DK955707 |
Clone id |
TST39A01NGRL0023_N04 |
Library |
TST39 |
Length |
588 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_N04. 5' end sequence. |
Accession |
DK955707 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL73Contig1 |
Sequence |
AGGAACGTGTCTGGAGCTCGGCCTTTCTCCGTTCTGCAGAGATGCAGATCTTCGTGAAGA CATTAACTGGCAAGACCTTCACTCTCGAGGTTGAGTCCTCCGATACTATCGACAATGTGA TAGACTAACATCTCAGGACTAAGGAGGGTATATCCCTCCTGATCAGCAGCTGTCTCATTT TTGCCGGGAAGCAGCTTGAAGATAGGACTGAACACTGGCCGCGTTTTACACCTCAGAAGA GTCCACCCTCCACCTTGTGCTCAGGTTGAGAGGTGGTGCCAAGAAGAGAAAGAAGAAGAC TTACACCAAGCCCAAAAAGCTCAAGCATAAGAAGAAGAAGGTAAAGCTTGCAGTGCTCCA ATTCTACAAGGTGGATGACTCTGGGAAGGTGCAACGACTTCGGAAGGAGTGTCCAAATGC TGAATGTGGAGCTGGAACTTTCATGGCCAATCATCATGATCGCCACTACTGCGGCAAGTG TGGCCTGACCTACGTCTATCAGAAGGCTTGATGTATGTGACTTTCAAAGTCATGTTTTGG ATGTAGAATGAGCAGCTATTGCTCTGCTGAATTTAACTTTTTGAACCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P62981 |
Definition |
sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a OS=Solanum tuberosum |
Align length |
54 |
Score (bit) |
114.0 |
E-value |
3.0e-25 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
O04829 |
Definition |
tr|O04829|O04829_SOLTU Ubiquitin extension protein OS=Solanum tuberosum |
Align length |
119 |
Score (bit) |
143.0 |
E-value |
6.0e-33 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955707|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_N04, 5' (588 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|O04829|O04829_SOLTU Ubiquitin extension protein OS=Solanum tu... 143 6e-33 tr|B7FGN8|B7FGN8_MEDTR Putative uncharacterized protein OS=Medic... 143 6e-33 tr|B5LWQ7|B5LWQ7_ZIZJJ Ubiquitin extensive-like protein OS=Zizip... 143 6e-33 tr|A9P863|A9P863_POPTR Putative uncharacterized protein OS=Popul... 143 6e-33 tr|A7Q059|A7Q059_VITVI Chromosome chr8 scaffold_41, whole genome... 143 6e-33 tr|A5B102|A5B102_VITVI Putative uncharacterized protein OS=Vitis... 143 6e-33 tr|A5AGV0|A5AGV0_VITVI Putative uncharacterized protein (Chromos... 143 6e-33 tr|A9XB15|A9XB15_HEVBR Ubiquitin extension protein OS=Hevea bras... 143 8e-33 tr|Q84XC3|Q84XC3_MALDO Ubiquitin/ribosomal fusion protein OS=Mal... 142 1e-32 tr|Q06H21|Q06H21_ARAHY Ubiquitin/ribosomal protein S27a OS=Arach... 142 1e-32 tr|A5C8S5|A5C8S5_VITVI Putative uncharacterized protein (Chromos... 142 1e-32 tr|Q45FL8|Q45FL8_TOBAC Ubiquitin extension protein OS=Nicotiana ... 142 2e-32 tr|Q2QDG1|Q2QDG1_GOSHI Ubiquitin extension protein OS=Gossypium ... 142 2e-32 tr|Q6UCJ3|Q6UCJ3_CUCSA Ubiquitin extension protein OS=Cucumis sa... 141 2e-32 tr|Q5EC25|Q5EC25_NICBE Ubiquitin/s27a 40S ribosomal protein OS=N... 141 2e-32 tr|O49906|O49906_TOBAC Ubiquitin extension protein OS=Nicotiana ... 141 2e-32 tr|A9T8M3|A9T8M3_PHYPA Predicted protein OS=Physcomitrella paten... 141 2e-32 tr|A0MKC8|A0MKC8_CAPAN Ubiquitin extension protein OS=Capsicum a... 141 2e-32 tr|B7FH93|B7FH93_MEDTR Putative uncharacterized protein OS=Medic... 141 3e-32 tr|B3TLP8|B3TLP8_ELAGV Ubiquitin extension protein-like protein ... 141 3e-32 tr|A9P8M2|A9P8M2_POPTR Putative uncharacterized protein OS=Popul... 141 3e-32 tr|Q8W217|Q8W217_PYRCO Ubiquitin extension protein OS=Pyrus comm... 140 5e-32 tr|A9YTY9|A9YTY9_SOLTU Putative ubiquitin extension protein OS=S... 140 5e-32 tr|A9S8F4|A9S8F4_PHYPA Predicted protein OS=Physcomitrella paten... 140 5e-32 tr|A9RJI9|A9RJI9_PHYPA Predicted protein OS=Physcomitrella paten... 140 5e-32 tr|Q9FUL5|Q9FUL5_PRUAV Ubiquitin/ribosomal protein 27a OS=Prunus... 139 9e-32 tr|B8LKJ2|B8LKJ2_PICSI Putative uncharacterized protein OS=Picea... 139 1e-31 tr|Q0MW35|Q0MW35_9ROSA Ubiquitin extension protein OS=Morus bomb... 137 4e-31 tr|Q5I6U1|Q5I6U1_NICBE Ubiquitin/s27a 40s ribosomal protein OS=N... 131 2e-29 tr|Q9ARZ9|Q9ARZ9_ORYSJ cDNA clone:001-043-B08, full insert seque... 130 5e-29
>tr|O04829|O04829_SOLTU Ubiquitin extension protein OS=Solanum tuberosum PE=2 SV=1 Length = 156
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|B7FGN8|B7FGN8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 155
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 HRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|B5LWQ7|B5LWQ7_ZIZJJ Ubiquitin extensive-like protein OS=Ziziphus jujuba GN=UBQ PE=2 SV=1 Length = 156
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|A9P863|A9P863_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 156
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|A7Q059|A7Q059_VITVI Chromosome chr8 scaffold_41, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027151001 PE=4 SV=1 Length = 156
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 61.6 bits (148), Expect = 3e-08 Identities = 38/54 (70%), Positives = 40/54 (74%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDN ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNA-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|A5B102|A5B102_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036195 PE=4 SV=1 Length = 156
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 61.2 bits (147), Expect = 4e-08 Identities = 38/54 (70%), Positives = 40/54 (74%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDN ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDN-XKAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|A5AGV0|A5AGV0_VITVI Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00028185001 PE=4 SV=1 Length = 156
Score = 143 bits (361), Expect = 6e-33 Identities = 77/119 (64%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|A9XB15|A9XB15_HEVBR Ubiquitin extension protein OS=Hevea brasiliensis GN=UEP1 PE=2 SV=1 Length = 156
Score = 143 bits (360), Expect = 8e-33 Identities = 76/119 (63%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LA+LQFYKVDDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 KKKVKLAILQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|Q84XC3|Q84XC3_MALDO Ubiquitin/ribosomal fusion protein OS=Malus domestica PE=2 SV=1 Length = 156
Score = 142 bits (359), Expect = 1e-32 Identities = 76/119 (63%), Positives = 81/119 (68%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDNRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LAVLQFYKVDDSG+VQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 HKKVKLAVLQFYKVDDSGQVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 61.6 bits (148), Expect = 3e-08 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSD+IDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDSIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
>tr|Q06H21|Q06H21_ARAHY Ubiquitin/ribosomal protein S27a OS=Arachis hypogaea PE=2 SV=1 Length = 155
Score = 142 bits (359), Expect = 1e-32 Identities = 75/119 (63%), Positives = 80/119 (67%) Frame = +2
Query: 152 IPPDQQLSHFCREAA*R*D*TLAAFYTSEESTLHLVLRLRGGAXXXXXXXXXXXXXXXXX 331 IPPDQQ F + TLA + +ESTLHLVLRLRGGA Sbjct: 36 IPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 332 XXXXXLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHHDRHYCGKCGLTYVYQKA 508 LA+LQFYK+DDSGKVQRLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQKA Sbjct: 95 HKKVKLAILQFYKIDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/54 (72%), Positives = 41/54 (75%) Frame = +3
Query: 42 MQIFVKTLTGKTFTLEVESSDTIDNVID*HLRTKEGISLLISSCLIFAGKQLED 203 MQIFVKTLTGKT TLEVESSDTIDNV ++ KEGI LIFAGKQLED Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KAKIQDKEGIP-PDQQRLIFAGKQLED 52
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