NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955705
Clone id TST39A01NGRL0023_N02
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_N02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGTGTTACATGACACGTCTCGTAGACGATTGTTTCTCCGTCCTGTTGCTCAAGGAGAAGG
TGTCTGCGTCACGGGGCCATGTCTGATTGAGATGTGGGATTTTGCAGTTTCCTCCGTGGA
TACAAGCATGGATGTGGATGTGGACATGGATACTACTGATTCAAATTCTGCAAATGCAAA
TCTGATAGACACATACTTCTACAATCAGTTTGAGGATGATTTTGATGACTCCGACCTTTC
CTAGATCCTGGGACTTTTGGGTGTTGTTGTCAGCCTAGGAATTAGTATTATTAAAATGCC
TAAAAGCAAGGAGCCTTGTAGCCAAGAAGCCTGCGATATTCAAACATGCTTAGTGAAGAA
CAATTTTATAACTGAGAGGTGTTTTCCAGTTATAGAGGCCCTGCAAGCATGCTGTGAAAA
GTGCAATAGCAAATCCACACATTGTGCATCACTATCAGGCCTTTTAGGTCAAAGGAAAAA
GAAGTTATGATTACGTACCCAGGTCGGATTGGGGAAGGTCTGGGTACTGTTTTCAACGTG
TAGATTTTGTTGCTAATGCTACATACTTTTAGATGATTGTTTATATCTTATATATTGAAA
CTTGGAAAAGCGGGTGTGAGCGACAAGGGCATGGA
■■Homology search results ■■ -
sp_hit_id Q61908
Definition sp|Q61908|MTCPA_MOUSE Protein p8 MTCP-1 OS=Mus musculus
Align length 42
Score (bit) 48.9
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955705|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_N02, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61908|MTCPA_MOUSE Protein p8 MTCP-1 OS=Mus musculus GN=Mtcp1...    49   2e-05
sp|P56277|MTCPA_HUMAN Protein p8 MTCP-1 OS=Homo sapiens GN=MTCP1...    46   1e-04
sp|Q3E7A9|YM194_YEAST Uncharacterized protein YMR194C-B OS=Sacch...    42   0.003
sp|Q9UKQ2|ADA28_HUMAN ADAM 28 OS=Homo sapiens GN=ADAM28 PE=2 SV=2      34   0.72 
sp|Q9JLN6|ADA28_MOUSE ADAM 28 OS=Mus musculus GN=Adam28 PE=1 SV=3      33   0.94 
sp|Q60411|ADAM2_CAVPO Disintegrin and metalloproteinase domain-c...    31   4.7  

>sp|Q61908|MTCPA_MOUSE Protein p8 MTCP-1 OS=Mus musculus GN=Mtcp1
           PE=2 SV=1
          Length = 68

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = +2

Query: 296 MPKSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEK 421
           MP+ K+PC ++AC+IQ CL  NN++  +C  VI+ L+ CC +
Sbjct: 1   MPQ-KDPCQKQACEIQKCLQANNYLESKCQAVIQELRKCCAR 41


>sp|P56277|MTCPA_HUMAN Protein p8 MTCP-1 OS=Homo sapiens GN=MTCP1
           PE=1 SV=1
          Length = 68

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +2

Query: 296 MPKSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACC 415
           MP+ K+PC ++AC+IQ CL  N+++  +C  VI+ L+ CC
Sbjct: 1   MPQ-KDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39


>sp|Q3E7A9|YM194_YEAST Uncharacterized protein YMR194C-B
           OS=Saccharomyces cerevisiae GN=YMR194C-B PE=4 SV=1
          Length = 73

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 314 PCSQEACDIQTCLVKNNFITERCFPVIEALQACCEK 421
           PC +EAC IQ CL+ + +   +C  VI+ L  CC K
Sbjct: 4   PCQKEACAIQDCLLSHQYDDAKCAKVIDQLYICCSK 39


>sp|Q9UKQ2|ADA28_HUMAN ADAM 28 OS=Homo sapiens GN=ADAM28 PE=2 SV=2
          Length = 775

 Score = 33.9 bits (76), Expect = 0.72
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 305 SKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSK 433
           + E C+   CD +TC +K  F   +C     AL  CCEKC  K
Sbjct: 425 TSEECTNICCDAKTCKIKATF---QC-----ALGECCEKCQFK 459


>sp|Q9JLN6|ADA28_MOUSE ADAM 28 OS=Mus musculus GN=Adam28 PE=1 SV=3
          Length = 793

 Score = 33.5 bits (75), Expect = 0.94
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 317 CSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSK 433
           C+ + CD +TC +K  F   +C     AL  CCEKC  K
Sbjct: 432 CTNKCCDARTCKIKAGF---QC-----ALGECCEKCQLK 462


>sp|Q60411|ADAM2_CAVPO Disintegrin and metalloproteinase
           domain-containing protein 2 OS=Cavia porcellus GN=ADAM2
           PE=2 SV=1
          Length = 735

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 305 SKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKS 436
           S+E C    CD  TC +K+   T RC     A   CC +C  K+
Sbjct: 402 SQEECQDTCCDAATCRLKS---TSRC-----AQGPCCNQCEFKT 437
tr_hit_id A7QCJ2
Definition tr|A7QCJ2|A7QCJ2_VITVI Chromosome chr12 scaffold_78, whole genome shotgun sequence OS=Vitis vinifera
Align length 51
Score (bit) 79.7
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955705|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_N02, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QCJ2|A7QCJ2_VITVI Chromosome chr12 scaffold_78, whole genom...    80   1e-13
tr|Q2QWU3|Q2QWU3_ORYSJ cDNA clone:J013051E22, full insert sequen...    74   1e-11
tr|B8BNH4|B8BNH4_ORYSI Putative uncharacterized protein OS=Oryza...    74   1e-11
tr|B6SLD0|B6SLD0_MAIZE Putative uncharacterized protein OS=Zea m...    72   2e-11
tr|B0WUV0|B0WUV0_CULQU Putative uncharacterized protein OS=Culex...    54   6e-06
tr|B6NXZ2|B6NXZ2_BRAFL Putative uncharacterized protein OS=Branc...    54   1e-05
tr|B6L2V0|B6L2V0_BRAFL Putative uncharacterized protein OS=Branc...    54   1e-05
tr|B7YZN8|B7YZN8_DROME CG42381 OS=Drosophila melanogaster GN=CG4...    53   2e-05
tr|B4QGI7|B4QGI7_DROSI GD25176 OS=Drosophila simulans GN=GD25176...    53   2e-05
tr|B4P8V4|B4P8V4_DROYA GE13686 OS=Drosophila yakuba GN=GE13686 P...    53   2e-05
tr|B4I7T9|B4I7T9_DROSE GM15697 OS=Drosophila sechellia GN=GM1569...    53   2e-05
tr|B5X8G1|B5X8G1_SALSA p8 MTCP-1 OS=Salmo salar GN=MTCPA PE=4 SV=1     52   2e-05
tr|B5X728|B5X728_SALSA p8 MTCP-1 OS=Salmo salar GN=MTCPA PE=4 SV=1     52   2e-05
tr|B3S8S9|B3S8S9_TRIAD Putative uncharacterized protein OS=Trich...    52   3e-05
tr|B3NMZ6|B3NMZ6_DROER GG20754 OS=Drosophila erecta GN=GG20754 P...    52   4e-05
tr|Q0VBY0|Q0VBY0_BOVIN Mature T-cell proliferation 1 OS=Bos taur...    50   1e-04
tr|Q4TA75|Q4TA75_TETNG Chromosome undetermined SCAF7419, whole g...    49   2e-04
tr|A3KGA6|A3KGA6_MOUSE Mature T-cell proliferation 1 (Fragment) ...    49   3e-04
tr|A3KGA5|A3KGA5_MOUSE Mature T-cell proliferation 1 OS=Mus musc...    49   3e-04
tr|Q16XI6|Q16XI6_AEDAE Putative uncharacterized protein OS=Aedes...    48   4e-04
tr|Q5HYP9|Q5HYP9_HUMAN Mature T-cell proliferation 1 neighbor OS...    46   0.002
tr|B5RTE0|B5RTE0_DEBHA DEHA2D06776p OS=Debaryomyces hansenii GN=...    46   0.002
tr|A3CFJ8|A3CFJ8_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.008
tr|B2WG52|B2WG52_PYRTR Putative uncharacterized protein OS=Pyren...    44   0.008
tr|A8HS19|A8HS19_CHLRE Predicted protein OS=Chlamydomonas reinha...    43   0.014
tr|Q4P7X5|Q4P7X5_USTMA Putative uncharacterized protein OS=Ustil...    42   0.041
tr|B3LM82|B3LM82_YEAS1 Putative uncharacterized protein OS=Sacch...    42   0.041
tr|A6ZMQ6|A6ZMQ6_YEAS7 Conserved protein OS=Saccharomyces cerevi...    42   0.041
tr|Q0UIC3|Q0UIC3_PHANO Putative uncharacterized protein OS=Phaeo...    41   0.053
tr|B0DC55|B0DC55_LACBS Predicted protein OS=Laccaria bicolor (st...    41   0.053

>tr|A7QCJ2|A7QCJ2_VITVI Chromosome chr12 scaffold_78, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035419001
           PE=4 SV=1
          Length = 63

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
 Frame = +2

Query: 296 MPK-SKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHC 445
           MPK SKEPC +EACDIQ CL KNNF+ ++C  VIE LQ+CCEKC   STHC
Sbjct: 1   MPKQSKEPCKKEACDIQACLSKNNFLPQKCRRVIELLQSCCEKCEYNSTHC 51


>tr|Q2QWU3|Q2QWU3_ORYSJ cDNA clone:J013051E22, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g08210 PE=4
           SV=1
          Length = 63

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +2

Query: 302 KSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHC 445
           +SKEPC +EACDIQ CL KN F +++C  VI+ LQ+CCE+C  KSTHC
Sbjct: 4   QSKEPCKKEACDIQACLSKNMFDSKKCVRVIQLLQSCCEQCEYKSTHC 51


>tr|B8BNH4|B8BNH4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37705 PE=4 SV=1
          Length = 63

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +2

Query: 302 KSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHC 445
           +SKEPC +EACDIQ CL KN F +++C  VI+ LQ+CCE+C  KSTHC
Sbjct: 4   QSKEPCKKEACDIQACLSKNMFDSKKCVRVIQLLQSCCEQCEYKSTHC 51


>tr|B6SLD0|B6SLD0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 63

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = +2

Query: 305 SKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHC 445
           SKEPC +EACDIQ CL KN F + +C  VI+ LQ+CCE+C  KSTHC
Sbjct: 5   SKEPCKKEACDIQACLSKNIFDSRKCVRVIQLLQSCCEQCEYKSTHC 51


>tr|B0WUV0|B0WUV0_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ011174 PE=4 SV=1
          Length = 83

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = +2

Query: 302 KSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHCA 448
           KSK+PC   AC IQTCL ++ F   RC+ V+EA++ CC K +  S  C+
Sbjct: 5   KSKDPCKVSACRIQTCLKEHKFDETRCYDVLEAMRQCCLKWHQVSLCCS 53


>tr|B6NXZ2|B6NXZ2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_238813 PE=4 SV=1
          Length = 68

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +2

Query: 296 MPKSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHC 445
           M +  +PC ++ACDIQ CL  NN+   RC  V+ A++ CCEK  ++ + C
Sbjct: 1   MKEKPDPCQRQACDIQVCLQANNYKESRCESVLRAMERCCEKPWAQDSVC 50


>tr|B6L2V0|B6L2V0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_202147 PE=4 SV=1
          Length = 68

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +2

Query: 296 MPKSKEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHC 445
           M +  +PC ++ACDIQ CL  NN+   RC  V+ A++ CCEK  ++ + C
Sbjct: 1   MKEKPDPCQRQACDIQVCLQANNYKESRCESVLRAMERCCEKPWAQDSVC 50


>tr|B7YZN8|B7YZN8_DROME CG42381 OS=Drosophila melanogaster
           GN=CG42381 PE=4 SV=1
          Length = 76

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +2

Query: 308 KEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHCA 448
           K+PC   AC IQ CL KN++  ++C  V+EA++ CC K + +S  C+
Sbjct: 6   KDPCKPNACRIQACLTKNHYQEDKCLDVLEAMRQCCLKWHKESLCCS 52


>tr|B4QGI7|B4QGI7_DROSI GD25176 OS=Drosophila simulans GN=GD25176
           PE=4 SV=1
          Length = 151

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +2

Query: 308 KEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHCA 448
           K+PC   AC IQ CL KN++  ++C  V+EA++ CC K + +S  C+
Sbjct: 6   KDPCKPNACRIQACLTKNHYQEDKCLDVLEAMRQCCLKWHKESLCCS 52


>tr|B4P8V4|B4P8V4_DROYA GE13686 OS=Drosophila yakuba GN=GE13686 PE=4
           SV=1
          Length = 151

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +2

Query: 308 KEPCSQEACDIQTCLVKNNFITERCFPVIEALQACCEKCNSKSTHCA 448
           K+PC   AC IQ CL KN++  ++C  V+EA++ CC K + +S  C+
Sbjct: 6   KDPCKANACRIQACLTKNHYQEDKCLDVLEAMRQCCLKWHKESLCCS 52