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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955668
Clone id TST39A01NGRL0023_L13
Library
Length 709
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_L13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCGGCAGATGCGGCATGGAAGATGGGGATGGAGGGAACGTTTATTTTTGTGAATAGCCAG
GTAGCGCCTCCGTATGTCCAGCTGCACGATGGAGACATTGTTGAAGTAAGGATGTAAGCA
AGGTTTTGAATGAAAACGGAGCATCCCCCACCCTGCCTACTATTCTTGTGAATATTCAAC
TGATTGAAAGATTGGAGGCACATTTGCCTCTACCTTCAAAGTTTATACGACCTTATGCAT
GCAGAAGAACAGATGAGAGGACACTGCTTGCCTGTTCTGAAAATGCCACAGCAGGGAAGA
GACCTTTTGCAATCAGCAGACGATTTGATTGCAATCGAAAGTCTGGAGTATTATGGCTCC
ATGGGGTACATATACCCCAAAGGCTCTCTGAATTTTGCCTATTATGAGCAATTTCTCATT
TGTAAAGAGACGAGGATTCTTCTAACGTGGTGCCTGTTGCAATTCCAGGAACTCTACCAC
CTTGTAAATCGTTTGTATCATCATTGTTCATATGGAACATCCCACAAGGAAAGGTCTAAA
GGGATAGTAATTTGCTGGCAATGATTTGGCTACCCCAACCCCTTGGAAATTTTTTGTATT
CCCCGAATTGGCTTTAAAATACCGGGGGGCCACCAGTTTGGCTTTTGGAAATTTTTTTGG
AAATTTCTAAAATTTTTTTAACCTGGGTTTTCAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9NX61
Definition sp|Q9NX61|T161A_HUMAN Transmembrane protein 161A OS=Homo sapiens
Align length 76
Score (bit) 31.2
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955668|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_L13, 5'
         (692 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NX61|T161A_HUMAN Transmembrane protein 161A OS=Homo sapiens...    31   5.5  
sp|Q8GXG1|ASPG2_ARATH Probable isoaspartyl peptidase/L-asparagin...    31   5.5  
sp|P13486|Y4066_RHIME Uncharacterized protein RA0666 OS=Rhizobiu...    31   7.2  
sp|Q2KI58|ZN181_BOVIN Zinc finger protein 181 OS=Bos taurus GN=Z...    30   9.4  
sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 hom...    30   9.4  
sp|P15552|NU5M_STRPU NADH-ubiquinone oxidoreductase chain 5 OS=S...    30   9.4  
sp|O73742|COE3_XENLA Transcription factor COE3 OS=Xenopus laevis...    30   9.4  

>sp|Q9NX61|T161A_HUMAN Transmembrane protein 161A OS=Homo sapiens
           GN=TMEM161A PE=2 SV=1
          Length = 479

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +1

Query: 307 LQSADDLIAIESLEYYGSMGY-IYPKGSLNF--AYYEQFLICKETRILLTWCLLQFQ--- 468
           L + D L+    LEY   + + +Y  G   F  AYY      KET I + WCLL      
Sbjct: 89  LTTVDALVLRFFLEYQWFVDFAVYSGGVYLFTEAYYYMLGPAKETNIAVFWCLLTVTFSI 148

Query: 469 ELYHLVNRLYHHCSYG 516
           +++  V RLY     G
Sbjct: 149 KMFLTVTRLYFSAEEG 164


>sp|Q8GXG1|ASPG2_ARATH Probable isoaspartyl peptidase/L-asparaginase
           2 OS=Arabidopsis thaliana GN=At3g16150 PE=2 SV=2
          Length = 325

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 232 GRINFEGRGKCASNLSIS*IFTRIVGRVGDAP 137
           G +  +G+G CA+  S   +  +++GR+GD+P
Sbjct: 197 GCVVVDGKGHCAAGTSTGGLMNKMMGRIGDSP 228


>sp|P13486|Y4066_RHIME Uncharacterized protein RA0666 OS=Rhizobium
           meliloti GN=RA0666 PE=4 SV=1
          Length = 151

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 647 QKPNWWPPGILKPI 606
           +KPNWW PG LKP+
Sbjct: 108 KKPNWWEPGGLKPV 121


>sp|Q2KI58|ZN181_BOVIN Zinc finger protein 181 OS=Bos taurus
           GN=ZNF181 PE=2 SV=1
          Length = 570

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 228 RPYACRRTDERTLLACSENATAGKRPFAISRRFDCNR 338
           +PY CR   +     CS + T  +R  AI ++F+CN+
Sbjct: 374 KPYECRECGKA--FCCSSHLTRHQRIHAIEKQFECNK 408


>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog
            OS=Drosophila pseudoobscura pseudoobscura GN=GA14078 PE=3
            SV=2
          Length = 1774

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 205  CLYLQSLYDLMHAEEQMRGHCLPVLKMPQQGRDLLQSADDLIAIESLEYY 354
            C+ LQ L  + H  E +R  CL  L+ PQ G+ L++   DL   +S   Y
Sbjct: 1466 CISLQRLPQISHVAEALR--CLEQLERPQHGQLLVELQHDLQRRQSYLQY 1513


>sp|P15552|NU5M_STRPU NADH-ubiquinone oxidoreductase chain 5
           OS=Strongylocentrotus purpuratus GN=ND5 PE=3 SV=1
          Length = 637

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 385 SLNFAYYEQFLICKETRILLTWCLLQFQELY 477
           SLNF Y + FL+     +++TW +++F   Y
Sbjct: 109 SLNFIYDQYFLVFLSVALIVTWSIMEFSFYY 139


>sp|O73742|COE3_XENLA Transcription factor COE3 OS=Xenopus laevis
           GN=coe3 PE=2 SV=2
          Length = 598

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
 Frame = -1

Query: 173 IHKNSRQG----------GGCSVFIQNLAYILTSTMSPSCSWTYGGAT 60
           +H NS+ G          G    +++N+A      +SPS  WT GGAT
Sbjct: 234 VHNNSKHGRRARRLDPSEGTAPSYLENVATPCIKAISPSEGWTTGGAT 281
tr_hit_id Q6Z8E2
Definition tr|Q6Z8E2|Q6Z8E2_ORYSJ Os02g0699400 protein OS=Oryza sativa subsp. japonica
Align length 38
Score (bit) 48.9
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955668|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_L13, 5'
         (692 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6Z8E2|Q6Z8E2_ORYSJ Os02g0699400 protein OS=Oryza sativa subs...    49   3e-04
tr|B8AH77|B8AH77_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A3AAE9|A3AAE9_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A9RLB5|A9RLB5_PHYPA Predicted protein OS=Physcomitrella paten...    47   0.001
tr|A7PBD6|A7PBD6_VITVI Chromosome chr16 scaffold_10, whole genom...    47   0.002
tr|A5BV44|A5BV44_VITVI Putative uncharacterized protein OS=Vitis...    47   0.002
tr|B8C6F9|B8C6F9_THAPS Predicted protein OS=Thalassiosira pseudo...    35   5.9  

>tr|Q6Z8E2|Q6Z8E2_ORYSJ Os02g0699400 protein OS=Oryza sativa subsp.
           japonica GN=P0459B01.26 PE=4 SV=1
          Length = 772

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +1

Query: 1   AADAAWKMGMEGTFIFVNSQVAPPYVQLHDGDIVEVRM 114
           AADAA +MG+EG  ++VN Q+  P  +L DGDIVEVRM
Sbjct: 735 AADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 772


>tr|B8AH77|B8AH77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08580 PE=4 SV=1
          Length = 847

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +1

Query: 1   AADAAWKMGMEGTFIFVNSQVAPPYVQLHDGDIVEVRM 114
           AADAA +MG+EG  ++VN Q+  P  +L DGDIVEVRM
Sbjct: 810 AADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 847


>tr|A3AAE9|A3AAE9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007771 PE=4 SV=1
          Length = 748

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +1

Query: 1   AADAAWKMGMEGTFIFVNSQVAPPYVQLHDGDIVEVRM 114
           AADAA +MG+EG  ++VN Q+  P  +L DGDIVEVRM
Sbjct: 711 AADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 748


>tr|A9RLB5|A9RLB5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_116207 PE=4 SV=1
          Length = 667

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +1

Query: 1   AADAAWKMGMEGTFIFVNSQVAPPYVQLHDGDIVEVR 111
           AAD A +MGM+G  +F+N Q A P+ +L DGD+VE R
Sbjct: 625 AADLARRMGMDGEIVFINHQAALPHTKLRDGDLVETR 661


>tr|A7PBD6|A7PBD6_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014050001
           PE=4 SV=1
          Length = 864

 Score = 46.6 bits (109), Expect = 0.002
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +1

Query: 1   AADAAWKMGMEGTFIFVNSQVAPPYVQLHDGDIVEVRM 114
           AADAA ++G++G  + VN Q   P  QL DGD+VEVRM
Sbjct: 827 AADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVEVRM 864


>tr|A5BV44|A5BV44_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020261 PE=4 SV=1
          Length = 378

 Score = 46.6 bits (109), Expect = 0.002
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +1

Query: 1   AADAAWKMGMEGTFIFVNSQVAPPYVQLHDGDIVEVRM 114
           AADAA ++G++G  + VN Q   P  QL DGD+VEVRM
Sbjct: 341 AADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVEVRM 378


>tr|B8C6F9|B8C6F9_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_23675 PE=4 SV=1
          Length = 746

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -1

Query: 251 CSSACIRSYKL*R*RQMCLQSFNQLNIHKNSRQGGGCSVFIQNLAYILTSTMSPSC---- 84
           C   C  S +L R  Q   ++ +   I +N+ +GGGC    QN  Y +T  +SP+     
Sbjct: 300 CHYDCYES-QLERTMQSVFEAADMKLIVQNAGEGGGCGDSHQNQVYCITHNISPNADIIH 358

Query: 83  -SWTY 72
            SWTY
Sbjct: 359 YSWTY 363