3e-14
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2

Query: 8 SAQTVELKVAMSCQGCVGAVKRVL 79
+A+TV LKV MSCQGC GAV+RVL
Sbjct: 2 AAETVVLKVGMSCQGCAGAVRRVL 25


>tr|Q6H759|Q6H759_ORYSJ Os02g0530100 protein OS=Oryza sativa subsp.
japonica GN=P0476H10.30-1 PE=4 SV=1
Length = 132

Score = 61.6 bits (148), Expect(2) = 3e-14
Identities = 31/47 (65%), Positives = 32/47 (68%)
Frame = +3

Query: 69 RGCLGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFW 209
R L KMEGV T+DID T KG VKPEDV TVSKTGK TSFW
Sbjct: 22 RRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSFW 68



Score = 40.8 bits (94), Expect(2) = 3e-14
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2

Query: 8 SAQTVELKVAMSCQGCVGAVKRVL 79
+A+TV LKV MSCQGC GAV+RVL
Sbjct: 2 AAETVVLKVGMSCQGCAGAVRRVL 25


>tr|A2X5L0|A2X5L0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_07492 PE=4 SV=1
Length = 132

Score = 61.6 bits (148), Expect(2) = 3e-14
Identities = 31/47 (65%), Positives = 32/47 (68%)
Frame = +3

Query: 69 RGCLGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFW 209
R L KMEGV T+DID T KG VKPEDV TVSKTGK TSFW
Sbjct: 22 RRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSFW 68



Score = 40.8 bits (94), Expect(2) = 3e-14
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2

Query: 8 SAQTVELKVAMSCQGCVGAVKRVL 79
+A+TV LKV MSCQGC GAV+RVL
Sbjct: 2 AAETVVLKVGMSCQGCAGAVRRVL 25


>tr|Q6J338|Q6J338_9ROSI Copper chaperone OS=Populus alba x Populus
tremula var. glandulosa GN=CCH PE=4 SV=1
Length = 85

Score = 59.7 bits (143), Expect(2) = 5e-14
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSE 218
LGKMEGV +YDID T KG V+P+ VL TVSKTGK T+FW +E
Sbjct: 24 LGKMEGVESYDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWEAE 70



Score = 42.0 bits (97), Expect(2) = 5e-14
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVL 79
+QTV LKV MSC+GCVGAVKRVL
Sbjct: 2 SQTVVLKVGMSCEGCVGAVKRVL 24


>tr|A9PIL5|A9PIL5_POPJC Putative uncharacterized protein OS=Populus
jackii PE=4 SV=1
Length = 85

Score = 59.7 bits (143), Expect(2) = 5e-14
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSE 218
LGKMEGV +YDID T KG V+P+ VL TVSKTGK T+FW +E
Sbjct: 24 LGKMEGVESYDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWEAE 70



Score = 42.0 bits (97), Expect(2) = 5e-14
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVL 79
+QTV LKV MSC+GCVGAVKRVL
Sbjct: 2 SQTVVLKVGMSCEGCVGAVKRVL 24


>tr|A9PCL8|A9PCL8_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 85

Score = 59.7 bits (143), Expect(2) = 5e-14
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +3

Query: 78 LGKMEGVNTYDIDWHPFNATDKGIVKPEDVLSTVSKTGKATSFWPSE 218
LGKMEGV +YDID T KG V+P+ VL TVSKTGK T+FW +E
Sbjct: 24 LGKMEGVESYDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWEAE 70



Score = 42.0 bits (97), Expect(2) = 5e-14
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 11 AQTVELKVAMSCQGCVGAVKRVL 79
+QTV LKV MSC+GCVGAVKRVL
Sbjct: 2 SQTVVLKVGMSCEGCVGAVKRVL 24