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NBDC - LSDB Archive
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DK955671
Clone id TST39A01NGRL0023_L16
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_L16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CACACCATTCTGTTCTGCAGTCTCTTCCTTTGGTGCTAACAAATATTCACGACTTTTTTA
TTCACGTTGCTGCAAAGGTTGAAACCCTACACCAGCATATATGGTCTAGACGCACAATTT
ACTTAGCAAATCAAAGGAAGAAAGGAGATGACAACAATCCCTTTCTGGAAGCTGATAGGC
GGGAAGTTGCAAAACGGGAAGCTGCTTCTAAGAGAGTACACCCTACTTTGCTGGCTTCAA
TGGCTAGCCAGCTTTCTACGCAGCTAGGGGGTTTGATATCTAATCCAACTTCTTGGTCAA
CTCCGTCCTCTGGTTCTTCCAGCAGTGCATCCATGCTTTTCTCTGGATCATCCTCTTTTC
CAGCCTTCAATACTGCAGGGGGACTCACCTCTACAAATGTTTCAGCATTTTCATCACCCT
CTTCTTCTTTATTTGTTTCTTCATCTGCACCTAGCGCTTCAATTTGTGGTGCCTTAGGGA
CGTCAACATCTGCTTCATTGTTTGGTTCGGGTATATCGTCTTCAATTTTTGGTTCTGGAC
CTGCAGCTGCCACTGCTCCTTCAGCATTGCCAGCCTTCTCTGGAG
■■Homology search results ■■ -
sp_hit_id P84752
Definition sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera
Align length 27
Score (bit) 45.4
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955671|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_L16, 5'
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera PE=1 ...    45   2e-04
sp|Q8CBH5|MFSD6_MOUSE Major facilitator superfamily domain-conta...    35   0.28 
sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=...    34   0.61 
sp|Q6ZSS7|MFSD6_HUMAN Major facilitator superfamily domain-conta...    33   1.1  
sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding protein ...    31   3.9  
sp|A1DWM3|MFSD6_PIG Major facilitator superfamily domain-contain...    31   5.2  
sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1 OS=Caenor...    30   6.7  
sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding protein ...    30   6.7  

>sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera PE=1
           SV=1
          Length = 361

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +3

Query: 33  VLTNIHDFFIHVAAKVETLHQHIWSRR 113
           V++N+HDFF+HVAAKVE++HQ+I S R
Sbjct: 80  VMSNVHDFFVHVAAKVESIHQYIESMR 106


>sp|Q8CBH5|MFSD6_MOUSE Major facilitator superfamily
           domain-containing protein 6 OS=Mus musculus GN=Mfsd6
           PE=2 SV=1
          Length = 775

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +1

Query: 145 EMTTIPFWKLIGGKLQNGKLLLREYTLLCWLQWLASFLRS*GV*YLIQLLGQLRPLVLPA 324
           E  + PFW ++  + + GK++L  ++LLCW+      L + G+ ++     +  P + P 
Sbjct: 115 EFCSAPFWGVVADRFRKGKIVLL-FSLLCWV------LFNLGIGFVKPATLRCLPKIPPT 167

Query: 325 VHPCFSLDHPL 357
            HP  ++ HP+
Sbjct: 168 AHPT-NVSHPV 177


>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus
           GN=Nupl1 PE=1 SV=1
          Length = 585

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +3

Query: 6   HSVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRRE 185
           H   Q L + +  I+  F+ +AA+++++H+++   +  YL+ ++    D     EA R E
Sbjct: 365 HITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVFEARRTE 424

Query: 186 VAKREAASK-RVHPTLLASMASQLSTQLGGLI 278
             K + A +    PT  ++M +  +  +   +
Sbjct: 425 AKKWQNAPRVTTGPTPFSTMPNAAAVAMAATL 456


>sp|Q6ZSS7|MFSD6_HUMAN Major facilitator superfamily
           domain-containing protein 6 OS=Homo sapiens GN=MFSD6
           PE=1 SV=2
          Length = 791

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +1

Query: 145 EMTTIPFWKLIGGKLQNGKLLLREYTLLCWLQWLASFLRS*GV*YLIQLLGQLRPLVLPA 324
           E  + PFW ++  + + GK++L  ++LLCW+      L + G+ ++     +  P + P 
Sbjct: 114 EFCSAPFWGVVADRFKKGKIVLL-FSLLCWV------LFNLGIGFVKPATLRCVPKIRPT 166

Query: 325 VHP 333
            HP
Sbjct: 167 THP 169


>sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding protein
           engD OS=Pasteurella multocida GN=engD PE=3 SV=3
          Length = 363

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +3

Query: 114 TIYLANQRKKGDDNNPFLEADRREVAKREAA 206
           T+Y+AN  + G +NNP+L+   RE+A++E A
Sbjct: 202 TMYIANVNEDGFENNPYLDR-VREIAEKEGA 231


>sp|A1DWM3|MFSD6_PIG Major facilitator superfamily domain-containing
           protein 6 OS=Sus scrofa GN=MFSD6 PE=2 SV=1
          Length = 798

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 145 EMTTIPFWKLIGGKLQNGKLLLREYTLLCWL 237
           E  + PFW ++  + + GK++L  ++LLCW+
Sbjct: 115 EFCSAPFWGVVADRFKKGKVVLL-FSLLCWV 144


>sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1
            OS=Caenorhabditis elegans GN=rpm-1 PE=1 SV=1
          Length = 3766

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = -3

Query: 370  LKAGKEDDPEKSMDALLEEPEDGVDQEVGLDIKPPSCVESWLAIEASKVGCTLLEAASRF 191
            +K G   DP   ++ ++  P  G DQ   L+   PS +     +  S        AA R 
Sbjct: 2652 MKLGYSSDPGPKVNVIMSPPNQGADQSASLNRPGPSAINEPAEVLQSP------SAALRT 2705

Query: 190  ATSRLSASRKGLLSSP 143
              S  + S   LL  P
Sbjct: 2706 LFSNTNPSTSALLKRP 2721


>sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding protein
           engD OS=Haemophilus influenzae GN=engD PE=1 SV=2
          Length = 363

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 114 TIYLANQRKKGDDNNPFLEADRREVAKREAA 206
           T+Y+AN  + G +NNP+L+   RE+A +E A
Sbjct: 202 TMYIANVNEDGFENNPYLDR-VREIAAKEGA 231
tr_hit_id A7R6Z0
Definition tr|A7R6Z0|A7R6Z0_VITVI Chromosome undetermined scaffold_1496, whole genome shotgun sequence OS=Vitis vinifera
Align length 89
Score (bit) 122.0
E-value 1.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955671|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_L16, 5'
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R6Z0|A7R6Z0_VITVI Chromosome undetermined scaffold_1496, wh...   122   1e-26
tr|A7R450|A7R450_VITVI Chromosome undetermined scaffold_618, who...   122   1e-26
tr|Q8RWH9|Q8RWH9_ARATH Putative uncharacterized protein At4g3713...   121   2e-26
tr|O23173|O23173_ARATH Nucleoporin-like protein OS=Arabidopsis t...   121   2e-26
tr|A7R3X8|A7R3X8_VITVI Chromosome undetermined scaffold_585, who...   119   9e-26
tr|Q67UZ2|Q67UZ2_ORYSJ Os09g0453500 protein OS=Oryza sativa subs...   103   5e-21
tr|B8BCJ8|B8BCJ8_ORYSI Putative uncharacterized protein OS=Oryza...   103   5e-21
tr|A3BZH2|A3BZH2_ORYSJ Putative uncharacterized protein OS=Oryza...   103   5e-21
tr|B6TCC2|B6TCC2_MAIZE Nucleoporin p58/p45 OS=Zea mays PE=2 SV=1      101   3e-20
tr|A9SFH0|A9SFH0_PHYPA Predicted protein OS=Physcomitrella paten...   101   3e-20
tr|B4FHB0|B4FHB0_MAIZE Nucleoporin p58/p45 OS=Zea mays PE=2 SV=1       98   4e-19
tr|Q7Y0D7|Q7Y0D7_ORYSJ Putative uncharacterized protein OSJNBa00...    80   6e-14
tr|Q0DN98|Q0DN98_ORYSJ Os03g0765400 protein (Fragment) OS=Oryza ...    80   6e-14
tr|B8AKI5|B8AKI5_ORYSI Putative uncharacterized protein OS=Oryza...    80   6e-14
tr|Q10EN1|Q10EN1_ORYSJ Nucleoporin, putative, expressed OS=Oryza...    72   3e-11
tr|A3AN02|A3AN02_ORYSJ Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|A8JBB1|A8JBB1_CHLRE Putative uncharacterized protein OS=Chlam...    47   0.001
tr|Q6CDQ7|Q6CDQ7_YARLI YALI0B22066p OS=Yarrowia lipolytica GN=YA...    36   1.8  
tr|Q7PPK8|Q7PPK8_ANOGA AGAP008772-PA OS=Anopheles gambiae GN=AGA...    34   5.2  
tr|Q6NAY7|Q6NAY7_RHOPA Possible protease SohB OS=Rhodopseudomona...    33   9.0  
tr|B3QHL7|B3QHL7_RHOPT Peptidase S49 OS=Rhodopseudomonas palustr...    33   9.0  
tr|A5WGQ8|A5WGQ8_PSYWF GTP-binding protein YchF OS=Psychrobacter...    33   9.0  
tr|B8K9T3|B8K9T3_VIBPA Autoinducer 2 sensor kinase/phosphatase L...    33   9.0  

>tr|A7R6Z0|A7R6Z0_VITVI Chromosome undetermined scaffold_1496, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008483001 PE=4 SV=1
          Length = 343

 Score =  122 bits (307), Expect = 1e-26
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 9   SVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREV 188
           S+LQSLP V++N+HDFF+HVAAKVE++HQ+I S +  YLA+QR++GD N+PFLEADRRE 
Sbjct: 57  SLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKMAYLADQRRRGDGNDPFLEADRRET 116

Query: 189 AKREAASKRVHPTLLASMASQLSTQLGGL 275
           AK+EAASKRVHPTL     S  STQ+ GL
Sbjct: 117 AKQEAASKRVHPTLHLPAVSPPSTQVAGL 145


>tr|A7R450|A7R450_VITVI Chromosome undetermined scaffold_618, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004168001 PE=4 SV=1
          Length = 431

 Score =  122 bits (307), Expect = 1e-26
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 9   SVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREV 188
           S+LQSLP V++N+HDFF+HVAAKVE++HQ+I S +  YLA+QR++GD N+PFLEADRRE 
Sbjct: 273 SLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKMAYLADQRRRGDGNDPFLEADRRET 332

Query: 189 AKREAASKRVHPTLLASMASQLSTQLGGL 275
           AK+EAASKRVHPTL     S  STQ+ GL
Sbjct: 333 AKQEAASKRVHPTLHLPAVSPPSTQVAGL 361


>tr|Q8RWH9|Q8RWH9_ARATH Putative uncharacterized protein At4g37130
           (At4g37130) OS=Arabidopsis thaliana GN=At4g37130 PE=2
           SV=1
          Length = 513

 Score =  121 bits (304), Expect = 2e-26
 Identities = 59/95 (62%), Positives = 81/95 (85%), Gaps = 3/95 (3%)
 Frame = +3

Query: 3   HHSVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRR 182
           H S+L+SLP V++N+HDFF+HVAAKVE++HQ+I S RT YLA+QR++G+ ++PFLEADRR
Sbjct: 297 HASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHDPFLEADRR 356

Query: 183 EVAKREAASKRVHPTL---LASMASQLSTQLGGLI 278
           E AK+EAA+KRVHPTL    ++ ++Q STQ+ GLI
Sbjct: 357 ETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLI 391


>tr|O23173|O23173_ARATH Nucleoporin-like protein OS=Arabidopsis
           thaliana GN=C7A10.230 PE=4 SV=2
          Length = 595

 Score =  121 bits (304), Expect = 2e-26
 Identities = 59/95 (62%), Positives = 81/95 (85%), Gaps = 3/95 (3%)
 Frame = +3

Query: 3   HHSVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRR 182
           H S+L+SLP V++N+HDFF+HVAAKVE++HQ+I S RT YLA+QR++G+ ++PFLEADRR
Sbjct: 297 HASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHDPFLEADRR 356

Query: 183 EVAKREAASKRVHPTL---LASMASQLSTQLGGLI 278
           E AK+EAA+KRVHPTL    ++ ++Q STQ+ GLI
Sbjct: 357 ETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLI 391


>tr|A7R3X8|A7R3X8_VITVI Chromosome undetermined scaffold_585, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004031001 PE=4 SV=1
          Length = 558

 Score =  119 bits (299), Expect = 9e-26
 Identities = 58/89 (65%), Positives = 73/89 (82%)
 Frame = +3

Query: 9   SVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREV 188
           S+LQSLP V++N+HDFF+HVAAKVE++HQ+I S +  YLA+QR++GD N+PFLEADRRE 
Sbjct: 272 SLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKMAYLADQRRRGDGNDPFLEADRRET 331

Query: 189 AKREAASKRVHPTLLASMASQLSTQLGGL 275
           AK+EAASK VHPTL     S  STQ+ GL
Sbjct: 332 AKQEAASKWVHPTLHLPAVSPPSTQVAGL 360


>tr|Q67UZ2|Q67UZ2_ORYSJ Os09g0453500 protein OS=Oryza sativa subsp.
           japonica GN=P0488D02.24 PE=2 SV=1
          Length = 467

 Score =  103 bits (258), Expect = 5e-21
 Identities = 49/88 (55%), Positives = 69/88 (78%)
 Frame = +3

Query: 15  LQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREVAK 194
           L+SLP V++N+HD+FI+VA+KVE LHQ++ S +T YL  QR+ G+ N+PFLEA+RRE AK
Sbjct: 255 LESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAK 314

Query: 195 REAASKRVHPTLLASMASQLSTQLGGLI 278
           +EAA++RVHPTL      Q +TQ+ G +
Sbjct: 315 QEAAARRVHPTLHLPAPVQPTTQIAGTV 342


>tr|B8BCJ8|B8BCJ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31617 PE=4 SV=1
          Length = 470

 Score =  103 bits (258), Expect = 5e-21
 Identities = 49/88 (55%), Positives = 69/88 (78%)
 Frame = +3

Query: 15  LQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREVAK 194
           L+SLP V++N+HD+FI+VA+KVE LHQ++ S +T YL  QR+ G+ N+PFLEA+RRE AK
Sbjct: 258 LESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAK 317

Query: 195 REAASKRVHPTLLASMASQLSTQLGGLI 278
           +EAA++RVHPTL      Q +TQ+ G +
Sbjct: 318 QEAAARRVHPTLHLPAPVQPTTQIAGTV 345


>tr|A3BZH2|A3BZH2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028444 PE=4 SV=1
          Length = 526

 Score =  103 bits (258), Expect = 5e-21
 Identities = 49/88 (55%), Positives = 69/88 (78%)
 Frame = +3

Query: 15  LQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREVAK 194
           L+SLP V++N+HD+FI+VA+KVE LHQ++ S +T YL  QR+ G+ N+PFLEA+RRE AK
Sbjct: 255 LESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNANDPFLEANRREAAK 314

Query: 195 REAASKRVHPTLLASMASQLSTQLGGLI 278
           +EAA++RVHPTL      Q +TQ+ G +
Sbjct: 315 QEAAARRVHPTLHLPAPVQPTTQIAGTV 342


>tr|B6TCC2|B6TCC2_MAIZE Nucleoporin p58/p45 OS=Zea mays PE=2 SV=1
          Length = 469

 Score =  101 bits (252), Expect = 3e-20
 Identities = 47/84 (55%), Positives = 67/84 (79%)
 Frame = +3

Query: 15  LQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREVAK 194
           L+SLP V++N+HD+FI+VA+KVE LHQH+ S +T YL  QR+ G+ ++PFLEA+RRE AK
Sbjct: 263 LESLPKVMSNVHDYFIYVASKVENLHQHVESMKTEYLNEQRRTGNGSDPFLEANRREAAK 322

Query: 195 REAASKRVHPTLLASMASQLSTQL 266
           +EAA++RVHPTL     +Q + Q+
Sbjct: 323 QEAAARRVHPTLHLPTPAQPTAQI 346


>tr|A9SFH0|A9SFH0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229291 PE=4 SV=1
          Length = 388

 Score =  101 bits (252), Expect = 3e-20
 Identities = 47/75 (62%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
 Frame = +3

Query: 9   SVLQSLPLVLTNIHDFFIHVAAKVETLHQHIWSRRTIYLANQRKKGDDNNPFLEADRREV 188
           S+LQSLP V+TN+HDFFIHVAA+VE LHQH  + RT +L  + ++GDD++PF+EA+RR +
Sbjct: 204 SLLQSLPSVMTNVHDFFIHVAAEVEELHQHTGAMRTAFLQERHRRGDDSDPFVEAERRAI 263

Query: 189 AKREAASKR-VHPTL 230
           A+R+AA+KR VHPTL
Sbjct: 264 AQRDAAAKRIVHPTL 278