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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955665
Clone id TST39A01NGRL0023_L10
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_L10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCTCAAACACAATCTTTGTTTGGTTGTTCGCGTGCCCTGCTCGCTCTCCTGTGGACAGT
ATTTCCCTCAGCGTTTGGGACCTGCGATACCTAGCCTCGAGATGCACTTTCACCAAGAAA
GGGGATTCTGTCAGAGTCTTTTAAGCAGGTTTAGTGAGATTTGCGGGGATACCTGAGACA
GCAGGAAGTGATTGAGATCTGCATGAGCATCTGAAATAATTCTGGCTTGGCGGAGATGAG
CACAAGCGCTATTCACGCAGCACACCTTGATTCTTTTAGCCAAAATCTACCAGCTGCAGA
TGCCAGTTTACCTAACTCTGGCTTGGGCAGTGGCCGGTCATCATTCTCTGGCGAGTTGAG
CAGTCATTGGAATTGCTCTGGTAGATTGAGCTGTGATCTCCACAAGGAAGCAAAAGGCCA
CCTCAGAAGCTTGCATGATTGTGAGCTGCGACACATCACCTGCGTCCACAATCTGAAGGA
CTCTAAGAAATCTTGCCATTCTGAAGAGAGAGTACCCCCTGTGTTTCCCATCAATTTGAG
CTCATGCCTTAGAGGATGGCTGTCTCAACTCTTTCATGCTAGTG
■■Homology search results ■■ -
sp_hit_id Q9ULS5
Definition sp|Q9ULS5|TMCC3_HUMAN Transmembrane and coiled-coil domains protein 3 OS=Homo sapiens
Align length 58
Score (bit) 30.4
E-value 6.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955665|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_L10, 5'
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ULS5|TMCC3_HUMAN Transmembrane and coiled-coil domains prot...    30   6.2  
sp|Q925U4|EDEM1_MOUSE ER degradation-enhancing alpha-mannosidase...    30   6.2  
sp|Q92611|EDEM1_HUMAN ER degradation-enhancing alpha-mannosidase...    30   6.2  
sp|Q9XZV1|SWP1_ENCCU Spore wall protein 1 OS=Encephalitozoon cun...    30   8.1  

>sp|Q9ULS5|TMCC3_HUMAN Transmembrane and coiled-coil domains protein
           3 OS=Homo sapiens GN=TMCC3 PE=2 SV=2
          Length = 477

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 348 NCSGRLSCDLHKE-AKGHLRSLHDCELRHITCVHNLKDSKKSCHSEERVPPVFPINLS 518
           N + R S D+ K+  K   RSL D  ++  T  H ++ SK         PPVF  N S
Sbjct: 146 NGASRSSKDISKDHLKDIHRSLKDAHVKSRTAPHCMESSKSGMPGVSLTPPVFVFNKS 203


>sp|Q925U4|EDEM1_MOUSE ER degradation-enhancing
           alpha-mannosidase-like 1 OS=Mus musculus GN=Edem1 PE=2
           SV=1
          Length = 652

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -3

Query: 493 GTLSSEWQDFLESFRLWTQVMCRSSQSCKLLRWPFASLWRSQLNLPEQFQ*LLNSPENDD 314
           G L + W D L++F    QV+    +    L   + ++W+    LPE++   L +P+   
Sbjct: 423 GQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLF 482

Query: 313 RPLPKPEL 290
            PL +PEL
Sbjct: 483 YPL-RPEL 489


>sp|Q92611|EDEM1_HUMAN ER degradation-enhancing
           alpha-mannosidase-like 1 OS=Homo sapiens GN=EDEM1 PE=1
           SV=1
          Length = 657

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -3

Query: 493 GTLSSEWQDFLESFRLWTQVMCRSSQSCKLLRWPFASLWRSQLNLPEQFQ*LLNSPENDD 314
           G L + W D L++F    QV+    +    L   + ++W+    LPE++   L +P+   
Sbjct: 428 GQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLF 487

Query: 313 RPLPKPEL 290
            PL +PEL
Sbjct: 488 YPL-RPEL 494


>sp|Q9XZV1|SWP1_ENCCU Spore wall protein 1 OS=Encephalitozoon
           cuniculi GN=SWP1 PE=2 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
 Frame = +3

Query: 351 CSGRLSCDLHKEAKGHLRSLHDCELRHITCVHNLKDS-------------KKSCHSEERV 491
           C   +S D+H E+  H  S  DC+ R        +DS               SC S E  
Sbjct: 54  CGDGMSSDVHDESSSHSSSSSDCKPRRRRHHRRYEDSCSFGSSDCDDSSTYSSCVSSECS 113

Query: 492 PPVFPINLS 518
           PP  P+ L+
Sbjct: 114 PPCRPVPLN 122
tr_hit_id B6LGA0
Definition tr|B6LGA0|B6LGA0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 68
Score (bit) 34.3
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955665|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_L10, 5'
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LGA0|B6LGA0_BRAFL Putative uncharacterized protein OS=Branc...    34   4.7  
tr|B5RTE1|B5RTE1_DEBHA DEHA2D06930p OS=Debaryomyces hansenii GN=...    34   6.2  
tr|B8FGJ1|B8FGJ1_9DELT PAS/PAC sensor signal transduction histid...    33   8.1  
tr|Q4U8S2|Q4U8S2_THEAN Coronin, putative OS=Theileria annulata G...    33   8.1  

>tr|B6LGA0|B6LGA0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_276750 PE=4 SV=1
          Length = 570

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -3

Query: 493 GTLSSEWQDFLESFRLWTQVMCRSSQSCKLLRWPFASLWRSQLNLPEQFQ*LLNSPENDD 314
           G+L+S W D L++F    QV+    +        + ++WR    LPE+F   L +P+   
Sbjct: 344 GSLASTWVDSLQAFWAGLQVLNGDIEEAICHHAVYYAIWRRYGALPERFNWHLKAPDVRF 403

Query: 313 RPLPKPEL 290
            PL +PEL
Sbjct: 404 YPL-RPEL 410


>tr|B5RTE1|B5RTE1_DEBHA DEHA2D06930p OS=Debaryomyces hansenii
           GN=DEHA2D06930g PE=4 SV=1
          Length = 846

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = -3

Query: 511 LMGNTG---GTLSSEWQDFLESFRLWTQVMCRSSQSCKLLRWPFASLWRSQLNLPEQFQ* 341
           + GN G   G+L+S W D L +F    QV+    Q        +  LW    ++PE++  
Sbjct: 339 IFGNVGVNDGSLASIWIDSLGAFWSGLQVLTGQLQDAIKTHLMYLKLWDHFDSIPERWNF 398

Query: 340 LLNSP--ENDD 314
           LLN    ENDD
Sbjct: 399 LLNKSQLENDD 409


>tr|B8FGJ1|B8FGJ1_9DELT PAS/PAC sensor signal transduction histidine
           kinase OS=Desulfatibacillum alkenivorans AK-01
           GN=Dalk_3210 PE=4 SV=1
          Length = 403

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
 Frame = -3

Query: 448 LWTQVMCRSSQSCKLLRWPFASLWRSQLNLPEQFQ*LLNSPENDDRPLPKPELGKLASAA 269
           +W++ M  + Q    L   FA  WR                E  D       + K     
Sbjct: 170 VWSRQMASAGQQAVFLAREFAQAWR----------------ETQDHISSLDNMAKEEPEL 213

Query: 268 GRFWLKESRCAA*I---ALVLISAKPELFQMLMQISITSCCL--------RYPRKSH*TC 122
           G FW K +  AA +   A ++ S  P + +ML  +++    +        R+ RK   T 
Sbjct: 214 GPFWAKFTEAAARLKDAAKMIASLDPAVNEMLRAVNLNQSIVNVFRLFRSRFERKGIRTA 273

Query: 121 LKDSDRIPF 95
           L  S +IPF
Sbjct: 274 LSLSTQIPF 282


>tr|Q4U8S2|Q4U8S2_THEAN Coronin, putative OS=Theileria annulata
           GN=TA10060 PE=4 SV=1
          Length = 447

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 514 KLMGNTGGTLSSEWQDFLESFRLWTQVMCRSSQSCKLLRWPFASLWRSQLN 362
           KL+G+TG  L  ++  F E+      ++C SS  C +  W  ++L   +LN
Sbjct: 72  KLLGHTGSILDIDFNGFNEN------ILCSSSDDCSIKIWDISNLESKELN 116