DK955685 |
Clone id |
TST39A01NGRL0023_M06 |
Library |
TST39 |
Length |
388 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_M06. 5' end sequence. |
Accession |
DK955685 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2388Contig1 |
Sequence |
ATGCTTTCAATATCCAATCCAAAGATAAACGTCATGGACACACTGAGCAGGCTTAGCCAT GATAGCGATGTTGAAGTTGCCATGACAGCAATAGTGGGGTTTGGTCTGATTGGAGCAGGA ACCAACAATGCTCGTATTGCTGGCATGCTGCGAAATTTGTCAAGTTATTATTACAAAGAT CCCAGTCTACTCTTTTGTGTCCGAATTGCGCAAGGTCTCGTGCATATGGGGAAGGGGTTG ATGACTCTTAACCCTTACCACTCGGATAGGTTTTTGCTCTCCAGTGTTGCCCTAACGGGG CTAATAACAGTCTTGCATGGATGTTTGGACATGAAGGCTATTATACTCCGGAAAGTATCA CCTATGTGCTGTACTTCTTGACATTTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q4FZT9 |
Definition |
sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus |
Align length |
118 |
Score (bit) |
147.0 |
E-value |
2.0e-35 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LRR7 |
Definition |
tr|B8LRR7|B8LRR7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
118 |
Score (bit) |
202.0 |
E-value |
7.0e-51 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955685|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_M06, 5' (388 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LRR7|B8LRR7_PICSI Putative uncharacterized protein OS=Picea... 202 7e-51 tr|A9RDZ2|A9RDZ2_PHYPA Predicted protein OS=Physcomitrella paten... 200 3e-50 tr|A9U198|A9U198_PHYPA Predicted protein OS=Physcomitrella paten... 198 1e-49 tr|A7PJ89|A7PJ89_VITVI Chromosome chr12 scaffold_18, whole genom... 196 4e-49 tr|Q8W3N6|Q8W3N6_ORYSJ Os06g0699900 protein (Fragment) OS=Oryza ... 194 1e-48 tr|Q6K2Q1|Q6K2Q1_ORYSJ Os09g0326800 protein OS=Oryza sativa subs... 194 1e-48 tr|Q5Z854|Q5Z854_ORYSJ Putative 26S proteasome regulatory subuni... 194 1e-48 tr|B8BEG9|B8BEG9_ORYSI Putative uncharacterized protein OS=Oryza... 194 1e-48 tr|A3BXH7|A3BXH7_ORYSJ Putative uncharacterized protein OS=Oryza... 194 1e-48 tr|A3BF32|A3BF32_ORYSJ Putative uncharacterized protein OS=Oryza... 194 1e-48 tr|A2YGN8|A2YGN8_ORYSI Putative uncharacterized protein OS=Oryza... 194 1e-48 tr|Q9SIV2|Q9SIV2_ARATH 26S proteasome regulatory subunit S2 (RPN... 193 3e-48 tr|Q56ZR0|Q56ZR0_ARATH Putative 26S proteasome regulatory subuni... 193 3e-48 tr|Q6XJG8|Q6XJG8_ARATH 26S proteasome subunit RPN1b OS=Arabidops... 192 7e-48 tr|Q6Z2Z3|Q6Z2Z3_ORYSJ Os02g0146700 protein OS=Oryza sativa subs... 189 6e-47 tr|B8AHQ9|B8AHQ9_ORYSI Putative uncharacterized protein OS=Oryza... 189 6e-47 tr|A3A343|A3A343_ORYSJ Putative uncharacterized protein OS=Oryza... 189 6e-47 tr|A8J3A4|A8J3A4_CHLRE 26S proteasome regulatory subunit OS=Chla... 160 2e-38 tr|B7G2F7|B7G2F7_PHATR Regulatory proteasome non-atpase subunit ... 154 3e-36 tr|B3RL38|B3RL38_TRIAD Putative uncharacterized protein OS=Trich... 152 8e-36 tr|Q5TTS2|Q5TTS2_ANOGA AGAP002481-PA (Fragment) OS=Anopheles gam... 151 1e-35 tr|B7Q3Z3|B7Q3Z3_IXOSC 26S proteasome regulatory subunit rpn1, p... 151 1e-35 tr|Q176M6|Q176M6_AEDAE 26S proteasome regulatory subunit rpn1 OS... 151 2e-35 tr|B6LLN9|B6LLN9_BRAFL Putative uncharacterized protein OS=Branc... 150 3e-35 tr|A4S2C3|A4S2C3_OSTLU Predicted protein OS=Ostreococcus lucimar... 150 4e-35 tr|B6NSC2|B6NSC2_BRAFL Putative uncharacterized protein OS=Branc... 149 5e-35 tr|Q6PHK7|Q6PHK7_DANRE Proteasome (Prosome, macropain) 26S subun... 147 2e-34 tr|Q5ZLU4|Q5ZLU4_CHICK Putative uncharacterized protein OS=Gallu... 147 3e-34 tr|Q80V77|Q80V77_MOUSE Psmd2 protein OS=Mus musculus GN=Psmd2 PE... 147 3e-34 tr|Q3U9Y8|Q3U9Y8_MOUSE Putative uncharacterized protein OS=Mus m... 147 3e-34
>tr|B8LRR7|B8LRR7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 892
Score = 202 bits (514), Expect = 7e-51 Identities = 99/118 (83%), Positives = 108/118 (91%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +LSISNPK+NVMDTLSRLSHD+D EVAM A + GLIGAGTNNARIAGMLRNLSSYYYKD Sbjct: 675 LLSISNPKVNVMDTLSRLSHDTDSEVAMAATLALGLIGAGTNNARIAGMLRNLSSYYYKD 734
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 PSLLFCVRIAQGLVH+GKGL+TLNPYHSDRFLLS AL G+IT+LH CLDMK+IIL K Sbjct: 735 PSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIITLLHSCLDMKSIILGK 792
>tr|A9RDZ2|A9RDZ2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_174095 PE=4 SV=1 Length = 899
Score = 200 bits (509), Expect = 3e-50 Identities = 100/118 (84%), Positives = 107/118 (90%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +LSISNPKI+VMDTLSRLSHDSD EVAM+A + GLIGAGTNNARIAGMLRNLSSYYYKD Sbjct: 682 LLSISNPKISVMDTLSRLSHDSDSEVAMSATISLGLIGAGTNNARIAGMLRNLSSYYYKD 741
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 PSLLFCVRIAQGLVHMGKGL+TLNPYHSDRFLLS+VAL GLIT LH DMK+ IL K Sbjct: 742 PSLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSNVALAGLITFLHASFDMKSFILGK 799
>tr|A9U198|A9U198_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_154274 PE=4 SV=1 Length = 873
Score = 198 bits (504), Expect = 1e-49 Identities = 99/118 (83%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +LSISNPKI+VMDTLSRL+HDSD EVAM+A V GLIGAGTNNARIAGMLRNLSSYYYKD Sbjct: 657 ILSISNPKISVMDTLSRLTHDSDSEVAMSATVSLGLIGAGTNNARIAGMLRNLSSYYYKD 716
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 PSLLFCVRIAQGLVHMGKGL+TLNPYHSDRFLLS+VAL GLIT LH DMK +L K Sbjct: 717 PSLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSNVALAGLITFLHASFDMKTFVLGK 774
>tr|A7PJ89|A7PJ89_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018639001 PE=4 SV=1 Length = 241
Score = 196 bits (499), Expect = 4e-49 Identities = 95/118 (80%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDTLSRLSHD+D EVAM A++ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 27 LLCISNPKVNVMDTLSRLSHDTDTEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKE 86
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 SLLFCVRIAQGLVH+GKGL+TL PYHSDRFLLS AL G++T+LH CLDMKAIIL K Sbjct: 87 ASLLFCVRIAQGLVHLGKGLLTLAPYHSDRFLLSPSALAGIVTLLHACLDMKAIILGK 144
>tr|Q8W3N6|Q8W3N6_ORYSJ Os06g0699900 protein (Fragment) OS=Oryza sativa subsp. japonica GN=OsRPN1b PE=2 SV=1 Length = 238
Score = 194 bits (494), Expect = 1e-48 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDT+SRLSHD+D EV+M AI+ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 25 LLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKE 84
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 LFCVRIAQGLVH+GKGL+TL+PYHSDRFLLS +AL GL+TVLH CLDMK+IIL K Sbjct: 85 AGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGK 142
>tr|Q6K2Q1|Q6K2Q1_ORYSJ Os09g0326800 protein OS=Oryza sativa subsp. japonica GN=P0706E03.1 PE=2 SV=1 Length = 891
Score = 194 bits (494), Expect = 1e-48 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDT+SRLSHD+D EV+M AI+ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 678 LLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKE 737
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 LFCVRIAQGLVH+GKGL+TL+PYHSDRFLLS +AL GL+TVLH CLDMK+IIL K Sbjct: 738 AGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGK 795
>tr|Q5Z854|Q5Z854_ORYSJ Putative 26S proteasome regulatory subunit S2 OS=Oryza sativa subsp. japonica GN=P0468G03.16 PE=4 SV=1 Length = 822
Score = 194 bits (494), Expect = 1e-48 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDT+SRLSHD+D EV+M AI+ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 609 LLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKE 668
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 LFCVRIAQGLVH+GKGL+TL+PYHSDRFLLS +AL GL+TVLH CLDMK+IIL K Sbjct: 669 AGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGK 726
>tr|B8BEG9|B8BEG9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30901 PE=4 SV=1 Length = 891
Score = 194 bits (494), Expect = 1e-48 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDT+SRLSHD+D EV+M AI+ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 678 LLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKE 737
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 LFCVRIAQGLVH+GKGL+TL+PYHSDRFLLS +AL GL+TVLH CLDMK+IIL K Sbjct: 738 AGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGK 795
>tr|A3BXH7|A3BXH7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_027749 PE=4 SV=1 Length = 949
Score = 194 bits (494), Expect = 1e-48 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDT+SRLSHD+D EV+M AI+ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 736 LLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKE 795
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 LFCVRIAQGLVH+GKGL+TL+PYHSDRFLLS +AL GL+TVLH CLDMK+IIL K Sbjct: 796 AGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGK 853
>tr|A3BF32|A3BF32_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_021654 PE=4 SV=1 Length = 873
Score = 194 bits (494), Expect = 1e-48 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 1 MLSISNPKINVMDTLSRLSHDSDVEVAMTAIVGFGLIGAGTNNARIAGMLRNLSSYYYKD 180 +L ISNPK+NVMDT+SRLSHD+D EV+M AI+ GLIGAGTNNARIAGMLRNLSSYYYK+ Sbjct: 688 LLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKE 747
Query: 181 PSLLFCVRIAQGLVHMGKGLMTLNPYHSDRFLLSSVALTGLITVLHGCLDMKAIILRK 354 LFCVRIAQGLVH+GKGL+TL+PYHSDRFLLS +AL GL+TVLH CLDMK+IIL K Sbjct: 748 AGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGK 805
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