DK955626 |
Clone id |
TST39A01NGRL0023_J18 |
Library |
TST39 |
Length |
802 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_J18. 5' end sequence. |
Accession |
DK955626 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL491Contig1 |
Sequence |
GTCCAAGAGAAGAATCGAGAAAGAGGCAGCGAGGTAGGAGCGGGAAGAAGATGGATCCGG AGCAGATAGGGAGGGCGTTTGTGGATCACTATTACTCCATCTTTGACACCAACCGGCCGG GCCTGGTGTCTCTCTACCAGGATGGGTCCATGCTTACGTTCGAGGGCCAGAAGCTCGCGG GCGCGCAGGCCATCGTGAGCAAGCTCACAAGCCTCGCCTTCCAGCAGTGTAAGCACAATG TTTCAACAGTAGACTGCCAGCTTTCTGGCCCAGGTGGTGGTATGCTCGTCTTTGTCAACG GCAACATGCAGCTTCCTGGCGAGGAGCACGCTCTCAAGTTCAGTCAGATGTTTCATTTGC TACCGAATGGAGCAGGAAGCTTTTATGTTCACAATGATATCTTCCGATTGAACTATTCGT AGAACAGGGTTTCACATTGAGCCTTAGTTCTGAACCTGTATGGCTTGTGGTGGTGGTGGT TTTGATGATGATAGCCTTTTTTGTTGGCGCATCCTGCAGTCACTGCATTGTAGAAAAAAT TCCCATTTGAGGCCTTTTCCGTGTCTCAGTTGTGTTCTGTTGTGAACTTTAGCAAGATGT GATTTTGGAATATTATGTTTGATTATACAATCAAACGTACCTAAAAAATTCTGGTTAGAT GAAAAGTTTAAGCTATATTCTGAAATCTGGAAACTCCTGGGGGGCCTTATTGGGATGGGA AAAGGAGGGGTTGCTTCCTTTTTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAGAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9C7F5 |
Definition |
sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana |
Align length |
124 |
Score (bit) |
197.0 |
E-value |
5.0e-50 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A1YN06 |
Definition |
tr|A1YN06|A1YN06_BRACM Putative nuclear transport factor 2 OS=Brassica campestris |
Align length |
123 |
Score (bit) |
199.0 |
E-value |
2.0e-49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955626|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_J18, 5' (749 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A1YN06|A1YN06_BRACM Putative nuclear transport factor 2 OS=Br... 199 2e-49 tr|Q8LC75|Q8LC75_ARATH Nuclear transport factor 2, putative OS=A... 197 8e-49 tr|Q9FZK4|Q9FZK4_ARATH F17L21.10 (Similar to nuclear transport f... 196 1e-48 tr|B8LN19|B8LN19_PICSI Putative uncharacterized protein OS=Picea... 196 1e-48 tr|A9PBT2|A9PBT2_POPTR Putative uncharacterized protein OS=Popul... 195 3e-48 tr|A9PDH2|A9PDH2_POPTR Putative uncharacterized protein OS=Popul... 192 2e-47 tr|B3TLR5|B3TLR5_ELAGV Nuclear transport factor 2 OS=Elaeis guin... 190 1e-46 tr|A9SU69|A9SU69_PHYPA Predicted protein OS=Physcomitrella paten... 189 1e-46 tr|A8MS55|A8MS55_ARATH Uncharacterized protein At1g27970.2 OS=Ar... 188 3e-46 tr|A5BM29|A5BM29_VITVI Putative uncharacterized protein (Chromos... 188 4e-46 tr|B7FLL8|B7FLL8_MEDTR Putative uncharacterized protein OS=Medic... 183 9e-45 tr|A5YU15|A5YU15_PANGI Nuclear transport factor 2 OS=Panax ginse... 183 1e-44 tr|A9SG98|A9SG98_PHYPA Predicted protein OS=Physcomitrella paten... 178 3e-43 tr|A9RIC1|A9RIC1_PHYPA Predicted protein OS=Physcomitrella paten... 176 2e-42 tr|A9NQ74|A9NQ74_PICSI Putative uncharacterized protein OS=Picea... 174 4e-42 tr|A9PE14|A9PE14_POPTR Putative uncharacterized protein OS=Popul... 173 1e-41 tr|Q0J463|Q0J463_ORYSJ Os08g0532300 protein OS=Oryza sativa subs... 171 6e-41 tr|A2YXF8|A2YXF8_ORYSI Putative uncharacterized protein OS=Oryza... 171 6e-41 tr|B8LRR1|B8LRR1_PICSI Putative uncharacterized protein OS=Picea... 166 1e-39 tr|B4FC92|B4FC92_MAIZE Nuclear transport factor 2 OS=Zea mays PE... 164 6e-39 tr|A7QUM6|A7QUM6_VITVI Chromosome chr10 scaffold_179, whole geno... 153 1e-35 tr|Q8RU32|Q8RU32_ORYSJ Putative nuclear transport factor Ntf2p (... 146 1e-33 tr|B8AAH3|B8AAH3_ORYSI Putative uncharacterized protein OS=Oryza... 146 1e-33 tr|Q9LPY0|Q9LPY0_ARATH T23J18.22 OS=Arabidopsis thaliana PE=4 SV=1 134 5e-30 tr|A8I6D1|A8I6D1_CHLRE Predicted protein OS=Chlamydomonas reinha... 131 4e-29 tr|A7TP32|A7TP32_VANPO Putative uncharacterized protein OS=Vande... 124 9e-27 tr|B6T7R2|B6T7R2_MAIZE Nuclear transport factor 2 OS=Zea mays PE... 120 1e-25 tr|B8M4I2|B8M4I2_9EURO Nuclear transport factor NTF-2, putative ... 120 1e-25 tr|B6Q1C8|B6Q1C8_PENMA Nuclear transport factor NTF-2, putative ... 120 1e-25 tr|B3LS21|B3LS21_YEAS1 Nuclear transport factor OS=Saccharomyces... 119 3e-25
>tr|A1YN06|A1YN06_BRACM Putative nuclear transport factor 2 OS=Brassica campestris PE=2 SV=1 Length = 123
Score = 199 bits (505), Expect = 2e-49 Identities = 92/123 (74%), Positives = 104/123 (84%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV+HYYS FDTNR GL YQ+ SMLTFEGQK+ G Q+IV+KLTSL FQQC Sbjct: 1 MDPDAVAKAFVEHYYSTFDTNRAGLAGFYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KHN+STVDCQ SGP GMLVFV+GN+QL GEEHALKFSQMFHL+P GSFYV NDIFRL Sbjct: 61 KHNISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 120
Query: 411 NYS 419 NYS Sbjct: 121 NYS 123
>tr|Q8LC75|Q8LC75_ARATH Nuclear transport factor 2, putative OS=Arabidopsis thaliana PE=2 SV=1 Length = 123
Score = 197 bits (500), Expect = 8e-49 Identities = 91/123 (73%), Positives = 105/123 (85%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV+HYYS FDTNR GL LYQ+ SMLTFEGQK+ G Q+IV+KLTSL FQQC Sbjct: 1 MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KH++STVDCQ SGP GMLVFV+GN+QL GEEHALKFSQMFHL+P GSFYV NDIFRL Sbjct: 61 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
>tr|Q9FZK4|Q9FZK4_ARATH F17L21.10 (Similar to nuclear transport factor 2) OS=Arabidopsis thaliana GN=At1g27310/F17L21.10 PE=2 SV=1 Length = 122
Score = 196 bits (499), Expect = 1e-48 Identities = 91/123 (73%), Positives = 108/123 (87%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV+HYYS FD NRPGLVSLYQ+GSMLTFEGQK+ G+Q IV+KLT L FQQC Sbjct: 1 MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KHN++TVDCQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+ N G++YV NDIFRL Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISN-QGNYYVFNDIFRL 119
Query: 411 NYS 419 NY+ Sbjct: 120 NYA 122
>tr|B8LN19|B8LN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 123
Score = 196 bits (498), Expect = 1e-48 Identities = 88/123 (71%), Positives = 106/123 (86%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV HYY++FD+NR L LYQ+GSMLTFEG+K+ G Q+IV KLTSL FQQC Sbjct: 1 MDPDAVAKAFVGHYYNLFDSNRANLAGLYQEGSMLTFEGEKIQGVQSIVGKLTSLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KHN+STVDCQ SGP GGMLVFV+G++QLPGE+H LKFSQMFHL+P AGS+YV NDIFRL Sbjct: 61 KHNISTVDCQPSGPAGGMLVFVSGSLQLPGEQHQLKFSQMFHLMPTPAGSYYVFNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
>tr|A9PBT2|A9PBT2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 123
Score = 195 bits (495), Expect = 3e-48 Identities = 90/123 (73%), Positives = 105/123 (85%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+Q+ +AFV+HYYS FD NR GL +LYQDGSMLTFEGQK G+Q IV+KL +L FQQC Sbjct: 1 MDPDQVAKAFVEHYYSTFDANRAGLANLYQDGSMLTFEGQKTQGSQNIVAKLIALPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KH ++TVDCQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+P GSFYV NDIFRL Sbjct: 61 KHLITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVFNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
>tr|A9PDH2|A9PDH2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 123
Score = 192 bits (488), Expect = 2e-47 Identities = 86/123 (69%), Positives = 107/123 (86%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV+HYY++FD+NR GL +LYQD SMLTFEGQK G+Q IV+KLT+L F QC Sbjct: 1 MDPDTVAKAFVEHYYNMFDSNRAGLANLYQDASMLTFEGQKTQGSQNIVAKLTALPFHQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KH+++TVDCQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+P GS+YV+NDIFRL Sbjct: 61 KHHITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSYYVYNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
>tr|B3TLR5|B3TLR5_ELAGV Nuclear transport factor 2 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 123
Score = 190 bits (482), Expect = 1e-46 Identities = 89/123 (72%), Positives = 104/123 (84%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV+HYY FDTNR GL SLYQ+GSMLTFEG K GAQAIV+KL SL FQQC Sbjct: 1 MDPDALAKAFVEHYYRTFDTNRAGLGSLYQEGSMLTFEGAKTQGAQAIVAKLISLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 +H +STVDCQ SGP GGMLVFV+G++QL GE+H+LKFSQMFHL+P GSFYV NDIFRL Sbjct: 61 QHQISTVDCQPSGPAGGMLVFVSGSLQLAGEQHSLKFSQMFHLMPTPQGSFYVLNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
>tr|A9SU69|A9SU69_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_235062 PE=4 SV=1 Length = 123
Score = 189 bits (481), Expect = 1e-46 Identities = 87/123 (70%), Positives = 104/123 (84%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+Q+ + FV+HYY+ FDTNR L++LYQ+GSMLTFEG+K+ GAQ+I +KL SL FQQC Sbjct: 1 MDPDQLSKHFVEHYYTTFDTNRLALINLYQEGSMLTFEGEKIQGAQSISNKLNSLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 KHN+STVDCQ SG GG +VFV+GN+QLPGEEH LKFSQMFHL P GSFYV NDIFRL Sbjct: 61 KHNISTVDCQPSGLSGGWVVFVSGNLQLPGEEHLLKFSQMFHLAPTPQGSFYVFNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
>tr|A8MS55|A8MS55_ARATH Uncharacterized protein At1g27970.2 OS=Arabidopsis thaliana GN=At1g27970 PE=4 SV=1 Length = 134
Score = 188 bits (478), Expect = 3e-46 Identities = 87/119 (73%), Positives = 101/119 (84%) Frame = +3
Query: 48 KMDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQ 227 +MDP+ + +AFV+HYYS FDTNR GL LYQ+ SMLTFEGQK+ G Q+IV+KLTSL FQQ Sbjct: 3 QMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQ 62
Query: 228 CKHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIF 404 CKH++STVDCQ SGP GMLVFV+GN+QL GEEHALKFSQMFHL+P GSFYV NDIF Sbjct: 63 CKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121
>tr|A5BM29|A5BM29_VITVI Putative uncharacterized protein (Chromosome chr1 scaffold_136, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00002791001 PE=4 SV=1 Length = 123
Score = 188 bits (477), Expect = 4e-46 Identities = 86/123 (69%), Positives = 104/123 (84%) Frame = +3
Query: 51 MDPEQIGRAFVDHYYSIFDTNRPGLVSLYQDGSMLTFEGQKLAGAQAIVSKLTSLAFQQC 230 MDP+ + +AFV+HYYS FD NR L +LYQ+ SMLTFEGQK+ G+ IV+KLTSL FQQC Sbjct: 1 MDPDAVAKAFVEHYYSTFDANRANLANLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60
Query: 231 KHNVSTVDCQLSGPGGGMLVFVNGNMQLPGEEHALKFSQMFHLLPNGAGSFYVHNDIFRL 410 +H+++TVDCQ SGP GGMLVFV+GN+QL GE+HALKFSQMFHL+P GSFYV NDIFRL Sbjct: 61 QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
Query: 411 NYS 419 NY+ Sbjct: 121 NYA 123
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