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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955691
Clone id TST39A01NGRL0023_M12
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_M12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCGAGACCTAGCTCTCGCGTTGAGCACGCACGCACGCACACACAGCAGACAAGCAGCTAT
GGCGAAGAAACCTTGGGGAGGCGCTGGTGCCTGGGCTGTAGATTCAGAGCTCGCAGAGAA
CCAACTCGAACAGGAAGAGCCGCAATACCATCATCAACCGGCTTCGCCCCTCTTTGCAGG
AGATGCGGCTTTCCCATCTCTAGGAGAGGCGGCGCACTCCAAAACAAAGAAGAAGAAGCA
GCAGCCTGTTTCTCTTGCCAAATTTATGGCAGGTGGCAGCCCCCTTCTCTCGGACTCGAA
AGGCCTGACCATAGAAGAGAAGATGGCATTGCCCACAGGGCCTCGCGACAGATCTGGTGA
GGAAGAACCTCATGGAGGGCTTGGTGGTGGGTTTAGGGACTATGGAGGCTACAGAGGGAG
AGGGCAGGGATCGTGACTATGGAAGAGATCGGGAGGGTGGGCTTTGGTAGCCCGGAGATC
CGACAGAGAAAGGGGGGGATTTGGGCAAGGGAG
■■Homology search results ■■ -
sp_hit_id P55665
Definition sp|P55665|Y4TK_RHISN Uncharacterized cyclodeaminase y4tK OS=Rhizobium sp. (strain NGR234)
Align length 46
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955691|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_M12, 5'
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55665|Y4TK_RHISN Uncharacterized cyclodeaminase y4tK OS=Rhiz...    32   1.6  
sp|Q7L3S4|ZN771_HUMAN Zinc finger protein 771 OS=Homo sapiens GN...    32   2.1  
sp|Q96SQ5|ZN587_HUMAN Zinc finger protein 587 OS=Homo sapiens GN...    31   3.7  
sp|P36002|PTK1_YEAST Serine/threonine-protein kinase PTK1/STK1 O...    30   6.1  
sp|P0C6Y7|PRDM9_RAT Histone-lysine N-methyltransferase PRDM9 OS=...    30   6.3  
sp|P25781|CYSP_THEAN Cysteine proteinase OS=Theileria annulata G...    30   8.2  

>sp|P55665|Y4TK_RHISN Uncharacterized cyclodeaminase y4tK
           OS=Rhizobium sp. (strain NGR234) GN=y4tK PE=3 SV=1
          Length = 331

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 143 QYHHQPASPLFAGDAAFPSLGEA-AHSKTKKKKQQPVSLAKFMAGG 277
           + HH   + L A DAAFP LGE  A  KT + ++  +++A     G
Sbjct: 261 ELHHAIEAGLIARDAAFPELGEVIAGVKTGRTRESDITIADLTGTG 306


>sp|Q7L3S4|ZN771_HUMAN Zinc finger protein 771 OS=Homo sapiens
           GN=ZNF771 PE=1 SV=1
          Length = 317

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = +1

Query: 1   ARPSSRVEHARTHTQQTSSYGEETLGRRWCLGCRFRARREPTRTGRAAIPSSTGFAPL-C 177
           AR S+  +HARTHT      GE   G   C G RF  +   T+ GR    + TG  P  C
Sbjct: 73  ARRSTLAKHARTHT------GERPFGCTEC-GRRFSQKSALTKHGR----THTGERPYEC 121

Query: 178 RRCGFPISRRGGALQNKE----EEAAACFSC 258
             C    S      Q++     E+  AC  C
Sbjct: 122 PECDKRFSAASNLRQHRRRHTGEKPYACAHC 152


>sp|Q96SQ5|ZN587_HUMAN Zinc finger protein 587 OS=Homo sapiens
           GN=ZNF587 PE=2 SV=1
          Length = 575

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = +1

Query: 1   ARPSSRVEHARTHTQQTSSYGEETLGRRWCLGCRFRARREPTRTGRAAIPSSTGFAPL-C 177
           +R SS ++H R HT QT+   EE         C     ++ +      +   TG  P  C
Sbjct: 278 SRKSSLIQHQRVHTGQTAYPCEE---------CGKSFSQKGSLISHQLV--HTGEGPYEC 326

Query: 178 RRCGFPISRRGGALQNKE----EEAAACFSC 258
           R CG    ++G  +Q+++    E A  C  C
Sbjct: 327 RECGKSFGQKGNLIQHQQGHTGERAYHCGEC 357


>sp|P36002|PTK1_YEAST Serine/threonine-protein kinase PTK1/STK1
           OS=Saccharomyces cerevisiae GN=PTK1 PE=1 SV=2
          Length = 649

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 212 AHSKTKKKKQQPVS-LAKFMAGGSPLLSDSKGLTIEEKMALP 334
           +H+ + K  QQP+S ++ F   G  LLS S G  +++K +LP
Sbjct: 4   SHNHSTKISQQPISSVSAFKFFGKKLLSSSHGNKLKKKASLP 45


>sp|P0C6Y7|PRDM9_RAT Histone-lysine N-methyltransferase PRDM9
           OS=Rattus norvegicus GN=Prdm9 PE=3 SV=1
          Length = 796

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
 Frame = +1

Query: 10  SSRVEHARTHTQQTSSYGEETLGRRWCLGCRFRARREPTRTGRAAIPSSTGFAP-LCRRC 186
           SS + H RTHT      GE+    R C G  F  +    R  R    + TG  P +CR C
Sbjct: 671 SSLIRHQRTHT------GEKPYICREC-GLGFTQKSNLIRHLR----THTGEKPYICREC 719

Query: 187 GFPISRRGGALQNKE----EEAAACFSC 258
           G   +R+   +Q++     E+   C  C
Sbjct: 720 GLGFTRKSNLIQHQRTHTGEKPYICREC 747


>sp|P25781|CYSP_THEAN Cysteine proteinase OS=Theileria annulata
           GN=TACP PE=2 SV=2
          Length = 441

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 322 DGIAHRASRQIW*GRTSWRAWWWV*GLWRLQRERAGIVTMEEIGRVGFG 468
           +G+ H    + W  + SW   W   G  RLQR + G   +++ G + FG
Sbjct: 388 EGVDHETGMRYWIIKNSWGEDWGENGFLRLQRTKKG---LDKCGILTFG 433
tr_hit_id A7P874
Definition tr|A7P874|A7P874_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 89
Score (bit) 60.5
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955691|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_M12, 5'
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P874|A7P874_VITVI Chromosome chr3 scaffold_8, whole genome ...    60   4e-08
tr|A5BQN4|A5BQN4_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|Q7XK13|Q7XK13_ORYSJ OSJNBa0044K18.31 protein OS=Oryza sativa ...    56   1e-06
tr|Q0JCC5|Q0JCC5_ORYSJ Os04g0480100 protein OS=Oryza sativa subs...    56   1e-06
tr|Q9SZP8|Q9SZP8_ARATH Putative uncharacterized protein F20M13.2...    55   1e-06
tr|Q9AUJ7|Q9AUJ7_WHEAT Eukaryotic translation initiation factor ...    52   1e-05
tr|Q6ZI51|Q6ZI51_ORYSJ Os02g0595800 protein OS=Oryza sativa subs...    51   3e-05
tr|B8LKF3|B8LKF3_PICSI Putative uncharacterized protein OS=Picea...    51   3e-05
tr|B6TZD9|B6TZD9_MAIZE Eukaryotic translation initiation factor ...    50   8e-05
tr|Q9SAD7|Q9SAD7_ARATH F3F19.4 protein OS=Arabidopsis thaliana G...    49   2e-04
tr|Q0WMZ1|Q0WMZ1_ARATH Eukaryotic initiation factor 4B OS=Arabid...    49   2e-04
tr|Q9M7E8|Q9M7E8_ARATH Eukaryotic initiation factor 4B OS=Arabid...    47   4e-04
tr|B6TRD2|B6TRD2_MAIZE Eukaryotic translation initiation factor ...    47   4e-04
tr|A5JVC2|A5JVC2_BRACM Putative uncharacterized protein (Fragmen...    46   0.001
tr|Q0E1I1|Q0E1I1_ORYSJ Os02g0439700 protein OS=Oryza sativa subs...    45   0.002
tr|B8AH33|B8AH33_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q9LIN5|Q9LIN5_ARATH Eukaryotic initiation factor 4B OS=Arabid...    44   0.004
tr|A3AUW7|A3AUW7_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.004
tr|Q9SQK7|Q9SQK7_ARATH EIF4B OS=Arabidopsis thaliana GN=eIF4B PE...    43   0.007
tr|Q4RRL2|Q4RRL2_TETNG Chromosome 16 SCAF15002, whole genome sho...    39   0.14 
tr|A7P4A0|A7P4A0_VITVI Chromosome chr1 scaffold_5, whole genome ...    36   0.88 
tr|Q00T59|Q00T59_OSTTA Chromosome 17 contig 1, DNA sequence OS=O...    36   1.2  
tr|B4EK90|B4EK90_BURCJ Acyl-CoA dehydrogenase OS=Burkholderia ce...    34   3.4  
tr|Q4SK06|Q4SK06_TETNG Chromosome 10 SCAF14571, whole genome sho...    34   4.4  
tr|A5C2N0|A5C2N0_VITVI Putative uncharacterized protein OS=Vitis...    34   4.4  
tr|B2WLZ2|B2WLZ2_PYRTR Condensin complex component cnd3 OS=Pyren...    33   5.7  
tr|Q05QG4|Q05QG4_9SYNE Putative uncharacterized protein OS=Synec...    33   5.7  
tr|Q9M7F1|Q9M7F1_WHEAT Eukaryotic initiation factor 4B (Fragment...    33   5.7  
tr|A8ISG3|A8ISG3_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   5.7  
tr|Q0UWA1|Q0UWA1_PHANO Putative uncharacterized protein OS=Phaeo...    33   5.7  

>tr|A7P874|A7P874_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036072001
           PE=4 SV=1
          Length = 380

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
 Frame = +2

Query: 98  VDSELAENQLEQEEPQYHHQPASPLFAGDAAFPSLGEAAHSKTKKKKQQPVSLAKFMA-- 271
           +DSE  E++L Q++     + A       A FP+L  AA +K+KKKK Q +SL++F A  
Sbjct: 16  LDSEEHEDELLQQQRDDKGRQAPE---ASADFPTLATAAATKSKKKKGQTLSLSEFSAFG 72

Query: 272 -GGSPLLSDSKGLTIEEKMALPTGPRDRS 355
            G S   S +KGLT E+ M LPTGPR RS
Sbjct: 73  AGKSAQPSQTKGLTHEDLMMLPTGPRQRS 101


>tr|A5BQN4|A5BQN4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029831 PE=4 SV=1
          Length = 1434

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 12/98 (12%)
 Frame = +2

Query: 98  VDSELAENQLEQEEPQYHHQPASPLFAG---------DAAFPSLGEAAHSKTKKKKQQPV 250
           +DSE  E++L Q++        +  F+G          A FP+L  AA +K+KKKK Q +
Sbjct: 16  LDSEEHEDELLQQQ---RDDKVNGEFSGGEGRQAPEASADFPTLATAAATKSKKKKGQTL 72

Query: 251 SLAKFMA---GGSPLLSDSKGLTIEEKMALPTGPRDRS 355
           SL++F A   G S   S +KGLT E+ M LPTGPR RS
Sbjct: 73  SLSEFSAFGAGKSAQPSQTKGLTHEDLMMLPTGPRQRS 110


>tr|Q7XK13|Q7XK13_ORYSJ OSJNBa0044K18.31 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0044K18.31 PE=4 SV=1
          Length = 546

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
 Frame = +2

Query: 98  VDSELAENQLEQEEPQYHHQPASPLFAGDAA-FPSLGEAAHS-----KTKKKKQQPVSLA 259
           +D+E AE + E+E+      P  P  AG AA FPSL EAA +     + KK K   +SL+
Sbjct: 13  LDAERAEEE-EREQAAAFPAPEPPAAAGGAASFPSLREAAAAAGGGKQKKKNKGTTLSLS 71

Query: 260 KFMA---------GGSPLLSDSKGLTIEEKMALPTGPRDRS 355
           +F           GG     D +GLT EE M LPTGPR+RS
Sbjct: 72  EFSGYGAQGQRRGGGGAAPVDPRGLTPEEMMMLPTGPRERS 112


>tr|Q0JCC5|Q0JCC5_ORYSJ Os04g0480100 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0480100 PE=2 SV=1
          Length = 532

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
 Frame = +2

Query: 98  VDSELAENQLEQEEPQYHHQPASPLFAGDAA-FPSLGEAAHS-----KTKKKKQQPVSLA 259
           +D+E AE + E+E+      P  P  AG AA FPSL EAA +     + KK K   +SL+
Sbjct: 13  LDAERAEEE-EREQAAAFPAPEPPAAAGGAASFPSLREAAAAAGGGKQKKKNKGTTLSLS 71

Query: 260 KFMA---------GGSPLLSDSKGLTIEEKMALPTGPRDRS 355
           +F           GG     D +GLT EE M LPTGPR+RS
Sbjct: 72  EFSGYGAQGQRRGGGGAAPVDPRGLTPEEMMMLPTGPRERS 112


>tr|Q9SZP8|Q9SZP8_ARATH Putative uncharacterized protein F20M13.270
           (Putative uncharacterized protein AT4g38710)
           OS=Arabidopsis thaliana GN=F20M13.270 PE=2 SV=1
          Length = 452

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
 Frame = +2

Query: 98  VDSELAENQLEQEEPQYHHQPASPLFAGDAAFPSLGEAAHSKTKKKKQQPVSLAKFMAGG 277
           +++E  E +L+Q+ P   +Q +S   + D  FPSL  AA +KTKKKK Q +SLA+F   G
Sbjct: 17  LEAEEHEAELKQQ-PSPTNQKSSAEDSSD--FPSLAAAATTKTKKKKGQTISLAEFATYG 73

Query: 278 SPLLS---DSKGLTIEEKMALPTGPRDRS 355
           +        ++ LT  E +ALPTGPR+RS
Sbjct: 74  TAKAKPAPQTERLTQAELVALPTGPRERS 102


>tr|Q9AUJ7|Q9AUJ7_WHEAT Eukaryotic translation initiation factor 4B
           OS=Triticum aestivum GN=eIF4B PE=4 SV=1
          Length = 527

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
 Frame = +2

Query: 128 EQEEPQYHHQPASPLFAGDAA-FPSLGEAAHS---KTKKKKQQPVSLAKFM---AGGSPL 286
           E+E       P  P  AG AA FPSL EA  +   K KKKK   +SL++F    A G+P 
Sbjct: 21  EREHAAAFPAPDPPAAAGGAASFPSLKEAVVAGGGKQKKKKGTTLSLSEFTTYGAAGAPR 80

Query: 287 L---SDSKGLTIEEKMALPTGPRDRS 355
               ++ KGLT +E M LPTGPR+RS
Sbjct: 81  RVAPAEPKGLTPQEMMMLPTGPRERS 106


>tr|Q6ZI51|Q6ZI51_ORYSJ Os02g0595800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1126_D09.32 PE=1 SV=1
          Length = 519

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
 Frame = +2

Query: 128 EQEEPQYHHQPASPLFAGDAAFPSLGEAAHS----KTKKKKQQPVSLAKFMAGGSPL--- 286
           E+ E +     A+P  A  A FPSL EAA      K+KKKK   +SL++F   G+     
Sbjct: 19  ERAEEEERESAAAP--APAAGFPSLREAAAGAAAGKSKKKKGTTLSLSEFTTYGAAAGRR 76

Query: 287 ----LSDSKGLTIEEKMALPTGPRDRS 355
                ++ KGLT +E M LPTGPR+RS
Sbjct: 77  PAAAAAEPKGLTPQEMMMLPTGPRERS 103


>tr|B8LKF3|B8LKF3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 567

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 14/73 (19%)
 Frame = +2

Query: 179 GDAAFPSLGEAAH--SKTKKKKQQPVSLAKFMAG------------GSPLLSDSKGLTIE 316
           G+ +FPSL EAA      KK K Q +S+++F  G            G+   S SKGLT E
Sbjct: 42  GEESFPSLREAAAVGKPKKKNKGQTLSISEFATGIYVGPGGRTRGAGAASASVSKGLTTE 101

Query: 317 EKMALPTGPRDRS 355
           E M LPTGPR+RS
Sbjct: 102 ELMMLPTGPRERS 114


>tr|B6TZD9|B6TZD9_MAIZE Eukaryotic translation initiation factor 4B
           OS=Zea mays PE=2 SV=1
          Length = 527

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 12/98 (12%)
 Frame = +2

Query: 98  VDSELAENQLEQEEPQYHHQPASPLFAGDAA-FPSLGEAAHS----KTKKK-KQQPVSLA 259
           +D+E AE + E+E+         PL AG AA FPSL EAA +    K+KKK K   +SL+
Sbjct: 15  LDAERAEEE-EREQALTFPALEPPLPAGGAASFPSLREAAAAGGGGKSKKKNKGTTLSLS 73

Query: 260 KFMAGGSPLLS------DSKGLTIEEKMALPTGPRDRS 355
           +F   G+          + KGLT +E + LPTGPR+RS
Sbjct: 74  EFTTYGAAAAQRRAAPVEPKGLTHDEMLLLPTGPRERS 111


>tr|Q9SAD7|Q9SAD7_ARATH F3F19.4 protein OS=Arabidopsis thaliana
           GN=F3F19.4 PE=4 SV=1
          Length = 549

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +2

Query: 161 ASPLFAGDAAFPSLGEAAHSKTKKKKQQPVSLAKFMAGGSPLLSDSKGLTIEEKMALPTG 340
           A+   A   +FPSL EAA +K+ KKK++ ++L++F  G     S S GLT E+ + LPTG
Sbjct: 26  ATATAADSQSFPSLKEAATAKSSKKKKK-MTLSEFTKGAYTAPS-SAGLTREQMLQLPTG 83

Query: 341 PRDRS 355
           PR RS
Sbjct: 84  PRQRS 88