DK955706 |
Clone id |
TST39A01NGRL0023_N03 |
Library |
TST39 |
Length |
599 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_N03. 5' end sequence. |
Accession |
DK955706 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GAATAATGAGTCAATAGAAGAGTTGCTTGCTATGGGCTTTACTCGTGATCAAGTGGATCA GATTTTGCAAACTGCCTTCAGCGTTGATGACGCTATAACTCTACTTCTTCGTGGTGATGG AGACACAGAAGCTATGGCCAATGGATTTGCTCAAGATTCTTTTCCGATTGAAGTTGCTGA AAGCTCATCAAATGTACTTACGAGTGGTGGGATTCAAACAGCACTTGAAGAATCGGAGGG TCAGAGGGATTTTGAGATGGAAGAAGACATAGCCACAAAGTTGACAGGGGACCCATTGGC CGAGTACGACATTGACGTGCACAAGGAAGGAGAAGCCATACTTGCCTATTTGGAGTTGTT GAACTCAAAGAGCACGCCTTGCTAAATGTCGAATTTGATCTGGCAAGGGCATTGTGAATA TGGTTGTGACATGTGTACAAAAATCTACTTCCTACATAGCANAGACGTTTCGAGGAAGAA CCCAAAAACTATACGCTTGGCCATGCTGTCGCCAAAGAATCATGAAATACACTGACTTGT ATACTGACCTGTGAGCTTGTATAGAGTGTCATATTTGGCATTATACTGACGTTCATCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P32628 |
Definition |
sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae |
Align length |
38 |
Score (bit) |
33.9 |
E-value |
0.65 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TT89 |
Definition |
tr|A9TT89|A9TT89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
127 |
Score (bit) |
77.4 |
E-value |
6.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955706|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_N03, 5' (599 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TT89|A9TT89_PHYPA Predicted protein OS=Physcomitrella paten... 77 6e-13 tr|A7QS43|A7QS43_VITVI Chromosome undetermined scaffold_155, who... 69 2e-10 tr|Q8S899|Q8S899_ARATH Putative uncharacterized protein At2g1255... 52 3e-05 tr|Q500V3|Q500V3_ARATH At2g12550 OS=Arabidopsis thaliana PE=2 SV=1 52 3e-05 tr|Q0WVX0|Q0WVX0_ARATH Putative uncharacterized protein At2g1255... 52 3e-05 tr|A4FVQ6|A4FVQ6_ARATH At2g12550 OS=Arabidopsis thaliana PE=2 SV=1 52 3e-05 tr|Q25A77|Q25A77_ORYSA H0413E07.5 protein OS=Oryza sativa GN=H04... 50 1e-04 tr|A2XY68|A2XY68_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|Q7XTE5|Q7XTE5_ORYSJ OSJNBa0033G05.14 protein (Putative unchar... 49 2e-04 tr|Q0J9L6|Q0J9L6_ORYSJ Os04g0644300 protein (Fragment) OS=Oryza ... 49 2e-04 tr|Q6CM86|Q6CM86_KLULA KLLA0E22133p OS=Kluyveromyces lactis GN=K... 36 1.5 tr|Q5ZI45|Q5ZI45_CHICK Putative uncharacterized protein OS=Gallu... 36 1.9 tr|Q3M1K4|Q3M1K4_ANAVT Hemolysin-type calcium-binding region OS=... 36 1.9 tr|Q1GFX4|Q1GFX4_SILST Putative uncharacterized protein OS=Silic... 35 4.3 tr|A2ZKI1|A2ZKI1_ORYSI Putative uncharacterized protein OS=Oryza... 35 4.3 tr|B1Q0D4|B1Q0D4_DANRE Ovary oogenesis-like protein OS=Danio rer... 34 5.6 tr|A5EN73|A5EN73_BRASB Putative uncharacterized protein OS=Brady... 34 7.4 tr|B3LRY0|B3LRY0_YEAS1 UV excision repair protein RAD23 OS=Sacch... 34 7.4 tr|B2WE85|B2WE85_PYRTR Putative uncharacterized protein OS=Pyren... 34 7.4 tr|A7TSH9|A7TSH9_VANPO Putative uncharacterized protein OS=Vande... 34 7.4 tr|A6ZQR3|A6ZQR3_YEAS7 Radiation sensitive protein OS=Saccharomy... 34 7.4 tr|Q6N5C7|Q6N5C7_RHOPA Phosphoribosylglycinamide formyltransfera... 33 9.6 tr|B3Q9R0|B3Q9R0_RHOPT Phosphoribosylglycinamide formyltransfera... 33 9.6
>tr|A9TT89|A9TT89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_150235 PE=4 SV=1 Length = 571
Score = 77.4 bits (189), Expect = 6e-13 Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%) Frame = +2
Query: 11 SIEELLAMGFTRDQVDQILQTAFSVDDAITLLLRG--DGDTEAMANGFAQDSFPIEVAES 184 ++ EL++MGF++D+ + L+ + A+ L++ D +E Q + A + Sbjct: 442 ALAELMSMGFSKDKAKKALRGSTDTTQALERLIQDLQDHTSEGPETESKQRESEVSAASA 501
Query: 185 SSNVLTSGGIQTALEESEG--QRDFEMEEDIATKLTGDPLAEYDIDVHKEGEAILAYLEL 358 S L I S RD EMEE+IA ++TGDP AEYDI+V KEG+AI YL L Sbjct: 502 SDAALLDNSISPESPASTDLDPRDEEMEEEIAREITGDPFAEYDIEVSKEGDAISEYLAL 561
Query: 359 LNSKSTP 379 LNS P Sbjct: 562 LNSNCAP 568
>tr|A7QS43|A7QS43_VITVI Chromosome undetermined scaffold_155, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00005668001 PE=4 SV=1 Length = 552
Score = 69.3 bits (168), Expect = 2e-10 Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 6/128 (4%) Frame = +2
Query: 2 NNESIEELLAMGFTRDQVDQILQTAFSVDDAITLLLRGDGDTEAMA----NGFAQDSFPI 169 N +IEEL++MGF R +V +QT + + A+ LL G T A N S P Sbjct: 417 NEAAIEELISMGFERSEVVTAVQTFGTKEQALNALL-GTAKTNPTAPDDSNVIPSGSMPD 475
Query: 170 EVAESS-SNVLTSGGIQTALEESEGQRDFEMEEDIATKL-TGDPLAEYDIDVHKEGEAIL 343 E + S S V +GG +A + E RD EME+++A L GD ++YD++V KEGEAI Sbjct: 476 EASLGSWSEVGDAGGSSSAKKGEE--RDLEMEDELAEDLRNGDAFSDYDMEVTKEGEAIN 533
Query: 344 AYLELLNS 367 YL LL S Sbjct: 534 EYLTLLAS 541
>tr|Q8S899|Q8S899_ARATH Putative uncharacterized protein At2g12550 OS=Arabidopsis thaliana GN=At2g12550 PE=2 SV=1 Length = 538
Score = 51.6 bits (122), Expect = 3e-05 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 24/148 (16%) Frame = +2
Query: 11 SIEELLAMGFTRDQVDQILQTAFSVDDAITLLLRGDGDTEAMANGFAQDSFPIEVAESSS 190 S+ EL++MGF R + L+ S +D I LL + ++AN + I S++ Sbjct: 396 SVAELVSMGFERGKATSALEAGGSREDTIQRLL-----SASVANPGTTTTSVINATSSTN 450
Query: 191 NVLTS-----GGIQ------------------TALEESEGQRDFEMEEDIATKLTG-DPL 298 NV GG + T+ + E +RD E+E++IA ++ D L Sbjct: 451 NVGAESSGFGGGAEQDSEMKDETTDDIANRASTSSDGMEEERDSEIEDEIADEIARVDAL 510
Query: 299 AEYDIDVHKEGEAILAYLELLNSKSTPC 382 + YDI++ KE EAI YL +L++ C Sbjct: 511 SAYDINLDKEIEAINEYLAMLDASQESC 538
>tr|Q500V3|Q500V3_ARATH At2g12550 OS=Arabidopsis thaliana PE=2 SV=1 Length = 562
Score = 51.6 bits (122), Expect = 3e-05 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 24/148 (16%) Frame = +2
Query: 11 SIEELLAMGFTRDQVDQILQTAFSVDDAITLLLRGDGDTEAMANGFAQDSFPIEVAESSS 190 S+ EL++MGF R + L+ S +D I LL + ++AN + I S++ Sbjct: 420 SVAELVSMGFERGKATSALEAGGSREDTIQRLL-----SASVANPGTTTTSVINATSSTN 474
Query: 191 NVLTS-----GGIQ------------------TALEESEGQRDFEMEEDIATKLTG-DPL 298 NV GG + T+ + E +RD E+E++IA ++ D L Sbjct: 475 NVGAESSGFGGGAEQDSEMKDETTDDIANRASTSSDGMEEERDSEIEDEIADEIARVDAL 534
Query: 299 AEYDIDVHKEGEAILAYLELLNSKSTPC 382 + YDI++ KE EAI YL +L++ C Sbjct: 535 SAYDINLDKEIEAINEYLAMLDASQESC 562
>tr|Q0WVX0|Q0WVX0_ARATH Putative uncharacterized protein At2g12550 OS=Arabidopsis thaliana GN=At2g12550 PE=2 SV=1 Length = 270
Score = 51.6 bits (122), Expect = 3e-05 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 24/148 (16%) Frame = +2
Query: 11 SIEELLAMGFTRDQVDQILQTAFSVDDAITLLLRGDGDTEAMANGFAQDSFPIEVAESSS 190 S+ EL++MGF R + L+ S +D I LL + ++AN + I S++ Sbjct: 128 SVAELVSMGFERGKATSALEAGGSREDTIQRLL-----SASVANPGTTTTSVINATSSTN 182
Query: 191 NVLTS-----GGIQ------------------TALEESEGQRDFEMEEDIATKLTG-DPL 298 NV GG + T+ + E +RD E+E++IA ++ D L Sbjct: 183 NVGAESSGFGGGAEQDSEMKDETTDDIANRASTSSDGMEEERDSEIEDEIADEIARVDAL 242
Query: 299 AEYDIDVHKEGEAILAYLELLNSKSTPC 382 + YDI++ KE EAI YL +L++ C Sbjct: 243 SAYDINLDKEIEAINEYLAMLDASQESC 270
>tr|A4FVQ6|A4FVQ6_ARATH At2g12550 OS=Arabidopsis thaliana PE=2 SV=1 Length = 562
Score = 51.6 bits (122), Expect = 3e-05 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 24/148 (16%) Frame = +2
Query: 11 SIEELLAMGFTRDQVDQILQTAFSVDDAITLLLRGDGDTEAMANGFAQDSFPIEVAESSS 190 S+ EL++MGF R + L+ S +D I LL + ++AN + I S++ Sbjct: 420 SVAELVSMGFERGKATSALEAGGSREDTIQRLL-----SASVANPGTTTTSVINATSSTN 474
Query: 191 NVLTS-----GGIQ------------------TALEESEGQRDFEMEEDIATKLTG-DPL 298 NV GG + T+ + E +RD E+E++IA ++ D L Sbjct: 475 NVGAESSGFGGGAEQDSEMKDETTDDIANRASTSSDGMEEERDSEIEDEIADEIARVDAL 534
Query: 299 AEYDIDVHKEGEAILAYLELLNSKSTPC 382 + YDI++ KE EAI YL +L++ C Sbjct: 535 SAYDINLDKEIEAINEYLAMLDASQESC 562
>tr|Q25A77|Q25A77_ORYSA H0413E07.5 protein OS=Oryza sativa GN=H0413E07.5 PE=4 SV=1 Length = 566
Score = 50.1 bits (118), Expect = 1e-04 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 19/101 (18%) Frame = +2
Query: 122 DTEA-MANGFAQDS--FPIEVAESSSNVLTSGGIQTALEESEGQ---------------- 244 DT A + +G A +S P+ E+++NV +T E E Sbjct: 464 DTSANVPDGSAMESHVLPVINEEAANNVEAVNDGETVNHEEEDMSEESAEGEEEANPPSV 523
Query: 245 RDFEMEEDIATKLTGDPLAEYDIDVHKEGEAILAYLELLNS 367 RD ME ++A ++TGD L +YDIDV EG+AI YL LL+S Sbjct: 524 RDVAMENELAHEMTGDALDDYDIDVSNEGQAISEYLSLLDS 564
>tr|A2XY68|A2XY68_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17653 PE=4 SV=1 Length = 566
Score = 50.1 bits (118), Expect = 1e-04 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 19/101 (18%) Frame = +2
Query: 122 DTEA-MANGFAQDS--FPIEVAESSSNVLTSGGIQTALEESEGQ---------------- 244 DT A + +G A +S P+ E+++NV +T E E Sbjct: 464 DTSANVPDGSAMESHVLPVINEEAANNVEAVNDGETVNHEEEDMSEESAEGEEEANPPSV 523
Query: 245 RDFEMEEDIATKLTGDPLAEYDIDVHKEGEAILAYLELLNS 367 RD ME ++A ++TGD L +YDIDV EG+AI YL LL+S Sbjct: 524 RDVAMENELAHEMTGDALDDYDIDVSNEGQAISEYLSLLDS 564
>tr|Q7XTE5|Q7XTE5_ORYSJ OSJNBa0033G05.14 protein (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=OSJNBa0033G05.14 PE=4 SV=2 Length = 564
Score = 49.3 bits (116), Expect = 2e-04 Identities = 23/41 (56%), Positives = 30/41 (73%) Frame = +2
Query: 245 RDFEMEEDIATKLTGDPLAEYDIDVHKEGEAILAYLELLNS 367 RD ME ++A ++TGD L +YDIDV EG+AI YL LL+S Sbjct: 522 RDVAMENELAHEMTGDALDDYDIDVSNEGQAISEYLSLLDS 562
>tr|Q0J9L6|Q0J9L6_ORYSJ Os04g0644300 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0644300 PE=4 SV=1 Length = 175
Score = 49.3 bits (116), Expect = 2e-04 Identities = 23/41 (56%), Positives = 30/41 (73%) Frame = +2
Query: 245 RDFEMEEDIATKLTGDPLAEYDIDVHKEGEAILAYLELLNS 367 RD ME ++A ++TGD L +YDIDV EG+AI YL LL+S Sbjct: 133 RDVAMENELAHEMTGDALDDYDIDVSNEGQAISEYLSLLDS 173
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