DK955679 |
Clone id |
TST39A01NGRL0023_L24 |
Library |
TST39 |
Length |
625 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_L24. 5' end sequence. |
Accession |
DK955679 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CTAATGAGCACGTAATTCTACAGGATGGCCTGGAAGTAACATGAACTTGCTGAGGCGGGT AGAGGCAACCCGCAAAGTTGTTGCCAGCAGGAGTCCGACGAGCTTTGTCCAAACCCTACC GCAGCAGCAATATCACAAACAAGAAACGCCAGCAGAGGAGGGCAACATAACCAGACAGAA CTTCTGGGGTTCTCTAGAGAGCTTCAAGGCGCATTTGCGCTCTGCTGACTTCGTTGGTTT CGACCTTGAGCTGAGCGGCGTCCACAGCGTCCCCACCTTCGACCCCTCATGCTCAGACCT CGGATCGCCCCTTCATCACTCCTACCGCCGCATCAAGCACCTAGCTGAGAAGTTTACCGT CTTCCAAGTTGGCTTTGCCCTCTTCCACCTTGATCCTGTCTGTAATCGGTTTCTTGCTTA CCCGTACAATTTTTATGTTTTTCCCCGGAATGACCTCCACCTTGGTCTGCCTGCCACATC ATTGTCATGTGAGGCTTCTGCGCTTGAGTTTCTAGCATCCCATGGGTTCGACTTCAATCT GTGCATACAGGATGGTATATCCTATTTATCAAAGACGCAAGAAGTCGAAGCAAGGGCACT GCTGGTCAATGAGCTCTCTCCTTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LG26 |
Definition |
sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana |
Align length |
143 |
Score (bit) |
115.0 |
E-value |
1.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SGS0 |
Definition |
tr|A9SGS0|A9SGS0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
147 |
Score (bit) |
137.0 |
E-value |
7.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955679|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_L24, 5' (625 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SGS0|A9SGS0_PHYPA Predicted protein (Fragment) OS=Physcomit... 137 7e-31 tr|A7Q994|A7Q994_VITVI Chromosome chr19 scaffold_66, whole genom... 120 5e-26 tr|A5BKV2|A5BKV2_VITVI Putative uncharacterized protein OS=Vitis... 120 7e-26 tr|Q0J5E9|Q0J5E9_ORYSJ Os08g0440200 protein OS=Oryza sativa subs... 103 8e-21 tr|B8BB29|B8BB29_ORYSI Putative uncharacterized protein OS=Oryza... 103 1e-20 tr|Q9LSV7|Q9LSV7_ARATH Gb|AAD21483.1 OS=Arabidopsis thaliana PE=... 102 2e-20 tr|Q8W4C3|Q8W4C3_ARATH Putative uncharacterized protein At3g2543... 102 2e-20 tr|A3BTI7|A3BTI7_ORYSJ Putative uncharacterized protein OS=Oryza... 89 3e-16 tr|B2RCB3|B2RCB3_HUMAN Poly(A)-specific ribonuclease (Deadenylat... 87 8e-16 tr|Q07G83|Q07G83_XENTR Poly(A)-specific ribonuclease (Deadenylat... 85 3e-15 tr|B5DFR2|B5DFR2_XENTR Putative uncharacterized protein (Fragmen... 85 3e-15 tr|A7S1J3|A7S1J3_NEMVE Predicted protein OS=Nematostella vectens... 85 4e-15 tr|Q4SMK4|Q4SMK4_TETNG Chromosome 18 SCAF14547, whole genome sho... 84 7e-15 tr|A7T0T2|A7T0T2_NEMVE Predicted protein (Fragment) OS=Nematoste... 83 1e-14 tr|Q3TUQ8|Q3TUQ8_MOUSE Putative uncharacterized protein OS=Mus m... 82 2e-14 tr|B6PVV9|B6PVV9_BRAFL Putative uncharacterized protein (Fragmen... 81 6e-14 tr|B6MXL9|B6MXL9_BRAFL Putative uncharacterized protein OS=Branc... 81 6e-14 tr|A7R5W1|A7R5W1_VITVI Chromosome undetermined scaffold_1075, wh... 79 2e-13 tr|Q01KE8|Q01KE8_ORYSA OSIGBa0115M15.11 protein OS=Oryza sativa ... 78 5e-13 tr|B3RMU1|B3RMU1_TRIAD Putative uncharacterized protein OS=Trich... 77 1e-12 tr|Q01IS2|Q01IS2_ORYSA OSIGBa0128P10.2 protein OS=Oryza sativa G... 75 4e-12 tr|A6SRK8|A6SRK8_BOTFB Putative uncharacterized protein OS=Botry... 74 7e-12 tr|A4HZK3|A4HZK3_LEIIN Putative uncharacterized protein OS=Leish... 74 9e-12 tr|B2RXZ1|B2RXZ1_MOUSE Poly(A)-specific ribonuclease (PARN)-like... 73 2e-11 tr|A9S7Y3|A9S7Y3_PHYPA Predicted protein OS=Physcomitrella paten... 73 2e-11 tr|Q95K76|Q95K76_MACFA Putative uncharacterized protein OS=Macac... 73 2e-11 tr|Q17L86|Q17L86_AEDAE Poly(A)-specific ribonuclease (Deadenylat... 73 2e-11 tr|Q4KLL1|Q4KLL1_RAT Poly(A)-specific ribonuclease (PARN)-like d... 72 2e-11 tr|Q4QBB3|Q4QBB3_LEIMA Putative uncharacterized protein OS=Leish... 72 2e-11 tr|A7S4R7|A7S4R7_NEMVE Predicted protein OS=Nematostella vectens... 72 2e-11
>tr|A9SGS0|A9SGS0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_13048 PE=4 SV=1 Length = 487
Score = 137 bits (344), Expect = 7e-31 Identities = 74/147 (50%), Positives = 93/147 (63%) Frame = +2
Query: 164 NITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSYRRIKHL 343 N+TR+NF SLE + L ADFV DLE++GV S T +L S Y+ +KH Sbjct: 9 NVTRRNFVESLEQLRGQLAGADFVAVDLEMTGVES--TKWRRNLELDS-YETRYQNLKHS 65
Query: 344 AEKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFLASH 523 AEKF V+Q G F D N+++AYPYNF++FPRN+L L LPA S + ++LEFL H Sbjct: 66 AEKFAVWQCGVCPFKWDEAHNKWVAYPYNFFIFPRNELQLELPARSFFAQTTSLEFLTKH 125
Query: 524 GFDFNLCIQDGISYLSKTQEVEARALL 604 FDFN CI DGISYLS QE AR L+ Sbjct: 126 RFDFNACIYDGISYLSHEQEAVARVLM 152
>tr|A7Q994|A7Q994_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033386001 PE=4 SV=1 Length = 534
Score = 120 bits (302), Expect = 5e-26 Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 3/153 (1%) Frame = +2
Query: 164 NITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVP---TFDPSCSDLGSPLHHSYRRI 334 N+T+ NF SL + H+R ADFV DLE++GV S P +F+ D+ Y ++ Sbjct: 42 NVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDV------QYLKV 95
Query: 335 KHLAEKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFL 514 K AEKF V Q G F D + F+A+P+NFYVFPR +L + P+ C+ ++++FL Sbjct: 96 KDSAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFL 155
Query: 515 ASHGFDFNLCIQDGISYLSKTQEVEARALLVNE 613 A + FDFN CI +GISYLS+ QE E L +E Sbjct: 156 AKYQFDFNACIYEGISYLSREQENEMLRCLNSE 188
>tr|A5BKV2|A5BKV2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007764 PE=4 SV=1 Length = 720
Score = 120 bits (301), Expect = 7e-26 Identities = 64/153 (41%), Positives = 92/153 (60%), Gaps = 3/153 (1%) Frame = +2
Query: 164 NITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVP---TFDPSCSDLGSPLHHSYRRI 334 N+T+ NF SL + H+R ADFV DLE++GV S P +F+ D+ Y ++ Sbjct: 42 NVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDV------QYLKV 95
Query: 335 KHLAEKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFL 514 K AEKF V Q G F D + F+A+P+NFYVFPR +L + P+ C+ ++++FL Sbjct: 96 KDSAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFL 155
Query: 515 ASHGFDFNLCIQDGISYLSKTQEVEARALLVNE 613 A + FDFN CI +G+SYLS+ QE E L +E Sbjct: 156 AKYQFDFNACIYEGVSYLSREQENEMLRCLNSE 188
>tr|Q0J5E9|Q0J5E9_ORYSJ Os08g0440200 protein OS=Oryza sativa subsp. japonica GN=Os08g0440200 PE=4 SV=1 Length = 291
Score = 103 bits (257), Expect = 8e-21 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Frame = +2
Query: 146 TPAEEGNITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSY 325 T + +T++NF +++ AH+ + D+V + +G PT + +P +Y Sbjct: 9 TASAARQVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA---PTGWRRALPVDTP-ETAY 64
Query: 326 RRIKHLAEKFTVFQVGFALFHLDPVC-NRFLAYPYNFYVFPRNDLHLGLPATSLSCEASA 502 + K AE F F +D + +AYPYNF++FPR++L LG+PA S SC++S Sbjct: 65 LKAKLAAESFQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSY 124
Query: 503 LEFLASHGFDFNLCIQDGISYLSKTQEVEAR 595 L +A GFDFN+CI DGISYLS+ QE AR Sbjct: 125 LSSMAHSGFDFNMCIYDGISYLSRAQESLAR 155
>tr|B8BB29|B8BB29_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29373 PE=4 SV=1 Length = 602
Score = 103 bits (256), Expect = 1e-20 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 1/144 (0%) Frame = +2
Query: 167 ITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSYRRIKHLA 346 +T++NF +++ AH+ + D+V + +G PT + +P +Y + K A Sbjct: 17 VTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA---PTGWRRALPVDTP-ETAYLKAKLAA 72
Query: 347 EKFTVFQVGFALFHLDPVC-NRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFLASH 523 E F F +D + +AYPYNF++FPR++L LG+PA S SC++S L +A Sbjct: 73 ESFQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHS 132
Query: 524 GFDFNLCIQDGISYLSKTQEVEAR 595 GFDFN+CI DGISYLS+ QE AR Sbjct: 133 GFDFNMCIYDGISYLSRAQESLAR 156
>tr|Q9LSV7|Q9LSV7_ARATH Gb|AAD21483.1 OS=Arabidopsis thaliana PE=4 SV=1 Length = 1115
Score = 102 bits (253), Expect = 2e-20 Identities = 52/150 (34%), Positives = 86/150 (57%) Frame = +2
Query: 167 ITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSYRRIKHLA 346 + + NF +L+ + + S+DF+ L+ +G ++ S D SY + K+ A Sbjct: 29 VKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQT---SYLKAKYAA 85
Query: 347 EKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFLASHG 526 E++ + Q F L ++ +PYNF++FPR++L G+P+ S SC+AS L +A G Sbjct: 86 ERYQILQFALCPFSLQG--SKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREG 143
Query: 527 FDFNLCIQDGISYLSKTQEVEARALLVNEL 616 FDFN+CI +GISYLS+ QE ++ L N + Sbjct: 144 FDFNICIYEGISYLSRAQESASKFLSENPI 173
>tr|Q8W4C3|Q8W4C3_ARATH Putative uncharacterized protein At3g25430; MWL2.4 (At3g25430) OS=Arabidopsis thaliana GN=At3g25430/MWL2.4 PE=2 SV=1 Length = 618
Score = 102 bits (253), Expect = 2e-20 Identities = 52/150 (34%), Positives = 86/150 (57%) Frame = +2
Query: 167 ITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSYRRIKHLA 346 + + NF +L+ + + S+DF+ L+ +G ++ S D SY + K+ A Sbjct: 29 VKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQT---SYLKAKYAA 85
Query: 347 EKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFLASHG 526 E++ + Q F L ++ +PYNF++FPR++L G+P+ S SC+AS L +A G Sbjct: 86 ERYQILQFALCPFSLQG--SKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREG 143
Query: 527 FDFNLCIQDGISYLSKTQEVEARALLVNEL 616 FDFN+CI +GISYLS+ QE ++ L N + Sbjct: 144 FDFNICIYEGISYLSRAQESASKFLSENPI 173
>tr|A3BTI7|A3BTI7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_026359 PE=4 SV=1 Length = 540
Score = 88.6 bits (218), Expect = 3e-16 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 1/138 (0%) Frame = +2
Query: 146 TPAEEGNITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSY 325 T + +T++NF +++ AH+ + D+V + +G PT + +P +Y Sbjct: 9 TASAARQVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA---PTGWRRALPVDTP-ETAY 64
Query: 326 RRIKHLAEKFTVFQVGFALFHLDPVC-NRFLAYPYNFYVFPRNDLHLGLPATSLSCEASA 502 + K AE F F +D + +AYPYNF++FPR++L LG+PA S SC++S Sbjct: 65 LKAKLAAESFQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSY 124
Query: 503 LEFLASHGFDFNLCIQDG 556 L +A GFDFN+CI DG Sbjct: 125 LSSMAHSGFDFNMCIYDG 142
>tr|B2RCB3|B2RCB3_HUMAN Poly(A)-specific ribonuclease (Deadenylation nuclease), isoform CRA_a OS=Homo sapiens GN=PARN PE=2 SV=1 Length = 639
Score = 87.0 bits (214), Expect = 8e-16 Identities = 46/143 (32%), Positives = 75/143 (52%) Frame = +2
Query: 167 ITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSYRRIKHLA 346 I R NF +L + ADF D E SG+ P+ + +P Y+++K + Sbjct: 3 IIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTP-EERYQKLKKHS 61
Query: 347 EKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFLASHG 526 F +FQ G F D ++++ +NFYVFP+ + P C++S+++FLAS G Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 527 FDFNLCIQDGISYLSKTQEVEAR 595 FDFN ++GI YL++ +E + R Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLR 143
>tr|Q07G83|Q07G83_XENTR Poly(A)-specific ribonuclease (Deadenylation nuclease) (Fragment) OS=Xenopus tropicalis GN=TEgg040n07.1-001 PE=2 SV=1 Length = 519
Score = 85.1 bits (209), Expect = 3e-15 Identities = 44/143 (30%), Positives = 76/143 (53%) Frame = +2
Query: 167 ITRQNFWGSLESFKAHLRSADFVGFDLELSGVHSVPTFDPSCSDLGSPLHHSYRRIKHLA 346 +TR NF +L + ADF+ D E SG+ P+ + +P Y ++K + Sbjct: 3 MTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTP-EERYTKLKKHS 61
Query: 347 EKFTVFQVGFALFHLDPVCNRFLAYPYNFYVFPRNDLHLGLPATSLSCEASALEFLASHG 526 +F +FQ G F+ D ++ +NFY+FP+ + P C++S+++FLA+ G Sbjct: 62 MEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQG 120
Query: 527 FDFNLCIQDGISYLSKTQEVEAR 595 FDFN ++GI YL++ +E + R Sbjct: 121 FDFNKVFRNGIPYLNQEEEKQLR 143
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