DK955688 |
Clone id |
TST39A01NGRL0023_M09 |
Library |
TST39 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_M09. 5' end sequence. |
Accession |
DK955688 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1156Contig1 |
Sequence |
GCTACTACTATTTCCCCATGGAAGAAGTTCAGGAACCTAGTTTGGAAAGGGAGCTACCAG ACGCCGTTGTTCATGCCATTCTGAGGCGGTGTGATTTTGAAGACGTCTGCCGCTCTGCTT GTGTGGATCGGCGATGGCATCTCATTGCATCAGACGATTCTGTGTGGCAGTGCCTTTGTG AGAAGGATTTTTATCTATTCCAACCTTCTGATCATCACGGAAATATCTGCCCTTCCTACA AGGAGGCTTACAAGCTCTGGTGCATGAATTTTCGTATGTATCCACGGTCTTTCGTTGTTC GAGCAAAAAGGTGTTGGGATTCTCTGAGGGATTGGACATCTATTAACTATCCAGAAATTG CTCACTCACTTCGGCCAGGTGTTTCAGAAGAAGACCTCAACAATTTTGAGGGGCAGCTTG GTTGGAAGCTCCCATTAGCAGTTCGCGTGCTCTATCGTTTTTGTGGTGGGCAAGATAGAA GTCCACATTTGAACGAAGAGGATGACTCTGATGAGGACAGTGGAGTTGATAGAGATTACG TGGGCCTGTTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9UK99 |
Definition |
sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens |
Align length |
152 |
Score (bit) |
63.2 |
E-value |
8.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B2LUR0 |
Definition |
tr|B2LUR0|B2LUR0_MALDO F-box-containing protein 2 OS=Malus domestica |
Align length |
138 |
Score (bit) |
143.0 |
E-value |
5.0e-33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955688|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_M09, 5' (552 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B2LUR0|B2LUR0_MALDO F-box-containing protein 2 OS=Malus domes... 143 5e-33 tr|Q9LND7|Q9LND7_ARATH T21E18.16 protein (Putative uncharacteriz... 140 4e-32 tr|B7FIW9|B7FIW9_MEDTR Putative uncharacterized protein OS=Medic... 135 2e-30 tr|A7QYR0|A7QYR0_VITVI Chromosome chr5 scaffold_253, whole genom... 127 4e-28 tr|A7QYR3|A7QYR3_VITVI Chromosome chr5 scaffold_253, whole genom... 125 1e-27 tr|Q53LT0|Q53LT0_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 112 2e-23 tr|Q53LS9|Q53LS9_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 112 2e-23 tr|Q0ITE4|Q0ITE4_ORYSJ Os11g0265200 protein OS=Oryza sativa subs... 112 2e-23 tr|B8BJY9|B8BJY9_ORYSI Putative uncharacterized protein OS=Oryza... 112 2e-23 tr|B4FWF3|B4FWF3_MAIZE Putative uncharacterized protein OS=Zea m... 109 8e-23 tr|B4FTG8|B4FTG8_MAIZE Putative uncharacterized protein OS=Zea m... 109 8e-23 tr|A9TRI3|A9TRI3_PHYPA Predicted protein OS=Physcomitrella paten... 107 3e-22 tr|A2ZD66|A2ZD66_ORYSI Putative uncharacterized protein OS=Oryza... 92 2e-17 tr|Q53LT6|Q53LT6_ORYSJ F-box domain, putative OS=Oryza sativa su... 91 4e-17 tr|Q2R7K1|Q2R7K1_ORYSJ F-box domain containing protein, expresse... 91 4e-17 tr|A8JFX6|A8JFX6_CHLRE Predicted protein OS=Chlamydomonas reinha... 89 2e-16 tr|A3CAB3|A3CAB3_ORYSJ Putative uncharacterized protein OS=Oryza... 86 2e-15 tr|Q501X3|Q501X3_DANRE F-box protein 3 OS=Danio rerio GN=fbxo3 P... 67 8e-10 tr|B2GUN1|B2GUN1_XENTR LOC100158620 protein (Fragment) OS=Xenopu... 65 2e-09 tr|Q9H0V2|Q9H0V2_HUMAN Putative uncharacterized protein DKFZp564... 65 3e-09 tr|Q86X90|Q86X90_HUMAN F-box protein 3 OS=Homo sapiens GN=FBXO3 ... 63 9e-09 tr|B4E3U2|B4E3U2_HUMAN cDNA FLJ59154, highly similar to F-box on... 63 9e-09 tr|Q6DCC4|Q6DCC4_XENLA Fbxo3-prov protein OS=Xenopus laevis GN=f... 62 2e-08 tr|A6H7H7|A6H7H7_BOVIN FBXO3 protein OS=Bos taurus GN=FBXO3 PE=2... 62 2e-08 tr|Q5RBZ1|Q5RBZ1_PONAB Putative uncharacterized protein DKFZp459... 60 6e-08 tr|B3KY16|B3KY16_HUMAN cDNA FLJ46597 fis, clone THYMU3046360, hi... 59 2e-07 tr|A7RYE8|A7RYE8_NEMVE Predicted protein OS=Nematostella vectens... 58 3e-07 tr|Q59GS0|Q59GS0_HUMAN F-box only protein 3 isoform 1 variant (F... 55 2e-06 tr|B6M3I0|B6M3I0_BRAFL Putative uncharacterized protein OS=Branc... 54 4e-06 tr|Q8C7I0|Q8C7I0_MOUSE Putative uncharacterized protein OS=Mus m... 54 5e-06
>tr|B2LUR0|B2LUR0_MALDO F-box-containing protein 2 OS=Malus domestica PE=2 SV=1 Length = 443
Score = 143 bits (361), Expect = 5e-33 Identities = 65/138 (47%), Positives = 88/138 (63%) Frame = +3
Query: 60 DAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICPSY 239 D +H IL + ED ++ACV + ASD+S+W C +D +L QP D GN+ PS+ Sbjct: 8 DLALHIILSKLGAEDSAKAACVSTKLRASASDESLWSLFCARDLHLSQPLDPLGNLAPSF 67
Query: 240 KEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEGQL 419 KE+Y+LW + F+MYP S V R KRCWD +R+W +IN+PE +L+ G SE D+ E L Sbjct: 68 KESYQLWRVTFKMYPWSLVKRVKRCWDKIRNWLTINFPEAVSTLKKGASEADIQEVEKIL 127
Query: 420 GWKLPLAVRVLYRFCGGQ 473 KLPL R+LYRF GQ Sbjct: 128 KVKLPLPTRILYRFHNGQ 145
>tr|Q9LND7|Q9LND7_ARATH T21E18.16 protein (Putative uncharacterized protein At1g06110) (At1g06110/T21E18_13) OS=Arabidopsis thaliana GN=At1g06110 PE=1 SV=1 Length = 436
Score = 140 bits (353), Expect = 4e-32 Identities = 64/141 (45%), Positives = 90/141 (63%) Frame = +3
Query: 60 DAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICPSY 239 D V+H +L + E+ R ACV +R + AS++S+W C D + P D HG+ PS+ Sbjct: 8 DLVLHIVLSKIGPENTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPHGDPAPSF 67
Query: 240 KEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEGQL 419 K AY+LW +FRMYP + V R + CWD+L+ W ++N+PE +LR GV+E+DL FE L Sbjct: 68 KRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSL 127
Query: 420 GWKLPLAVRVLYRFCGGQDRS 482 KLPL R+LYRF GQ+ S Sbjct: 128 KVKLPLPTRLLYRFVDGQELS 148
>tr|B7FIW9|B7FIW9_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 318
Score = 135 bits (339), Expect = 2e-30 Identities = 63/143 (44%), Positives = 84/143 (58%) Frame = +3
Query: 60 DAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICPSY 239 D +H I+ ED+ R +CV R+ SDDS+W +C ++ L QP DH GN PS+ Sbjct: 8 DLAIHEIMENLKPEDIARISCVSNRFKSFTSDDSLWSKICFRELSLTQPIDHLGNPTPSF 67
Query: 240 KEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEGQL 419 KEAY+ W F MYP S V R KRCWD+++ W + N+PE +L G SE ++ E L Sbjct: 68 KEAYQTWREAFVMYPWSLVKRVKRCWDNIKTWLTNNFPEARETLCEGASEVEIQELEDVL 127
Query: 420 GWKLPLAVRVLYRFCGGQDRSPH 488 KLPL R+LYRF GQ+ H Sbjct: 128 NVKLPLPTRILYRFHNGQEIEKH 150
>tr|A7QYR0|A7QYR0_VITVI Chromosome chr5 scaffold_253, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010293001 PE=4 SV=1 Length = 193
Score = 127 bits (319), Expect = 4e-28 Identities = 60/142 (42%), Positives = 86/142 (60%) Frame = +3
Query: 51 ELPDAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNIC 230 +L D ++AI+ + D +D +CV ++ + AS++S+W C +D L P D G Sbjct: 5 DLGDLAINAIISKLDTKDTVAVSCVSKKLRVSASEESLWLNHCSQDLGLSAPIDPLGKPA 64
Query: 231 PSYKEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFE 410 PS+KE Y+LW +F MYP V R KRCWD L++W S N+PE +LR G +E ++ E Sbjct: 65 PSFKETYRLWRESFGMYPWPLVKRVKRCWDRLKNWLSANFPEADATLRKGATEVEIEALE 124
Query: 411 GQLGWKLPLAVRVLYRFCGGQD 476 L KLPL R+LYRFC GQ+ Sbjct: 125 NILKVKLPLPTRLLYRFCDGQE 146
>tr|A7QYR3|A7QYR3_VITVI Chromosome chr5 scaffold_253, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010297001 PE=4 SV=1 Length = 298
Score = 125 bits (315), Expect = 1e-27 Identities = 59/142 (41%), Positives = 86/142 (60%) Frame = +3
Query: 51 ELPDAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNIC 230 +L D ++AI+ + D +D +CV ++ + AS++S+W C +D L P D G Sbjct: 5 DLGDLAINAIISKLDAKDTVAVSCVSKKLRVSASEESLWLNHCSQDLGLSAPIDPLGKPA 64
Query: 231 PSYKEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFE 410 PS+KE Y+LW +F MYP V R KRCWD L++W S N+P+ +LR G +E ++ E Sbjct: 65 PSFKETYQLWRESFGMYPWPLVKRVKRCWDRLKNWLSANFPDADATLRKGATEVEIEALE 124
Query: 411 GQLGWKLPLAVRVLYRFCGGQD 476 L KLPL R+LYRFC GQ+ Sbjct: 125 NILKVKLPLPTRLLYRFCDGQE 146
>tr|Q53LT0|Q53LT0_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os11g16390 PE=4 SV=1 Length = 457
Score = 112 bits (279), Expect = 2e-23 Identities = 54/140 (38%), Positives = 73/140 (52%) Frame = +3
Query: 54 LPDAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICP 233 L + ++ + AC R A DD++W+ C D L P G P Sbjct: 23 LEGLALDTVIAKAGARQAAALACASTRLRDAAGDDALWRRFCADDLALHAPLAPDGRALP 82
Query: 234 SYKEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEG 413 S+K+AYK+W +F MYP V R K W SL+ W S N+PE +L GVSE + + E Sbjct: 83 SFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAED 142
Query: 414 QLGWKLPLAVRVLYRFCGGQ 473 LG+KLPL ++LYRFC GQ Sbjct: 143 DLGFKLPLPTKLLYRFCNGQ 162
>tr|Q53LS9|Q53LS9_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os11g16390 PE=4 SV=1 Length = 425
Score = 112 bits (279), Expect = 2e-23 Identities = 54/140 (38%), Positives = 73/140 (52%) Frame = +3
Query: 54 LPDAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICP 233 L + ++ + AC R A DD++W+ C D L P G P Sbjct: 23 LEGLALDTVIAKAGARQAAALACASTRLRDAAGDDALWRRFCADDLALHAPLAPDGRALP 82
Query: 234 SYKEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEG 413 S+K+AYK+W +F MYP V R K W SL+ W S N+PE +L GVSE + + E Sbjct: 83 SFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAED 142
Query: 414 QLGWKLPLAVRVLYRFCGGQ 473 LG+KLPL ++LYRFC GQ Sbjct: 143 DLGFKLPLPTKLLYRFCNGQ 162
>tr|Q0ITE4|Q0ITE4_ORYSJ Os11g0265200 protein OS=Oryza sativa subsp. japonica GN=Os11g0265200 PE=4 SV=1 Length = 495
Score = 112 bits (279), Expect = 2e-23 Identities = 54/140 (38%), Positives = 73/140 (52%) Frame = +3
Query: 54 LPDAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICP 233 L + ++ + AC R A DD++W+ C D L P G P Sbjct: 61 LEGLALDTVIAKAGARQAAALACASTRLRDAAGDDALWRRFCADDLALHAPLAPDGRALP 120
Query: 234 SYKEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEG 413 S+K+AYK+W +F MYP V R K W SL+ W S N+PE +L GVSE + + E Sbjct: 121 SFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAED 180
Query: 414 QLGWKLPLAVRVLYRFCGGQ 473 LG+KLPL ++LYRFC GQ Sbjct: 181 DLGFKLPLPTKLLYRFCNGQ 200
>tr|B8BJY9|B8BJY9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35735 PE=4 SV=1 Length = 457
Score = 112 bits (279), Expect = 2e-23 Identities = 54/140 (38%), Positives = 73/140 (52%) Frame = +3
Query: 54 LPDAVVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICP 233 L + ++ + AC R A DD++W+ C D L P G P Sbjct: 23 LEGLALDTVIAKAGARQAAALACASTRLRDAAGDDALWRRFCADDLALHAPLAPDGRALP 82
Query: 234 SYKEAYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEG 413 S+K+AYK+W +F MYP V R K W SL+ W S N+PE +L GVSE + + E Sbjct: 83 SFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAED 142
Query: 414 QLGWKLPLAVRVLYRFCGGQ 473 LG+KLPL ++LYRFC GQ Sbjct: 143 DLGFKLPLPTKLLYRFCNGQ 162
>tr|B4FWF3|B4FWF3_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 410
Score = 109 bits (273), Expect = 8e-23 Identities = 52/136 (38%), Positives = 74/136 (54%) Frame = +3
Query: 66 VVHAILRRCDFEDVCRSACVDRRWHLIASDDSVWQCLCEKDFYLFQPSDHHGNICPSYKE 245 V+ ++ R AC R +DDS+W+ C +D L P D G PS++ Sbjct: 23 VLDTVISRAGARPAAALACASTRLRTAVADDSLWRRFCGEDLGLDAPVDPEGRPLPSFQV 82
Query: 246 AYKLWCMNFRMYPRSFVVRAKRCWDSLRDWTSINYPEIAHSLRPGVSEEDLNNFEGQLGW 425 AYK+W +F MYP V R ++ W S++ W S N+PE +L GVSE L + E LG+ Sbjct: 83 AYKVWSESFGMYPLPMVKRVRQFWTSMKTWLSENFPEAYKTLCEGVSEAQLKSAEDDLGF 142
Query: 426 KLPLAVRVLYRFCGGQ 473 KLP+ ++LYRFC Q Sbjct: 143 KLPMPTKLLYRFCNAQ 158
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