DK955635
Clone id TST39A01NGRL0023_K03
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_K03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTTAAACTTCAGGCGATGGGCGGGGAAAGGTGAAGGGGTGTGTTGAACCCTATTCCGCGC
GATCTGCAGAGAAGTACAACAGTAACCCTTCTGTATCGACCAACATCAAAGCAGGAACCA
GGCACAGCAGGGTATGGAAGATAAGAAGAAGACATTGCCTGAGAAAGTTCACGATCTATA
TTTCAAGGTCTTTCCGGGCGCAGATTGCCCCGTAACTGGTGCTGCGAGAGAGAAGCTCAT
CACTGCATCCCGCTCGTGCTCGCAGGGGCAGCAAAGTGAGCAAGAACCATCTGCTTCTTG
CAGCTCTGCTGCTTCGTCTCCTCAGCCCGAGTCCAAATACAAGCACCCTCATGTTTATGA
TGTCTATGGCCGGCGTATAGATCAACAAAACTTGCAAGGGGAGAAAGCAGAGGTGTGGAG
AATGCCCTCCTTCTTGTACACCTCATCATTCTATAATCCTCAGCAAGATGCCAGGCCTGG
AGGATCCTTTGAAGAAATCAACCCTGCCAATCGCATGCCTGTGCATGCAAATCAAGTCCC
TGCACCTGGACAGAAAGAACCATTGTCTACTCTGCGACAGAAAATCGACTATCCCAAAAG
GTGGTACTGAGGACACATGGGTA
■■Homology search results ■■ -
sp_hit_id P53703
Definition sp|P53703|CCHL_CAEEL Probable cytochrome c-type heme lyase OS=Caenorhabditis elegans
Align length 40
Score (bit) 33.9
E-value 0.008
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955635|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_K03, 5'
(623 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P53703|CCHL_CAEEL Probable cytochrome c-type heme lyase OS=Ca... 34 0.008
sp|Q5F339|CCHL_CHICK Cytochrome c-type heme lyase OS=Gallus gall... 36 0.18
sp|A5PJG7|CCHL_BOVIN Cytochrome c-type heme lyase OS=Bos taurus ... 36 0.18
sp|Q8IUN9|CLC10_HUMAN C-type lectin domain family 10 member A OS... 33 1.2
sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN... 33 1.5
sp|P53701|CCHL_HUMAN Cytochrome c-type heme lyase OS=Homo sapien... 33 1.5
sp|P30205|WC11_BOVIN Antigen WC1.1 OS=Bos taurus PE=2 SV=1 32 2.0
sp|Q86HW6|Y6461_DICDI Probable serine/threonine-protein kinase D... 32 2.6
sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcriptio... 32 3.4
sp|Q552W5|CCHL_DICDI Probable cytochrome c-type heme lyase OS=Di... 32 3.4
sp|Q96DD7|SHSA4_HUMAN Protein shisa-4 OS=Homo sapiens GN=SHISA4 ... 31 5.9
sp|Q8BX02|KANK2_MOUSE KN motif and ankyrin repeat domain-contain... 31 5.9
sp|A1WHD1|RS3_VEREI 30S ribosomal protein S3 OS=Verminephrobacte... 30 7.7
sp|A3MSM9|PDXT_PYRCJ Glutamine amidotransferase subunit pdxT OS=... 30 7.7
sp|Q1LZH7|KANK2_BOVIN KN motif and ankyrin repeat domain-contain... 30 7.7
sp|P53702|CCHL_MOUSE Cytochrome c-type heme lyase OS=Mus musculu... 30 7.7

>sp|P53703|CCHL_CAEEL Probable cytochrome c-type heme lyase
OS=Caenorhabditis elegans GN=cchl-1 PE=2 SV=1
Length = 280

Score = 33.9 bits (76), Expect(2) = 0.008
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = +2

Query: 479 GGSFEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
G INP N H NQ PAP Q L T R+K PK
Sbjct: 60 GADKASINPLNNELEHPNQKPAPDQPFALPTKREKSTIPK 99



Score = 24.6 bits (52), Expect(2) = 0.008
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Frame = +3

Query: 582 KSTIPKGGTE-DTW 620
KSTIPK GTE +TW
Sbjct: 94 KSTIPKAGTETETW 107


>sp|Q5F339|CCHL_CHICK Cytochrome c-type heme lyase OS=Gallus gallus
GN=HCCS PE=2 SV=1
Length = 273

Score = 35.8 bits (81), Expect = 0.18
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +2

Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
++I+P+N MP NQ+P+P Q PLST+R++ P+
Sbjct: 82 DDIDPSNMMPP-PNQLPSPDQPFPLSTVREESSIPR 116


>sp|A5PJG7|CCHL_BOVIN Cytochrome c-type heme lyase OS=Bos taurus
GN=HCCS PE=2 SV=1
Length = 275

Score = 35.8 bits (81), Expect = 0.18
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2

Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
E ++P+N MP NQ PAP Q PLST+R++ P+
Sbjct: 84 ENLDPSNLMPP-PNQTPAPDQPFPLSTVREESSIPR 118


>sp|Q8IUN9|CLC10_HUMAN C-type lectin domain family 10 member A
OS=Homo sapiens GN=CLEC10A PE=2 SV=1
Length = 316

Score = 33.1 bits (74), Expect = 1.2
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3

Query: 390 TCKGRKQRCGECPPSCTPHHSIILSKMPGLEDPLKKSTLPIACL 521
T K C CP C P HS +L ++ L LKK T +A L
Sbjct: 127 TQKAHLGHCPHCPSVCVPVHSEMLLRVQQLVQDLKKLTCQVATL 170


>sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN=VWF
PE=1 SV=2
Length = 2813

Score = 32.7 bits (73), Expect = 1.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3

Query: 384 NKTCKGRKQRCG-ECPPSCTPHHSIILSK 467
N TC RK C E PPSC PH ++ L K
Sbjct: 2357 NFTCACRKDECRRESPPSCPPHRTLALRK 2385


>sp|P53701|CCHL_HUMAN Cytochrome c-type heme lyase OS=Homo sapiens
GN=HCCS PE=1 SV=1
Length = 268

Score = 32.7 bits (73), Expect = 1.5
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2

Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
E ++P+N MP NQ PAP Q LST+R++ P+
Sbjct: 77 ENLDPSNLMPP-PNQTPAPDQPFALSTVREESSIPR 111


>sp|P30205|WC11_BOVIN Antigen WC1.1 OS=Bos taurus PE=2 SV=1
Length = 1436

Score = 32.3 bits (72), Expect = 2.0
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2

Query: 377 IDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDA 472
+D+ N +GE+++VWR PS+ + N Q+DA
Sbjct: 650 LDEVNCRGEESQVWRCPSWGWRQHNCNHQEDA 681


>sp|Q86HW6|Y6461_DICDI Probable serine/threonine-protein kinase
DDB_G0276461 OS=Dictyostelium discoideum GN=DDB_G0276461
PE=3 SV=1
Length = 798

Score = 32.0 bits (71), Expect = 2.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2

Query: 338 YKHPHVYDVY-GRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514
Y+ P + D+Y G+ ID EK +VW + L+ +FY D GGS + IN +
Sbjct: 234 YRAPEMVDLYRGQIID------EKVDVWALGCLLFKMAFY---VDPFDGGSLQIINNNYK 284

Query: 515 MP 520
+P
Sbjct: 285 IP 286


>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription
subunit 12 OS=Drosophila melanogaster GN=kto PE=1 SV=2
Length = 2531

Score = 31.6 bits (70), Expect = 3.4
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +2

Query: 347 PHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANRMPVH 526
PH ++ RI++ L + + L + Q PGG F NP + P
Sbjct: 2093 PHQQNMQSNRIERPPLNANSKQA--LSQMLRQRQPFQQQAQQGPGGGF---NPMQQQPQA 2147

Query: 527 ANQVPAPGQKEPLSTLRQKIDYPKR 601
+ Q P P Q+ + +RQ+ P++
Sbjct: 2148 SQQQPGPQQQMNPNQMRQQQMNPQQ 2172


>sp|Q552W5|CCHL_DICDI Probable cytochrome c-type heme lyase
OS=Dictyostelium discoideum GN=cchl PE=3 SV=1
Length = 211

Score = 31.6 bits (70), Expect = 3.4
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2

Query: 440 TSSFYNPQQDARPGGS--FEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
TS + DA GG +INPAN M NQ P P Q +PLST R P+
Sbjct: 9 TSITKSSPTDAMGGGCPIAHDINPANHM-YKPNQNPHPDQTKPLSTERITSTIPR 62


tr_hit_id A8J5H6
Definition tr|A8J5H6|A8J5H6_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 88
Score (bit) 56.2
E-value 5.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955635|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_K03, 5'
(623 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8J5H6|A8J5H6_CHLRE Predicted protein OS=Chlamydomonas reinha... 56 5e-09
tr|A8J5J2|A8J5J2_CHLRE Cytochrome c heme lyase OS=Chlamydomonas ... 56 5e-09
tr|A8WT56|A8WT56_CAEBR CBR-CCHL-1 protein OS=Caenorhabditis brig... 34 0.010
tr|B7G6M9|B7G6M9_PHATR Predicted protein (Fragment) OS=Phaeodact... 37 0.021
tr|A7RTZ6|A7RTZ6_NEMVE Predicted protein OS=Nematostella vectens... 33 0.099
tr|Q4RZJ2|Q4RZJ2_TETNG Chromosome undetermined SCAF14815, whole ... 37 0.17
tr|Q7QFU4|Q7QFU4_ANOGA AGAP003843-PA OS=Anopheles gambiae GN=AGA... 39 0.25
tr|Q803H2|Q803H2_DANRE Holocytochrome c synthase OS=Danio rerio ... 33 0.59
tr|Q4P9Y2|Q4P9Y2_USTMA Putative uncharacterized protein OS=Ustil... 37 0.73
tr|Q6DGN8|Q6DGN8_DANRE Holocytochrome c synthetase a OS=Danio re... 32 0.76
tr|Q6DCG6|Q6DCG6_XENLA Hccs-prov protein OS=Xenopus laevis GN=hc... 33 0.76
tr|B7PEK0|B7PEK0_IXOSC Holocytochrome C synthase/heme-lyase, put... 37 1.2
tr|A8NQI1|A8NQI1_BRUMA Cytochrome C-type heme lyase, putative OS... 37 1.2
tr|B8MDW9|B8MDW9_9EURO Nonribosomal peptide synthase, putative O... 36 1.6
tr|B5X177|B5X177_SALSA Cytochrome c-type heme lyase OS=Salmo sal... 36 2.1
tr|B4K6L0|B4K6L0_DROMO GI22295 OS=Drosophila mojavensis GN=GI222... 35 3.6
tr|B4JRL5|B4JRL5_DROGR GH19837 OS=Drosophila grimshawi GN=GH1983... 35 3.6
tr|B3LVL0|B3LVL0_DROAN GF16950 OS=Drosophila ananassae GN=GF1695... 35 3.6
tr|Q1DN98|Q1DN98_COCIM Putative uncharacterized protein OS=Cocci... 35 3.6
tr|B2KYH1|B2KYH1_9PROC TruF2 OS=uncultured Prochloron sp. 06037A... 35 4.7
tr|Q4PEE4|Q4PEE4_USTMA Putative uncharacterized protein OS=Ustil... 35 4.7
tr|Q00TD2|Q00TD2_OSTTA Holocytochrome c synthase/heme-lyase (ISS... 34 6.2
tr|B8NL21|B8NL21_ASPFL Protein RDR1, putative OS=Aspergillus fla... 34 6.2
tr|B4M0N3|B4M0N3_DROVI GJ24087 OS=Drosophila virilis GN=GJ24087 ... 34 8.0
tr|Q2U5H9|Q2U5H9_ASPOR Predicted protein OS=Aspergillus oryzae G... 34 8.0

>tr|A8J5H6|A8J5H6_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_192603 PE=4 SV=1
Length = 322

Score = 56.2 bits (134), Expect(2) = 5e-09
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +2

Query: 335 KYKHPHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514
KYK+P VY+VYG+RI+ N Q + P A G+ + ++P N
Sbjct: 209 KYKNPAVYNVYGQRINDPNSQAK------------------PSPLASITGA-DVLDPKNN 249

Query: 515 MPVHANQVPAPGQKEPLSTLRQKIDYPK 598
MP+ NQ+P PGQ++PLST R + PK
Sbjct: 250 MPLEPNQLPCPGQRKPLSTERVASNIPK 277



Score = 27.3 bits (59), Expect(2) = 5e-09
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3

Query: 585 STIPKGGTEDTWV 623
S IPKGGTE TW+
Sbjct: 273 SNIPKGGTESTWL 285


>tr|A8J5J2|A8J5J2_CHLRE Cytochrome c heme lyase OS=Chlamydomonas
reinhardtii GN=HCS1 PE=4 SV=1
Length = 292

Score = 56.2 bits (134), Expect(2) = 5e-09
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +2

Query: 335 KYKHPHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514
KYK+P VY+VYG+RI+ N Q + P A G+ + ++P N
Sbjct: 39 KYKNPAVYNVYGQRINDPNSQAK------------------PSPLASITGA-DVLDPKNN 79

Query: 515 MPVHANQVPAPGQKEPLSTLRQKIDYPK 598
MP+ NQ+P PGQ++PLST R + PK
Sbjct: 80 MPLEPNQLPCPGQRKPLSTERVASNIPK 107



Score = 27.3 bits (59), Expect(2) = 5e-09
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3

Query: 585 STIPKGGTEDTWV 623
S IPKGGTE TW+
Sbjct: 103 SNIPKGGTESTWL 115


>tr|A8WT56|A8WT56_CAEBR CBR-CCHL-1 protein OS=Caenorhabditis
briggsae GN=Cbr-cchl-1 PE=4 SV=1
Length = 281

Score = 34.3 bits (77), Expect(2) = 0.010
Identities = 18/34 (52%), Positives = 18/34 (52%)
Frame = +2

Query: 497 INPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
INP N H NQ PAP Q PL T R K PK
Sbjct: 67 INPLNNELEHPNQKPAPDQPFPLPTNRVKSTIPK 100



Score = 27.7 bits (60), Expect(2) = 0.010
Identities = 13/15 (86%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Frame = +3

Query: 582 KSTIPKGGTE-DTWV 623
KSTIPK GTE DTWV
Sbjct: 95 KSTIPKAGTEKDTWV 109


>tr|B7G6M9|B7G6M9_PHATR Predicted protein (Fragment)
OS=Phaeodactylum tricornutum CCAP 1055/1
GN=PHATRDRAFT_6437 PE=4 SV=1
Length = 212

Score = 37.4 bits (85), Expect(2) = 0.021
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2

Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
+ I+P N MP ANQ+PAPGQ + L T R PK
Sbjct: 14 QPIDPKNNMPKIANQLPAPGQSKELPTERVHSTIPK 49



Score = 23.5 bits (49), Expect(2) = 0.021
Identities = 10/13 (76%), Positives = 12/13 (92%), Gaps = 1/13 (7%)
Frame = +3

Query: 585 STIPKGGTED-TW 620
STIPKGGT++ TW
Sbjct: 45 STIPKGGTDNSTW 57


>tr|A7RTZ6|A7RTZ6_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g228742 PE=4 SV=1
Length = 241

Score = 33.1 bits (74), Expect(2) = 0.099
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2

Query: 497 INPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
++P N MP ANQ P+PGQ PLST R PK
Sbjct: 33 LDPTNMMPP-ANQQPSPGQPFPLSTDRVVSSIPK 65



Score = 25.4 bits (54), Expect(2) = 0.099
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3

Query: 585 STIPKGGTEDTWV 623
S+IPKGG+ D WV
Sbjct: 61 SSIPKGGSNDKWV 73


>tr|Q4RZJ2|Q4RZJ2_TETNG Chromosome undetermined SCAF14815, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00026456001 PE=4 SV=1
Length = 221

Score = 37.4 bits (85), Expect(2) = 0.17
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +2

Query: 458 PQQDARPGGSFEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
P + AR G S +++P N MP NQVPAP Q PLS +R++ P+
Sbjct: 21 PMKAARRGQS--DVDPTNMMPP-PNQVPAPDQPFPLSVVREESTIPR 64



Score = 20.4 bits (41), Expect(2) = 0.17
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3

Query: 582 KSTIPKGGTEDTWV 623
+STIP+ E+ WV
Sbjct: 59 ESTIPRFNNENNWV 72


>tr|Q7QFU4|Q7QFU4_ANOGA AGAP003843-PA OS=Anopheles gambiae
GN=AGAP003843 PE=4 SV=2
Length = 278

Score = 38.9 bits (89), Expect = 0.25
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = +2

Query: 494 EINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
E+NP N MP ANQ PAPGQ PL T RQ PK
Sbjct: 75 EVNPLNMMPP-ANQNPAPGQPFPLPTERQVSSIPK 108


>tr|Q803H2|Q803H2_DANRE Holocytochrome c synthase OS=Danio rerio
GN=hccs PE=2 SV=1
Length = 269

Score = 32.7 bits (73), Expect(2) = 0.59
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2

Query: 497 INPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
I+P N MP NQVPAP Q PLS R++ P+
Sbjct: 80 IDPTNMMPP-PNQVPAPDQPFPLSVKREESKIPR 112



Score = 23.1 bits (48), Expect(2) = 0.59
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3

Query: 582 KSTIPKGGTEDTWV 623
+S IP+ GTE WV
Sbjct: 107 ESKIPRSGTEQNWV 120


>tr|Q4P9Y2|Q4P9Y2_USTMA Putative uncharacterized protein OS=Ustilago
maydis GN=UM03081.1 PE=4 SV=1
Length = 1348

Score = 37.4 bits (85), Expect = 0.73
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2

Query: 335 KYKHPHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514
+Y+ P + DVY RR+ EKA++W + LY +Y + GG +N R
Sbjct: 301 QYRAPEMVDVYQRRVID-----EKADIWALGVLLYKLCYYTTPFEENGGGPLAILNVQYR 355

Query: 515 MP 520
+P
Sbjct: 356 IP 357


>tr|Q6DGN8|Q6DGN8_DANRE Holocytochrome c synthetase a OS=Danio rerio
GN=hccsa PE=2 SV=1
Length = 276

Score = 32.0 bits (71), Expect(2) = 0.76
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2

Query: 485 SFEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598
+ +INPAN MP NQ P+ Q PLS +R++ P+
Sbjct: 85 TLSDINPANMMP-PPNQQPSADQPFPLSVVREESTIPR 121



Score = 23.5 bits (49), Expect(2) = 0.76
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3

Query: 582 KSTIPKGGTEDTWV 623
+STIP+ G E WV
Sbjct: 116 ESTIPRAGAEQNWV 129