DK955642 |
Clone id |
TST39A01NGRL0023_K10 |
Library |
TST39 |
Length |
489 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_K10. 5' end sequence. |
Accession |
DK955642 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL594Contig1 |
Sequence |
GGTGCTGCAAACAGATCAGATCTGTAGTATGCCTAGGTCTTGCGATGCCTGCCAGACCTC CACGGCCCTTGTCTTCTGCAGAGCAGATGCTGCATATCTCTGTTTGGCCTGCGATCTCAA AGTCCATGGCGCCAACAAGTTAGCCTCTCGCCATGAACGCGTGTGGATGTGTGAGGTCTG TGAGCAGGCACCTGCTGTTGTAACATGTAAGGCGGATGCGGCATACCTCTGCTTCTCCTG TGATGCAGATATCCACTCTGCTAATCCCCTGGCGAATCGTCATGAGAGGGTTCCTGTTCT GCCCTTCTATGAATCCCCAGGACTCATTAAGCTCTCCCATGTTAATGTTGCTGCTCCACA TTCATCAGATGTCGGCGGTTGTGGCAGTGCAACCTCTGACGGAGAAGAGGATGATGACGA GAGATCTGCTGCAGAGGCGGAGTCTTGGCTCCTCCCTTCAGATGTAACCACTAAACATGG TCCAATAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q940T9 |
Definition |
sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana |
Align length |
120 |
Score (bit) |
142.0 |
E-value |
6.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955642|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_K10, 5' (489 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arab... 142 6e-34 sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arab... 140 3e-33 sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arab... 128 2e-29 sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arab... 114 2e-25 sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arab... 112 7e-25 sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis... 106 6e-23 sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Ar... 68 2e-11 sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thalia... 67 4e-11 sp|Q9SYM2|STHY_ARATH Putative salt tolerance-like protein At1g78... 67 4e-11 sp|Q9LQZ7|STHX_ARATH Putative salt tolerance-like protein At1g75... 67 6e-11 sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Ar... 66 7e-11 sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Ar... 65 1e-10 sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis t... 62 1e-09 sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Ar... 60 5e-09 sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=A... 59 1e-08 sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Ar... 59 1e-08 sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arab... 58 3e-08 sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE... 56 1e-07 sp|Q9LJ44|COL12_ARATH Putative zinc finger protein CONSTANS-LIKE... 55 2e-07 sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arab... 54 4e-07 sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arab... 51 2e-06 sp|Q9M9B3|COL8_ARATH Putative zinc finger protein CONSTANS-LIKE ... 50 7e-06 sp|P36407|ARD1_RAT GTP-binding protein ARD-1 (Fragment) OS=Rattu... 33 0.90 sp|Q8BGX0|ARD1_MOUSE GTP-binding protein ARD-1 OS=Mus musculus G... 33 0.90 sp|P36406|ARD1_HUMAN GTP-binding protein ARD-1 OS=Homo sapiens G... 32 1.2 sp|Q02930|CREB5_HUMAN cAMP-responsive element-binding protein 5 ... 31 2.6 sp|Q0CT27|CCR4_ASPTN Glucose-repressible alcohol dehydrogenase t... 31 2.6 sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog OS=Homo sapi... 31 3.4 sp|Q8K1L0|CREB5_MOUSE cAMP-responsive element-binding protein 5 ... 31 3.4 sp|Q4FRX3|MAO1_PSYA2 NAD-dependent malic enzyme OS=Psychrobacter... 30 4.5
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2 Length = 362
Score = 142 bits (359), Expect = 6e-34 Identities = 72/120 (60%), Positives = 84/120 (70%), Gaps = 4/120 (3%) Frame = +2
Query: 41 CDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAVVTCKADA 220 CD+C+++TA ++CR KVH ANKLASRH RVWMCEVCEQAPA VTCKADA Sbjct: 6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65
Query: 221 AYLCFSCDADIHSANPLANRHERVPVLPFYE---SPGLIKLSHVNVAAP-HSSDVGGCGS 388 A LC +CD DIHSANPLA RHERVPV PFY+ S G +K + VN + SD+ G GS Sbjct: 66 AALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGS 125
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1 Length = 294
Score = 140 bits (353), Expect = 3e-33 Identities = 68/120 (56%), Positives = 81/120 (67%), Gaps = 2/120 (1%) Frame = +2
Query: 20 ICSMPRSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAV 199 + S R CD+C+++ A +FCR K+H ANKLASRHERVW+CEVCEQAPA Sbjct: 1 MASSSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAH 60
Query: 200 VTCKADAAYLCFSCDADIHSANPLANRHERVPVLPFYESPGLIK--LSHVNVAAPHSSDV 373 VTCKADAA LC +CD DIHSANPL+ RHERVP+ PFY++ G K S VN DV Sbjct: 61 VTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDEDGGDV 120
>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2 Length = 355
Score = 128 bits (321), Expect = 2e-29 Identities = 69/143 (48%), Positives = 85/143 (59%) Frame = +2
Query: 35 RSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAVVTCKA 214 RSCDAC++ TA VFCR ++H +RHERVW+CEVCEQAPA VTCKA Sbjct: 20 RSCDACKSVTAAVFCRVDSAFLCIACDTRIHSF----TRHERVWVCEVCEQAPAAVTCKA 75
Query: 215 DAAYLCFSCDADIHSANPLANRHERVPVLPFYESPGLIKLSHVNVAAPHSSDVGGCGSAT 394 DAA LC SCDADIHSANPLA+RHERVPV F++S + + ++A + + G S T Sbjct: 76 DAAALCVSCDADIHSANPLASRHERVPVETFFDS---AETAVAKISASSTFGILG-SSTT 131
Query: 395 XXXXXXXXXXXXXXXXXWLLPSD 463 WLLP+D Sbjct: 132 VDLTAVPVMADDLGLCPWLLPND 154
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1 Length = 355
Score = 114 bits (286), Expect = 2e-25 Identities = 54/112 (48%), Positives = 73/112 (65%) Frame = +2
Query: 35 RSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAVVTCKA 214 ++CD C+++ V+CR +VH AN+LASRHERV +C+ CE+APA CKA Sbjct: 10 QACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKA 69
Query: 215 DAAYLCFSCDADIHSANPLANRHERVPVLPFYESPGLIKLSHVNVAAPHSSD 370 DAA LC +CD++IHSANPLA RH+RVP+LP E S+ + A HS + Sbjct: 70 DAASLCTTCDSEIHSANPLARRHQRVPILPISE------YSYSSTATNHSCE 115
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1 Length = 347
Score = 112 bits (281), Expect = 7e-25 Identities = 49/90 (54%), Positives = 63/90 (70%) Frame = +2
Query: 35 RSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAVVTCKA 214 R+CD C+++ V+C +VH AN++ASRHERV +C+ CE APA CKA Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKA 73
Query: 215 DAAYLCFSCDADIHSANPLANRHERVPVLP 304 DAA LC +CDA+IHSANPLA RH+RVP+LP Sbjct: 74 DAASLCTACDAEIHSANPLARRHQRVPILP 103
Score = 60.1 bits (144), Expect = 5e-09 Identities = 26/49 (53%), Positives = 34/49 (69%) Frame = +2
Query: 170 CEVCEQAPAVVTCKADAAYLCFSCDADIHSANPLANRHERVPVLPFYES 316 C+ C A V C+AD+AYLC +CDA +H+AN +A+RHERV V ES Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCES 64
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1 Length = 373
Score = 106 bits (264), Expect = 6e-23 Identities = 45/90 (50%), Positives = 62/90 (68%) Frame = +2
Query: 35 RSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAVVTCKA 214 R CD C+++ V+C +VH AN++ASRH+RV +CE CE+APA C+A Sbjct: 18 RPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEA 77
Query: 215 DAAYLCFSCDADIHSANPLANRHERVPVLP 304 D A LC +CD+++HSANPLA RH+RVP+LP Sbjct: 78 DDASLCTACDSEVHSANPLARRHQRVPILP 107
Score = 58.9 bits (141), Expect = 1e-08 Identities = 25/52 (48%), Positives = 33/52 (63%) Frame = +2
Query: 143 ASRHERVWMCEVCEQAPAVVTCKADAAYLCFSCDADIHSANPLANRHERVPV 298 + + R C+ C V C AD+AYLC SCDA +HSAN +A+RH+RV V Sbjct: 11 SGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV 62
>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2 Length = 402
Score = 68.2 bits (165), Expect = 2e-11 Identities = 34/102 (33%), Positives = 50/102 (49%) Frame = +2
Query: 38 SCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWMCEVCEQAPAVVTCKAD 217 +C+ C TA++FCR VH AN L+ +H R +C+ C + P V C D Sbjct: 11 ACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTD 70
Query: 218 AAYLCFSCDADIHSANPLANRHERVPVLPFYESPGLIKLSHV 343 LC CD D+H + + HER V F P +++L+ V Sbjct: 71 NLVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAV 112
Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/48 (47%), Positives = 29/48 (60%) Frame = +2
Query: 146 SRHERVWMCEVCEQAPAVVTCKADAAYLCFSCDADIHSANPLANRHER 289 S E V CE C + AV+ C+AD A LC CD +HSAN L+ +H R Sbjct: 4 STTESVVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVR 51
>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1 Length = 248
Score = 67.0 bits (162), Expect = 4e-11 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Frame = +2
Query: 29 MPRSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWM---------CEVC 181 M CD C+ + A V C ++H ANKLAS+H+R+ + C++C Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60
Query: 182 EQAPAVVTCKADAAYLCFSCDADIHSANPLANRHER 289 ++ A + C D A LC CD IH AN + H+R Sbjct: 61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
Score = 58.2 bits (139), Expect = 2e-08 Identities = 24/41 (58%), Positives = 32/41 (78%) Frame = +2
Query: 170 CEVCEQAPAVVTCKADAAYLCFSCDADIHSANPLANRHERV 292 C+VCE+APA V C AD A LC CD +IH+AN LA++H+R+ Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRL 45
>sp|Q9SYM2|STHY_ARATH Putative salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2 Length = 299
Score = 67.0 bits (162), Expect = 4e-11 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%) Frame = +2
Query: 29 MPRSCDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWM---------CEVC 181 M C+ C+ + A V C K+H ANKLA +H+RV + C++C Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60
Query: 182 EQAPAVVTCKADAAYLCFSCDADIHSANPLANRHER 289 ++A C D A LC CD IH+ NP + H+R Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQR 96
Score = 58.5 bits (140), Expect = 2e-08 Identities = 25/43 (58%), Positives = 31/43 (72%) Frame = +2
Query: 170 CEVCEQAPAVVTCKADAAYLCFSCDADIHSANPLANRHERVPV 298 C VCE A A V C AD A LC++CD IH+AN LA +H+RVP+ Sbjct: 5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL 47
>sp|Q9LQZ7|STHX_ARATH Putative salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1 Length = 331
Score = 66.6 bits (161), Expect = 6e-11 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 12/95 (12%) Frame = +2
Query: 41 CDACQTSTALVFCRXXXXXXXXXXXXKVHGANKLASRHERVWM------------CEVCE 184 CD C A VFC +VH ANKLAS+H R + C++C+ Sbjct: 5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQ 64
Query: 185 QAPAVVTCKADAAYLCFSCDADIHSANPLANRHER 289 A++ C+ D A LC CD+ IH+AN +H+R Sbjct: 65 DKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDR 99
Score = 48.5 bits (114), Expect = 2e-05 Identities = 21/44 (47%), Positives = 28/44 (63%) Frame = +2
Query: 170 CEVCEQAPAVVTCKADAAYLCFSCDADIHSANPLANRHERVPVL 301 C+VC++ A V C AD A LC CD +H AN LA++H R +L Sbjct: 5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLL 48
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4W1E8 |
Definition |
tr|Q4W1E8|Q4W1E8_PHYPA CONSTANS-like 3 OS=Physcomitrella patens |
Align length |
110 |
Score (bit) |
151.0 |
E-value |
1.0e-35 |
Report |
|