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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955646
Clone id TST39A01NGRL0023_K14
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_K14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CATTGGTTGCTGCTGCAACGTCCCTCGGTTGCTCGCATATTACCATCTACTGGAGAGAGA
GTCTGTGTGTACAAATTACAAGTTCTCGTGAGCCTTGAGGGCTGCTGCTTCCCTCTCTCT
CTCTCTCTCTCTCTCTCTCAGGTTGTCTCTTTCTAAGGCAAGAAGGAGGTGCAGATCACC
CTCGTGATCCTTCATCGACTCCATCGCTCCTCACATCTGTTAAGTAAATTAGCATCTCTC
TCTCTCTCTCTCTCTCTCTCTGGGATGGACTTCTTCATGCTTCTGTTCCACAATCGGAGA
AGACGACGCCTCGAAGCAGCCTACGGATCGACCCTGTTATTCACCTACATTCTTTCATGC
ATTTCTCTGTATTTTTTGGCCAATCCTGCCGAGTCTGCAAGCAACCTGGGCATTAATTAT
GGCCGAATCGCTGACAATCTGCCGACGCCAGCACAAAGCAGTTGCAATTTTGCAGTCTAT
TTCTGTCACAAAAACTCGGATTTATGA
■■Homology search results ■■ -
sp_hit_id Q9M069
Definition sp|Q9M069|E137_ARATH Putative glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana
Align length 39
Score (bit) 33.5
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955646|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_K14, 5'
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M069|E137_ARATH Putative glucan endo-1,3-beta-glucosidase 7...    33   0.27 
sp|Q8L868|E1311_ARATH Putative glucan endo-1,3-beta-glucosidase ...    34   0.35 
sp|Q9FHX5|E1310_ARATH Putative glucan endo-1,3-beta-glucosidase ...    34   0.46 
sp|Q06915|EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6...    33   0.78 
sp|Q9ZQG9|E1314_ARATH Putative glucan endo-1,3-beta-glucosidase ...    32   1.7  
sp|O28273|MOAA_ARCFU Probable molybdenum cofactor biosynthesis p...    31   3.9  
sp|Q8VYE5|E1312_ARATH Putative glucan endo-1,3-beta-glucosidase ...    31   3.9  
sp|Q03557|GATH_YEAST Probable glutamyl-tRNA(Gln) amidotransferas...    30   6.6  
sp|P56114|GATA_HELPY Glutamyl-tRNA(Gln) amidotransferase subunit...    30   6.6  
sp|Q1CT39|GATA_HELPH Glutamyl-tRNA(Gln) amidotransferase subunit...    30   6.6  
sp|Q17WM2|GATA_HELAH Glutamyl-tRNA(Gln) amidotransferase subunit...    30   6.6  
sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase OS=Triticu...    30   6.6  
sp|Q9ZL13|GATA_HELPJ Glutamyl-tRNA(Gln) amidotransferase subunit...    30   8.6  

>sp|Q9M069|E137_ARATH Putative glucan endo-1,3-beta-glucosidase 7
           OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=1
          Length = 356

 Score = 33.5 bits (75), Expect(2) = 0.27
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 6/39 (15%)
 Frame = +1

Query: 361 ISLYFLAN-----PAESASN-LGINYGRIADNLPTPAQS 459
           IS+YFL       P+  A   +G+NYG++ADNLP P+++
Sbjct: 5   ISIYFLLIFLSHFPSSHAEPFIGVNYGQVADNLPPPSET 43



 Score = 21.2 bits (43), Expect(2) = 0.27
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 455 KAVAILQSISVTKTRIY 505
           + V +LQS S+ K R+Y
Sbjct: 42  ETVKLLQSTSIQKVRLY 58


>sp|Q8L868|E1311_ARATH Putative glucan endo-1,3-beta-glucosidase 11
           OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
          Length = 426

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +1

Query: 310 LEAAYGSTLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTP 450
           L + + S+LLF   L+ I L        + +++G+NYG+I DNLP+P
Sbjct: 3   LTSFHRSSLLFLISLTLIIL------PTTTTSIGVNYGQIGDNLPSP 43


>sp|Q9FHX5|E1310_ARATH Putative glucan endo-1,3-beta-glucosidase 10
           OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1
          Length = 425

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTP 450
           S+L   + L C++L+ L       S++GINYG++A+NLP P
Sbjct: 4   SSLQSLFSLFCLALFSLPL---IVSSIGINYGQVANNLPPP 41


>sp|Q06915|EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6
           OS=Arabidopsis thaliana GN=A6 PE=2 SV=1
          Length = 478

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 397 ASNLGINYGRIADNLPTPAQS 459
           AS +GINYGR  +NLP+P QS
Sbjct: 39  ASKIGINYGRRGNNLPSPYQS 59


>sp|Q9ZQG9|E1314_ARATH Putative glucan endo-1,3-beta-glucosidase 14
           OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2
          Length = 392

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 367 LYFLANPAESASNLGINYGRIADNLPTPAQ 456
           L+   +       +GINYG+IA+NLP+PA+
Sbjct: 16  LFLTLSERIKGQGVGINYGQIANNLPSPAR 45


>sp|O28273|MOAA_ARCFU Probable molybdenum cofactor biosynthesis
           protein A OS=Archaeoglobus fulgidus GN=moaA PE=3 SV=1
          Length = 296

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 418 YGRIADNLPTPAQSSCNFAVYFCHKNSD 501
           YGR+  NL       CN   ++CHK  +
Sbjct: 6   YGRVVTNLRIAVTKKCNLRCFYCHKEGE 33


>sp|Q8VYE5|E1312_ARATH Putative glucan endo-1,3-beta-glucosidase 12
           OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1
          Length = 534

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 397 ASNLGINYGRIADNLPTPAQSS 462
           AS +GI YGR ADNLP+P + S
Sbjct: 24  ASKIGICYGRNADNLPSPNRVS 45


>sp|Q03557|GATH_YEAST Probable glutamyl-tRNA(Gln) amidotransferase
           subunit A, mitochondrial OS=Saccharomyces cerevisiae
           GN=LRC6 PE=1 SV=1
          Length = 464

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = +1

Query: 349 ILSCISLYFLANPAESASNL----GINYG 423
           + +C+ +Y+  +PAE+ASNL    GI YG
Sbjct: 278 VKNCLPIYYTLSPAEAASNLSRYDGIRYG 306


>sp|P56114|GATA_HELPY Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Helicobacter pylori GN=gatA PE=3 SV=1
          Length = 453

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +1

Query: 361 ISLYFLANPAESASNL----GINYGRIADNL 441
           IS+Y++ + AE++SNL    G+ YGR A N+
Sbjct: 278 ISIYYIISMAEASSNLARFDGVRYGRRAQNI 308


>sp|Q1CT39|GATA_HELPH Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Helicobacter pylori (strain HPAG1) GN=gatA PE=3 SV=1
          Length = 453

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +1

Query: 361 ISLYFLANPAESASNL----GINYGRIADNL 441
           IS+Y++ + AE++SNL    G+ YGR A N+
Sbjct: 278 ISIYYIISMAEASSNLARFDGVRYGRRAQNI 308
tr_hit_id Q9LP27
Definition tr|Q9LP27|Q9LP27_ARATH Putative beta-1,3-glucanase 4 (Beta-1,3-glucanase, putative) OS=Arabidopsis thaliana
Align length 47
Score (bit) 43.9
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955646|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_K14, 5'
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LP27|Q9LP27_ARATH Putative beta-1,3-glucanase 4 (Beta-1,3-g...    44   0.005
tr|O49352|O49352_ARATH Bg4 protein OS=Arabidopsis thaliana GN=bg...    43   0.008
tr|Q8L837|Q8L837_ARATH Beta-1,3-glucanase-like protein OS=Arabid...    39   0.009
tr|O49737|O49737_ARATH Beta-1, 3-glucanase-like protein OS=Arabi...    39   0.009
tr|A9PG28|A9PG28_POPTR Putative uncharacterized protein OS=Popul...    40   0.050
tr|A9SNQ8|A9SNQ8_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.12 
tr|Q8LEU0|Q8LEU0_ARATH Beta-1,3-glucanase bg4 OS=Arabidopsis tha...    39   0.15 
tr|Q7XVG8|Q7XVG8_ORYSJ OSJNBa0073L04.8 protein OS=Oryza sativa s...    39   0.19 
tr|Q0JDD4|Q0JDD4_ORYSJ Os04g0412300 protein OS=Oryza sativa subs...    39   0.19 
tr|Q01IT5|Q01IT5_ORYSA OSIGBa0134P10.1 protein (H0717B12.10 prot...    39   0.19 
tr|B4FA15|B4FA15_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.19 
tr|A3ATN2|A3ATN2_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.19 
tr|Q8H0I0|Q8H0I0_TOBAC Beta-1,3-glucanase-like protein OS=Nicoti...    38   0.25 
tr|B4FYP4|B4FYP4_MAIZE Glucan endo-1,3-beta-glucosidase 7 OS=Zea...    38   0.25 
tr|Q4PSF2|Q4PSF2_ARATH Putative beta-1,3-glucanase OS=Arabidopsi...    37   0.42 
tr|B6TU78|B6TU78_MAIZE Glucan endo-1,3-beta-glucosidase 7 OS=Zea...    37   0.42 
tr|B4FA75|B4FA75_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.42 
tr|Q8VZ16|Q8VZ16_ARATH Putative beta-1,3-glucanase OS=Arabidopsi...    37   0.55 
tr|Q8H849|Q8H849_ORYSJ Os03g0227400 protein OS=Oryza sativa subs...    37   0.55 
tr|Q10PN7|Q10PN7_ORYSJ Glucan endo-1,3-beta-glucosidase 7, putat...    37   0.55 
tr|A7Q9J5|A7Q9J5_VITVI Chromosome chr5 scaffold_67, whole genome...    37   0.55 
tr|A5AWU0|A5AWU0_VITVI Putative uncharacterized protein (Fragmen...    37   0.55 
tr|A3AFP8|A3AFP8_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.55 
tr|Q9M453|Q9M453_HIEPI Putative beta-1,3-glucanase OS=Hieracium ...    37   0.72 
tr|Q9FXL4|Q9FXL4_TOBAC Elicitor inducible beta-1,3-glucanase NtE...    37   0.72 
tr|B4G1J7|B4G1J7_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.72 
tr|B4FJH8|B4FJH8_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.72 
tr|A9PHI4|A9PHI4_POPTR Putative uncharacterized protein OS=Popul...    37   0.72 
tr|Q9SIX5|Q9SIX5_ARATH Putative beta-1,3-glucanase OS=Arabidopsi...    36   0.94 
tr|Q9AVE5|Q9AVE5_PYRPY Endo-1,3-beta-glucanase-like protein OS=P...    36   0.94 

>tr|Q9LP27|Q9LP27_ARATH Putative beta-1,3-glucanase 4
           (Beta-1,3-glucanase, putative) OS=Arabidopsis thaliana
           GN=T16O9.3 PE=3 SV=1
          Length = 335

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +1

Query: 322 YGSTLLFTYILSCISLYFLANPA---ESASNLGINYGRIADNLPTPA 453
           Y S  LF + LSCI L F  N +    +A+++G+NYG + DN PTP+
Sbjct: 3   YSSKKLFLFFLSCIMLTFNYNTSGFVAAANSIGLNYGLLGDNFPTPS 49


>tr|O49352|O49352_ARATH Bg4 protein OS=Arabidopsis thaliana GN=bg4
           PE=3 SV=1
          Length = 345

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
 Frame = +1

Query: 322 YGSTLLFTYILSCISLYFLANPA---ESASNLGINYGRIADNLPTPA 453
           Y    LF + LSCI LY  +N +    +A+++G+NYG + DNLP+P+
Sbjct: 3   YSPKKLFLFFLSCIVLYVNSNNSGFVTAANSIGLNYGLLGDNLPSPS 49


>tr|Q8L837|Q8L837_ARATH Beta-1,3-glucanase-like protein
           OS=Arabidopsis thaliana GN=At4g18340 PE=2 SV=1
          Length = 397

 Score = 38.9 bits (89), Expect(2) = 0.009
 Identities = 17/41 (41%), Positives = 30/41 (73%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTP 450
           S+L+  ++L  +SL F  N  ++ ++LGINYG++ +NLP+P
Sbjct: 10  SSLIHVFLL--LSLVFSGNILQTVTSLGINYGQVGNNLPSP 48



 Score = 24.6 bits (52), Expect(2) = 0.009
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 455 KAVAILQSISVTKTRIY 505
           K + +L+S+ +TKTRIY
Sbjct: 50  KVINLLRSLRITKTRIY 66


>tr|O49737|O49737_ARATH Beta-1, 3-glucanase-like protein
           OS=Arabidopsis thaliana GN=T9A21.190 PE=3 SV=1
          Length = 383

 Score = 38.9 bits (89), Expect(2) = 0.009
 Identities = 17/41 (41%), Positives = 30/41 (73%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTP 450
           S+L+  ++L  +SL F  N  ++ ++LGINYG++ +NLP+P
Sbjct: 10  SSLIHVFLL--LSLVFSGNILQTVTSLGINYGQVGNNLPSP 48



 Score = 24.6 bits (52), Expect(2) = 0.009
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 455 KAVAILQSISVTKTRIY 505
           K + +L+S+ +TKTRIY
Sbjct: 50  KVINLLRSLRITKTRIY 66


>tr|A9PG28|A9PG28_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 456

 Score = 40.4 bits (93), Expect = 0.050
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTPAQSS 462
           S L+F Y+L   +L      A S S +G+NYG++ADNLP+P+ ++
Sbjct: 4   SILIFLYLLQSFNL------ASSESFIGVNYGQVADNLPSPSATA 42


>tr|A9SNQ8|A9SNQ8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214139 PE=3 SV=1
          Length = 489

 Score = 38.1 bits (87), Expect(2) = 0.12
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 349 ILSCISLYFLANPAESASNLGINYGRIADNLPTPAQS 459
           I   IS++ L + AE++  +G+NYG   DNLPTP Q+
Sbjct: 11  IFQAISIFILISSAEAS--IGVNYGTYGDNLPTPTQA 45



 Score = 21.6 bits (44), Expect(2) = 0.12
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 455 KAVAILQSISVTKTRIY 505
           +AVA+L+   VT+ RIY
Sbjct: 44  QAVALLKKSGVTQARIY 60


>tr|Q8LEU0|Q8LEU0_ARATH Beta-1,3-glucanase bg4 OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 345

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +1

Query: 322 YGSTLLFTYILSCISLYFLANPA---ESASNLGINYGRIADNLPTPA 453
           Y    LF + LSCI LY   N +    +A+++G+NYG + DNL +P+
Sbjct: 3   YSPKKLFLFFLSCIVLYVNYNNSGFVTAANSIGLNYGLLGDNLSSPS 49


>tr|Q7XVG8|Q7XVG8_ORYSJ OSJNBa0073L04.8 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0073L04.8 PE=3 SV=2
          Length = 407

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTPAQSS 462
           ST LF  +L+ I    +   +    ++GINYG+IADNLP+P + S
Sbjct: 16  STRLFLLVLAVILTDQVLAASAQGMSIGINYGQIADNLPSPTRVS 60


>tr|Q0JDD4|Q0JDD4_ORYSJ Os04g0412300 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0412300 PE=2 SV=1
          Length = 393

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTPAQSS 462
           ST LF  +L+ I    +   +    ++GINYG+IADNLP+P + S
Sbjct: 16  STRLFLLVLAVILTDQVLAASAQGMSIGINYGQIADNLPSPTRVS 60


>tr|Q01IT5|Q01IT5_ORYSA OSIGBa0134P10.1 protein (H0717B12.10
           protein) OS=Oryza sativa GN=OSIGBa0134P10.1 PE=3 SV=1
          Length = 393

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 328 STLLFTYILSCISLYFLANPAESASNLGINYGRIADNLPTPAQSS 462
           ST LF  +L+ I    +   +    ++GINYG+IADNLP+P + S
Sbjct: 16  STRLFLLVLAVILTDQVLAASAQGMSIGINYGQIADNLPSPTRVS 60