DK955635 |
Clone id |
TST39A01NGRL0023_K03 |
Library |
TST39 |
Length |
623 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_K03. 5' end sequence. |
Accession |
DK955635 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2553Contig1 |
Sequence |
GTTAAACTTCAGGCGATGGGCGGGGAAAGGTGAAGGGGTGTGTTGAACCCTATTCCGCGC GATCTGCAGAGAAGTACAACAGTAACCCTTCTGTATCGACCAACATCAAAGCAGGAACCA GGCACAGCAGGGTATGGAAGATAAGAAGAAGACATTGCCTGAGAAAGTTCACGATCTATA TTTCAAGGTCTTTCCGGGCGCAGATTGCCCCGTAACTGGTGCTGCGAGAGAGAAGCTCAT CACTGCATCCCGCTCGTGCTCGCAGGGGCAGCAAAGTGAGCAAGAACCATCTGCTTCTTG CAGCTCTGCTGCTTCGTCTCCTCAGCCCGAGTCCAAATACAAGCACCCTCATGTTTATGA TGTCTATGGCCGGCGTATAGATCAACAAAACTTGCAAGGGGAGAAAGCAGAGGTGTGGAG AATGCCCTCCTTCTTGTACACCTCATCATTCTATAATCCTCAGCAAGATGCCAGGCCTGG AGGATCCTTTGAAGAAATCAACCCTGCCAATCGCATGCCTGTGCATGCAAATCAAGTCCC TGCACCTGGACAGAAAGAACCATTGTCTACTCTGCGACAGAAAATCGACTATCCCAAAAG GTGGTACTGAGGACACATGGGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P53703 |
Definition |
sp|P53703|CCHL_CAEEL Probable cytochrome c-type heme lyase OS=Caenorhabditis elegans |
Align length |
40 |
Score (bit) |
33.9 |
E-value |
0.008 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955635|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_K03, 5' (623 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P53703|CCHL_CAEEL Probable cytochrome c-type heme lyase OS=Ca... 34 0.008 sp|Q5F339|CCHL_CHICK Cytochrome c-type heme lyase OS=Gallus gall... 36 0.18 sp|A5PJG7|CCHL_BOVIN Cytochrome c-type heme lyase OS=Bos taurus ... 36 0.18 sp|Q8IUN9|CLC10_HUMAN C-type lectin domain family 10 member A OS... 33 1.2 sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN... 33 1.5 sp|P53701|CCHL_HUMAN Cytochrome c-type heme lyase OS=Homo sapien... 33 1.5 sp|P30205|WC11_BOVIN Antigen WC1.1 OS=Bos taurus PE=2 SV=1 32 2.0 sp|Q86HW6|Y6461_DICDI Probable serine/threonine-protein kinase D... 32 2.6 sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcriptio... 32 3.4 sp|Q552W5|CCHL_DICDI Probable cytochrome c-type heme lyase OS=Di... 32 3.4 sp|Q96DD7|SHSA4_HUMAN Protein shisa-4 OS=Homo sapiens GN=SHISA4 ... 31 5.9 sp|Q8BX02|KANK2_MOUSE KN motif and ankyrin repeat domain-contain... 31 5.9 sp|A1WHD1|RS3_VEREI 30S ribosomal protein S3 OS=Verminephrobacte... 30 7.7 sp|A3MSM9|PDXT_PYRCJ Glutamine amidotransferase subunit pdxT OS=... 30 7.7 sp|Q1LZH7|KANK2_BOVIN KN motif and ankyrin repeat domain-contain... 30 7.7 sp|P53702|CCHL_MOUSE Cytochrome c-type heme lyase OS=Mus musculu... 30 7.7
>sp|P53703|CCHL_CAEEL Probable cytochrome c-type heme lyase OS=Caenorhabditis elegans GN=cchl-1 PE=2 SV=1 Length = 280
Score = 33.9 bits (76), Expect(2) = 0.008 Identities = 18/40 (45%), Positives = 19/40 (47%) Frame = +2
Query: 479 GGSFEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 G INP N H NQ PAP Q L T R+K PK Sbjct: 60 GADKASINPLNNELEHPNQKPAPDQPFALPTKREKSTIPK 99
Score = 24.6 bits (52), Expect(2) = 0.008 Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%) Frame = +3
Query: 582 KSTIPKGGTE-DTW 620 KSTIPK GTE +TW Sbjct: 94 KSTIPKAGTETETW 107
>sp|Q5F339|CCHL_CHICK Cytochrome c-type heme lyase OS=Gallus gallus GN=HCCS PE=2 SV=1 Length = 273
Score = 35.8 bits (81), Expect = 0.18 Identities = 16/36 (44%), Positives = 26/36 (72%) Frame = +2
Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 ++I+P+N MP NQ+P+P Q PLST+R++ P+ Sbjct: 82 DDIDPSNMMPP-PNQLPSPDQPFPLSTVREESSIPR 116
>sp|A5PJG7|CCHL_BOVIN Cytochrome c-type heme lyase OS=Bos taurus GN=HCCS PE=2 SV=1 Length = 275
Score = 35.8 bits (81), Expect = 0.18 Identities = 17/36 (47%), Positives = 24/36 (66%) Frame = +2
Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 E ++P+N MP NQ PAP Q PLST+R++ P+ Sbjct: 84 ENLDPSNLMPP-PNQTPAPDQPFPLSTVREESSIPR 118
>sp|Q8IUN9|CLC10_HUMAN C-type lectin domain family 10 member A OS=Homo sapiens GN=CLEC10A PE=2 SV=1 Length = 316
Score = 33.1 bits (74), Expect = 1.2 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +3
Query: 390 TCKGRKQRCGECPPSCTPHHSIILSKMPGLEDPLKKSTLPIACL 521 T K C CP C P HS +L ++ L LKK T +A L Sbjct: 127 TQKAHLGHCPHCPSVCVPVHSEMLLRVQQLVQDLKKLTCQVATL 170
>sp|Q28295|VWF_CANFA von Willebrand factor OS=Canis familiaris GN=VWF PE=1 SV=2 Length = 2813
Score = 32.7 bits (73), Expect = 1.5 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +3
Query: 384 NKTCKGRKQRCG-ECPPSCTPHHSIILSK 467 N TC RK C E PPSC PH ++ L K Sbjct: 2357 NFTCACRKDECRRESPPSCPPHRTLALRK 2385
>sp|P53701|CCHL_HUMAN Cytochrome c-type heme lyase OS=Homo sapiens GN=HCCS PE=1 SV=1 Length = 268
Score = 32.7 bits (73), Expect = 1.5 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +2
Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 E ++P+N MP NQ PAP Q LST+R++ P+ Sbjct: 77 ENLDPSNLMPP-PNQTPAPDQPFALSTVREESSIPR 111
>sp|P30205|WC11_BOVIN Antigen WC1.1 OS=Bos taurus PE=2 SV=1 Length = 1436
Score = 32.3 bits (72), Expect = 2.0 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +2
Query: 377 IDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDA 472 +D+ N +GE+++VWR PS+ + N Q+DA Sbjct: 650 LDEVNCRGEESQVWRCPSWGWRQHNCNHQEDA 681
>sp|Q86HW6|Y6461_DICDI Probable serine/threonine-protein kinase DDB_G0276461 OS=Dictyostelium discoideum GN=DDB_G0276461 PE=3 SV=1 Length = 798
Score = 32.0 bits (71), Expect = 2.6 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +2
Query: 338 YKHPHVYDVY-GRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514 Y+ P + D+Y G+ ID EK +VW + L+ +FY D GGS + IN + Sbjct: 234 YRAPEMVDLYRGQIID------EKVDVWALGCLLFKMAFY---VDPFDGGSLQIINNNYK 284
Query: 515 MP 520 +P Sbjct: 285 IP 286
>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12 OS=Drosophila melanogaster GN=kto PE=1 SV=2 Length = 2531
Score = 31.6 bits (70), Expect = 3.4 Identities = 21/85 (24%), Positives = 36/85 (42%) Frame = +2
Query: 347 PHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANRMPVH 526 PH ++ RI++ L + + L + Q PGG F NP + P Sbjct: 2093 PHQQNMQSNRIERPPLNANSKQA--LSQMLRQRQPFQQQAQQGPGGGF---NPMQQQPQA 2147
Query: 527 ANQVPAPGQKEPLSTLRQKIDYPKR 601 + Q P P Q+ + +RQ+ P++ Sbjct: 2148 SQQQPGPQQQMNPNQMRQQQMNPQQ 2172
>sp|Q552W5|CCHL_DICDI Probable cytochrome c-type heme lyase OS=Dictyostelium discoideum GN=cchl PE=3 SV=1 Length = 211
Score = 31.6 bits (70), Expect = 3.4 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +2
Query: 440 TSSFYNPQQDARPGGS--FEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 TS + DA GG +INPAN M NQ P P Q +PLST R P+ Sbjct: 9 TSITKSSPTDAMGGGCPIAHDINPANHM-YKPNQNPHPDQTKPLSTERITSTIPR 62
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8J5H6 |
Definition |
tr|A8J5H6|A8J5H6_CHLRE Predicted protein OS=Chlamydomonas reinhardtii |
Align length |
88 |
Score (bit) |
56.2 |
E-value |
5.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955635|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_K03, 5' (623 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8J5H6|A8J5H6_CHLRE Predicted protein OS=Chlamydomonas reinha... 56 5e-09 tr|A8J5J2|A8J5J2_CHLRE Cytochrome c heme lyase OS=Chlamydomonas ... 56 5e-09 tr|A8WT56|A8WT56_CAEBR CBR-CCHL-1 protein OS=Caenorhabditis brig... 34 0.010 tr|B7G6M9|B7G6M9_PHATR Predicted protein (Fragment) OS=Phaeodact... 37 0.021 tr|A7RTZ6|A7RTZ6_NEMVE Predicted protein OS=Nematostella vectens... 33 0.099 tr|Q4RZJ2|Q4RZJ2_TETNG Chromosome undetermined SCAF14815, whole ... 37 0.17 tr|Q7QFU4|Q7QFU4_ANOGA AGAP003843-PA OS=Anopheles gambiae GN=AGA... 39 0.25 tr|Q803H2|Q803H2_DANRE Holocytochrome c synthase OS=Danio rerio ... 33 0.59 tr|Q4P9Y2|Q4P9Y2_USTMA Putative uncharacterized protein OS=Ustil... 37 0.73 tr|Q6DGN8|Q6DGN8_DANRE Holocytochrome c synthetase a OS=Danio re... 32 0.76 tr|Q6DCG6|Q6DCG6_XENLA Hccs-prov protein OS=Xenopus laevis GN=hc... 33 0.76 tr|B7PEK0|B7PEK0_IXOSC Holocytochrome C synthase/heme-lyase, put... 37 1.2 tr|A8NQI1|A8NQI1_BRUMA Cytochrome C-type heme lyase, putative OS... 37 1.2 tr|B8MDW9|B8MDW9_9EURO Nonribosomal peptide synthase, putative O... 36 1.6 tr|B5X177|B5X177_SALSA Cytochrome c-type heme lyase OS=Salmo sal... 36 2.1 tr|B4K6L0|B4K6L0_DROMO GI22295 OS=Drosophila mojavensis GN=GI222... 35 3.6 tr|B4JRL5|B4JRL5_DROGR GH19837 OS=Drosophila grimshawi GN=GH1983... 35 3.6 tr|B3LVL0|B3LVL0_DROAN GF16950 OS=Drosophila ananassae GN=GF1695... 35 3.6 tr|Q1DN98|Q1DN98_COCIM Putative uncharacterized protein OS=Cocci... 35 3.6 tr|B2KYH1|B2KYH1_9PROC TruF2 OS=uncultured Prochloron sp. 06037A... 35 4.7 tr|Q4PEE4|Q4PEE4_USTMA Putative uncharacterized protein OS=Ustil... 35 4.7 tr|Q00TD2|Q00TD2_OSTTA Holocytochrome c synthase/heme-lyase (ISS... 34 6.2 tr|B8NL21|B8NL21_ASPFL Protein RDR1, putative OS=Aspergillus fla... 34 6.2 tr|B4M0N3|B4M0N3_DROVI GJ24087 OS=Drosophila virilis GN=GJ24087 ... 34 8.0 tr|Q2U5H9|Q2U5H9_ASPOR Predicted protein OS=Aspergillus oryzae G... 34 8.0
>tr|A8J5H6|A8J5H6_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_192603 PE=4 SV=1 Length = 322
Score = 56.2 bits (134), Expect(2) = 5e-09 Identities = 33/88 (37%), Positives = 47/88 (53%) Frame = +2
Query: 335 KYKHPHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514 KYK+P VY+VYG+RI+ N Q + P A G+ + ++P N Sbjct: 209 KYKNPAVYNVYGQRINDPNSQAK------------------PSPLASITGA-DVLDPKNN 249
Query: 515 MPVHANQVPAPGQKEPLSTLRQKIDYPK 598 MP+ NQ+P PGQ++PLST R + PK Sbjct: 250 MPLEPNQLPCPGQRKPLSTERVASNIPK 277
Score = 27.3 bits (59), Expect(2) = 5e-09 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3
Query: 585 STIPKGGTEDTWV 623 S IPKGGTE TW+ Sbjct: 273 SNIPKGGTESTWL 285
>tr|A8J5J2|A8J5J2_CHLRE Cytochrome c heme lyase OS=Chlamydomonas reinhardtii GN=HCS1 PE=4 SV=1 Length = 292
Score = 56.2 bits (134), Expect(2) = 5e-09 Identities = 33/88 (37%), Positives = 47/88 (53%) Frame = +2
Query: 335 KYKHPHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514 KYK+P VY+VYG+RI+ N Q + P A G+ + ++P N Sbjct: 39 KYKNPAVYNVYGQRINDPNSQAK------------------PSPLASITGA-DVLDPKNN 79
Query: 515 MPVHANQVPAPGQKEPLSTLRQKIDYPK 598 MP+ NQ+P PGQ++PLST R + PK Sbjct: 80 MPLEPNQLPCPGQRKPLSTERVASNIPK 107
Score = 27.3 bits (59), Expect(2) = 5e-09 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3
Query: 585 STIPKGGTEDTWV 623 S IPKGGTE TW+ Sbjct: 103 SNIPKGGTESTWL 115
>tr|A8WT56|A8WT56_CAEBR CBR-CCHL-1 protein OS=Caenorhabditis briggsae GN=Cbr-cchl-1 PE=4 SV=1 Length = 281
Score = 34.3 bits (77), Expect(2) = 0.010 Identities = 18/34 (52%), Positives = 18/34 (52%) Frame = +2
Query: 497 INPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 INP N H NQ PAP Q PL T R K PK Sbjct: 67 INPLNNELEHPNQKPAPDQPFPLPTNRVKSTIPK 100
Score = 27.7 bits (60), Expect(2) = 0.010 Identities = 13/15 (86%), Positives = 13/15 (86%), Gaps = 1/15 (6%) Frame = +3
Query: 582 KSTIPKGGTE-DTWV 623 KSTIPK GTE DTWV Sbjct: 95 KSTIPKAGTEKDTWV 109
>tr|B7G6M9|B7G6M9_PHATR Predicted protein (Fragment) OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_6437 PE=4 SV=1 Length = 212
Score = 37.4 bits (85), Expect(2) = 0.021 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = +2
Query: 491 EEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 + I+P N MP ANQ+PAPGQ + L T R PK Sbjct: 14 QPIDPKNNMPKIANQLPAPGQSKELPTERVHSTIPK 49
Score = 23.5 bits (49), Expect(2) = 0.021 Identities = 10/13 (76%), Positives = 12/13 (92%), Gaps = 1/13 (7%) Frame = +3
Query: 585 STIPKGGTED-TW 620 STIPKGGT++ TW Sbjct: 45 STIPKGGTDNSTW 57
>tr|A7RTZ6|A7RTZ6_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g228742 PE=4 SV=1 Length = 241
Score = 33.1 bits (74), Expect(2) = 0.099 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = +2
Query: 497 INPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 ++P N MP ANQ P+PGQ PLST R PK Sbjct: 33 LDPTNMMPP-ANQQPSPGQPFPLSTDRVVSSIPK 65
Score = 25.4 bits (54), Expect(2) = 0.099 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +3
Query: 585 STIPKGGTEDTWV 623 S+IPKGG+ D WV Sbjct: 61 SSIPKGGSNDKWV 73
>tr|Q4RZJ2|Q4RZJ2_TETNG Chromosome undetermined SCAF14815, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00026456001 PE=4 SV=1 Length = 221
Score = 37.4 bits (85), Expect(2) = 0.17 Identities = 21/47 (44%), Positives = 29/47 (61%) Frame = +2
Query: 458 PQQDARPGGSFEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 P + AR G S +++P N MP NQVPAP Q PLS +R++ P+ Sbjct: 21 PMKAARRGQS--DVDPTNMMPP-PNQVPAPDQPFPLSVVREESTIPR 64
Score = 20.4 bits (41), Expect(2) = 0.17 Identities = 7/14 (50%), Positives = 10/14 (71%) Frame = +3
Query: 582 KSTIPKGGTEDTWV 623 +STIP+ E+ WV Sbjct: 59 ESTIPRFNNENNWV 72
>tr|Q7QFU4|Q7QFU4_ANOGA AGAP003843-PA OS=Anopheles gambiae GN=AGAP003843 PE=4 SV=2 Length = 278
Score = 38.9 bits (89), Expect = 0.25 Identities = 21/35 (60%), Positives = 22/35 (62%) Frame = +2
Query: 494 EINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 E+NP N MP ANQ PAPGQ PL T RQ PK Sbjct: 75 EVNPLNMMPP-ANQNPAPGQPFPLPTERQVSSIPK 108
>tr|Q803H2|Q803H2_DANRE Holocytochrome c synthase OS=Danio rerio GN=hccs PE=2 SV=1 Length = 269
Score = 32.7 bits (73), Expect(2) = 0.59 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +2
Query: 497 INPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 I+P N MP NQVPAP Q PLS R++ P+ Sbjct: 80 IDPTNMMPP-PNQVPAPDQPFPLSVKREESKIPR 112
Score = 23.1 bits (48), Expect(2) = 0.59 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +3
Query: 582 KSTIPKGGTEDTWV 623 +S IP+ GTE WV Sbjct: 107 ESKIPRSGTEQNWV 120
>tr|Q4P9Y2|Q4P9Y2_USTMA Putative uncharacterized protein OS=Ustilago maydis GN=UM03081.1 PE=4 SV=1 Length = 1348
Score = 37.4 bits (85), Expect = 0.73 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +2
Query: 335 KYKHPHVYDVYGRRIDQQNLQGEKAEVWRMPSFLYTSSFYNPQQDARPGGSFEEINPANR 514 +Y+ P + DVY RR+ EKA++W + LY +Y + GG +N R Sbjct: 301 QYRAPEMVDVYQRRVID-----EKADIWALGVLLYKLCYYTTPFEENGGGPLAILNVQYR 355
Query: 515 MP 520 +P Sbjct: 356 IP 357
>tr|Q6DGN8|Q6DGN8_DANRE Holocytochrome c synthetase a OS=Danio rerio GN=hccsa PE=2 SV=1 Length = 276
Score = 32.0 bits (71), Expect(2) = 0.76 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2
Query: 485 SFEEINPANRMPVHANQVPAPGQKEPLSTLRQKIDYPK 598 + +INPAN MP NQ P+ Q PLS +R++ P+ Sbjct: 85 TLSDINPANMMP-PPNQQPSADQPFPLSVVREESTIPR 121
Score = 23.5 bits (49), Expect(2) = 0.76 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +3
Query: 582 KSTIPKGGTEDTWV 623 +STIP+ G E WV Sbjct: 116 ESTIPRAGAEQNWV 129
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