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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955715
Clone id TST39A01NGRL0023_N12
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_N12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAAAATGTTATGCCTGCCTTCTGAAAGACACATTGTGAGTTCAGTCAAAGTGAGATAGAG
GCAGACGTTGAGCTCGAGAAATTGGGGCTGAGCGGAAGCAAAGAAAGGCTATGTTGGAAC
TTACCTCTTGGTAGCAAGAATCTCGCTTTCTTTTCTGCTTTTATGCTGATTCAGAGATGG
AAGAGCCTCTTCTTGGGTCGTACAAGAGGCCCAGCATCCTGGTCAACCATGGTCTCTTTC
AAATTCCGGAAGAAAGAGAACCTGAGGCGTCCAGGATTATCCCTATAAGTCCTTCCAGTA
TCAAGGAGAAGCTCATATTTGGGTCCCCTGATGCTAGTCCCAAATCCATGTTTGTGTGGC
CTGATAAGTCCAGAGATGGTTCCGAGACGGAAGAGCCTCTTCTTGGGACGTACAAGAGGC
CCAACATCCTGGTCAACCATGGTCTCTTTCAAATTCCGGAAGAAAGAGAGCCTGAGGAGG
CCAGACTTATCCCCATAAGCCCTTCCAATATCAAGGAGAAGCTTCATATTTGGGTCCCCT
GATGC
■■Homology search results ■■ -
sp_hit_id Q9ESW0
Definition sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus
Align length 95
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_N12, 5'
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norveg...    32   2.0  
sp|Q8BYH3|TRM13_MOUSE tRNA guanosine-2'-O-methyltransferase TRM1...    30   5.8  
sp|Q6KHK5|SYA_MYCMO Alanyl-tRNA synthetase OS=Mycoplasma mobile ...    30   9.9  

>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus
            GN=Ddb1 PE=2 SV=1
          Length = 1140

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = -1

Query: 512  DIGRAYGDKSGLLRLSFFRNL--KETMVDQDVGPLVRPKKRLFRLGTISGLIRPHKHGFG 339
            D  R +  + GL  L  F N+    ++V Q++G    P +    LGT++G+I     G  
Sbjct: 986  DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLLGTVNGMI-----GLV 1040

Query: 338  TSIRGPKYELLLDTGRTYR---DNPGRLRFSFFRN 243
            TS+    Y LLLD          + G++  SF+R+
Sbjct: 1041 TSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075


>sp|Q8BYH3|TRM13_MOUSE tRNA guanosine-2'-O-methyltransferase TRM13
           homolog OS=Mus musculus GN=Ccdc76 PE=2 SV=1
          Length = 481

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 151 RKRDSCYQEVSSNIAFLCFRSAPISRAQRLPL 56
           RK+DS ++ +  +I  LC    P+ R  RLP+
Sbjct: 229 RKKDSVFERLQIDIQHLCLNRVPVLREGRLPV 260


>sp|Q6KHK5|SYA_MYCMO Alanyl-tRNA synthetase OS=Mycoplasma mobile
           GN=alaS PE=3 SV=1
          Length = 905

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 28  THCEFSQSEIEADVELEKLGLSGSKERLCWNLPLGSK 138
           TH  F+    E   E+E+LG   ++ERL ++ PL  K
Sbjct: 585 THLVFNALSREFGKEIEQLGSDNNEERLTFDFPLSKK 621
tr_hit_id Q9A6X9
Definition tr|Q9A6X9|Q9A6X9_CAUCR NADH dehydrogenase I, F subunit OS=Caulobacter crescentus
Align length 62
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_N12, 5'
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9A6X9|Q9A6X9_CAUCR NADH dehydrogenase I, F subunit OS=Caulob...    35   2.0  
tr|B8GWU7|B8GWU7_CAUCR NADH-quinone oxidoreductase chain F OS=Ca...    35   2.0  
tr|B7QBM2|B7QBM2_IXOSC Dipeptidyl peptidase III, putative (Fragm...    35   2.0  
tr|B0SZ44|B0SZ44_CAUSK NADH-quinone oxidoreductase, F subunit OS...    34   5.8  
tr|A6QKR2|A6QKR2_ONYPE Na+-driven multidrug efflux pump OS=Onion...    33   7.6  
tr|B8KQ98|B8KQ98_9GAMM MutT/nudix family protein OS=gamma proteo...    33   9.9  
tr|B8C6Q0|B8C6Q0_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.9  
tr|B2WEI9|B2WEI9_PYRTR N-acetylglucosaminyltransferase OS=Pyreno...    33   9.9  
tr|B0E412|B0E412_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.9  

>tr|Q9A6X9|Q9A6X9_CAUCR NADH dehydrogenase I, F subunit
           OS=Caulobacter crescentus GN=CC_1947 PE=4 SV=1
          Length = 439

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +1

Query: 73  LEKLGLSGSKERLCWNLPLGSKNLAFFSAFMLIQRWKSLFLGRTRGPASWSTMVSFKFRK 252
           L   GL G+K+R CWN   G+K++       +I+  K+  L R RG A +ST + + F  
Sbjct: 18  LHDWGLEGAKKRGCWN---GTKDILDAGRDWIIENMKNSGL-RGRGGAGFSTGLKWSFMP 73

Query: 253 KE 258
           KE
Sbjct: 74  KE 75


>tr|B8GWU7|B8GWU7_CAUCR NADH-quinone oxidoreductase chain F
           OS=Caulobacter crescentus NA1000 GN=nuoF PE=4 SV=1
          Length = 439

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +1

Query: 73  LEKLGLSGSKERLCWNLPLGSKNLAFFSAFMLIQRWKSLFLGRTRGPASWSTMVSFKFRK 252
           L   GL G+K+R CWN   G+K++       +I+  K+  L R RG A +ST + + F  
Sbjct: 18  LHDWGLEGAKKRGCWN---GTKDILDAGRDWIIENMKNSGL-RGRGGAGFSTGLKWSFMP 73

Query: 253 KE 258
           KE
Sbjct: 74  KE 75


>tr|B7QBM2|B7QBM2_IXOSC Dipeptidyl peptidase III, putative
           (Fragment) OS=Ixodes scapularis GN=IscW_ISCW013099 PE=4
           SV=1
          Length = 744

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
 Frame = -1

Query: 518 LLDIGRAY---GDKSGLLRLSF--FRNLKETMVDQDVGPLVRPKKRLFRLGTISGLIRPH 354
           L+D GR     GD SGLL+L+    R  +E   +++   ++      F +G++      H
Sbjct: 253 LMDKGRVCFTRGDYSGLLKLTVDNLRKAQECAANENQRQMLGKYIESFTVGSLDA----H 308

Query: 353 KHG--FGTSIRGPKYELLLDTGRTYRDNPG-RLRFSFFRNLKETMVDQDAGPLVRPKKRL 183
           K G  F T  +GP  E  +    TYRD  G R  F  F         +  G LV   + L
Sbjct: 309 KDGSRFWTRDKGPSVESYIGFIETYRDPAGMRGEFEGFVATVNRPQSEKFGALVERAESL 368

Query: 182 FHL*ISIKAEKKARFLLP 129
             L    +  +K +FL P
Sbjct: 369 LRLLPWAQPFEKDQFLRP 386


>tr|B0SZ44|B0SZ44_CAUSK NADH-quinone oxidoreductase, F subunit
           OS=Caulobacter sp. (strain K31) GN=Caul_2828 PE=4 SV=1
          Length = 439

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +1

Query: 73  LEKLGLSGSKERLCWNLPLGSKNLAFFSAFMLIQRWKSLFLGRTRGPASWSTMVSFKFRK 252
           L+  GL G+K+R CWN   G+K++       +I   K+  L R RG A + T + + F  
Sbjct: 18  LQDWGLEGAKKRGCWN---GTKDILDAGRDWIIDNMKNSGL-RGRGGAGFGTGLKWSFMP 73

Query: 253 KE 258
           KE
Sbjct: 74  KE 75


>tr|A6QKR2|A6QKR2_ONYPE Na+-driven multidrug efflux pump OS=Onion
           yellows phytoplasma OY-W GN=norM PE=4 SV=1
          Length = 531

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
 Frame = -1

Query: 506 GRAYGDKSGLLRLSFFRNLKETMVDQ---DVGPLVRPKKRLFRLGTI--SGLIRPHKHGF 342
           G  +GD   L    FF+NL +   DQ   D+     P+ + F LG +  +GL+      F
Sbjct: 389 GLGFGDHLCL----FFKNLGKEKKDQMTLDMFHAKNPEFKSFLLGALLTTGLLTTQLEVF 444

Query: 341 GTSI---RGPKYELLLDTGRTYRDNPGRLRFSFFRNL 240
            T +   + PKY+LLL  GR +      L   FFRN+
Sbjct: 445 STFLIAAKQPKYDLLLSFGRVFLFRIPAL--YFFRNV 479


>tr|B8KQ98|B8KQ98_9GAMM MutT/nudix family protein OS=gamma
           proteobacterium NOR5-3 GN=NOR53_658 PE=4 SV=1
          Length = 198

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 149 SFLLLC*FRDGRASSWVVQEAQHPGQPWS 235
           S  L+   RDG    W+++ A+H G PWS
Sbjct: 24  SVALILQLRDGELGVWMIRRAEHEGDPWS 52


>tr|B8C6Q0|B8C6Q0_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_7503 PE=4 SV=1
          Length = 372

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -1

Query: 245 NLKETM-VDQDAGPLVRPKKRLFHL*ISIKAEKKARFLLPRGKF 117
           NLK+T+  D + GPL R ++R+FHL   +K  K++   L  GKF
Sbjct: 242 NLKDTINKDPNLGPLNREQQRIFHLGRELKTGKRSLQSLGIGKF 285


>tr|B2WEI9|B2WEI9_PYRTR N-acetylglucosaminyltransferase
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_08562 PE=4 SV=1
          Length = 512

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 70  ELEKLGLSGSKERLCWNLPLGSKNLAFFSAFMLIQRWKSLFLGRTRGPASWST 228
           E+++L + G KERL W L  G   + F S+F+    W SL    T     W T
Sbjct: 462 EMDELKIYGRKERLLWRLQYGGLAMFFHSSFI---TWTSLAALLTLKSQQWLT 511


>tr|B0E412|B0E412_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_192371 PE=4 SV=1
          Length = 469

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +3

Query: 321 GSPDASPKSMFVWPDKSRDGSETEEPLLGTYKRPNILVNHGLFQIPEEREPEEARLIPIS 500
           G  +A PKS    P K +  S+T+E   G           G  QIPEE   EEA+ I   
Sbjct: 313 GEEEAEPKSSQATPKKKKASSKTKEKRKGK--------GGGGMQIPEEWPWEEAKKIFKR 364

Query: 501 PSNIKEKL 524
           PS++   L
Sbjct: 365 PSHVHRDL 372