DK955724 |
Clone id |
TST39A01NGRL0023_N21 |
Library |
TST39 |
Length |
434 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_N21. 5' end sequence. |
Accession |
DK955724 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TCGTCATCTCCGTCTATTACCGCCTCGCTCCCGAGCACCCACTTCCAGCTGCGTATGAAG ACTGCTTTGAAGCCCTCCTCTGGCTAGACAAGCAGGCTGAGCTCGGTGGGGAGTTGTCGA GCGAGCCATGGTTAGCAAATCATGCGGATTTGTCAAGGTGCTTCTTGGGTGGAGACAGTG CAGGGGGGACCATAGTGCATTATGTGACTATGCAGGCTATTGGGCATGGATCTTGGAAAT CTGAGCAAGAGGACAAGGGGTTGAAGAATGTGGTTGTGGAAGGCATGCTCCTCTTCCATC CCTTTTTCACATGCGGCCGCAAGGAGGAGGAATCGCGTCCCCCAGCAGGTAGCAGGGAGG CCAAGGTCCTCAAATACATCAATGTCACCAAAGATCACCCTCTTGTGGATCCTCTTAGCC CCAAGTCTCCTCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6L545 |
Definition |
sp|Q6L545|GID1_ORYSJ Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica |
Align length |
150 |
Score (bit) |
62.4 |
E-value |
8.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NQE0 |
Definition |
tr|A9NQE0|A9NQE0_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
152 |
Score (bit) |
108.0 |
E-value |
1.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955724|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_N21, 5' (434 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NQE0|A9NQE0_PICSI Putative uncharacterized protein OS=Picea... 108 1e-22 tr|A9NSG1|A9NSG1_PICSI Putative uncharacterized protein OS=Picea... 107 4e-22 tr|A9P086|A9P086_PICSI Putative uncharacterized protein OS=Picea... 104 2e-21 tr|B6TC25|B6TC25_MAIZE Gibberellin receptor GID1L2 OS=Zea mays P... 102 1e-20 tr|A7P5S5|A7P5S5_VITVI Chromosome chr4 scaffold_6, whole genome ... 102 1e-20 tr|A2YW73|A2YW73_ORYSI Putative uncharacterized protein OS=Oryza... 100 5e-20 tr|Q9ZSE0|Q9ZSE0_PINRA PrMC3 OS=Pinus radiata PE=2 SV=2 99 1e-19 tr|A9P1U1|A9P1U1_PICSI Putative uncharacterized protein OS=Picea... 99 1e-19 tr|Q6ZDG6|Q6ZDG6_ORYSJ Putative PrMC3 OS=Oryza sativa subsp. jap... 98 2e-19 tr|Q0J519|Q0J519_ORYSJ Os08g0475000 protein OS=Oryza sativa subs... 98 2e-19 tr|A9P0Y8|A9P0Y8_PICSI Putative uncharacterized protein OS=Picea... 98 2e-19 tr|B6TRC0|B6TRC0_MAIZE Gibberellin receptor GID1L2 OS=Zea mays P... 97 3e-19 tr|A9NZR6|A9NZR6_PICSI Putative uncharacterized protein OS=Picea... 97 4e-19 tr|B6TIA5|B6TIA5_MAIZE Gibberellin receptor GID1L2 OS=Zea mays P... 96 7e-19 tr|B4FVE4|B4FVE4_MAIZE Putative uncharacterized protein OS=Zea m... 96 7e-19 tr|A9TRG0|A9TRG0_PHYPA GLP6 GID1-like protein OS=Physcomitrella ... 96 9e-19 tr|A9NZ91|A9NZ91_PICSI Putative uncharacterized protein OS=Picea... 96 9e-19 tr|A7P5T0|A7P5T0_VITVI Chromosome chr4 scaffold_6, whole genome ... 95 2e-18 tr|A7P5S7|A7P5S7_VITVI Chromosome chr4 scaffold_6, whole genome ... 95 2e-18 tr|A5B056|A5B056_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18 tr|Q67J09|Q67J09_ORYSJ Os09g0460400 protein OS=Oryza sativa subs... 95 2e-18 tr|A2YL56|A2YL56_ORYSI Putative uncharacterized protein OS=Oryza... 95 2e-18 tr|Q6ZDG3|Q6ZDG3_ORYSJ Os08g0475400 protein OS=Oryza sativa subs... 94 3e-18 tr|A9NU19|A9NU19_PICSI Putative uncharacterized protein OS=Picea... 94 3e-18 tr|Q67IZ3|Q67IZ3_ORYSJ Os09g0462200 protein OS=Oryza sativa subs... 94 4e-18 tr|B8BCQ7|B8BCQ7_ORYSI Putative uncharacterized protein OS=Oryza... 94 4e-18 tr|B8BBM5|B8BBM5_ORYSI Putative uncharacterized protein OS=Oryza... 94 4e-18 tr|A9NX23|A9NX23_PICSI Putative uncharacterized protein OS=Picea... 93 6e-18 tr|A9NQD3|A9NQD3_PICSI Putative uncharacterized protein OS=Picea... 93 6e-18 tr|A9NP07|A9NP07_PICSI Putative uncharacterized protein OS=Picea... 93 8e-18
>tr|A9NQE0|A9NQE0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 335
Score = 108 bits (270), Expect = 1e-22 Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Frame = +3
Query: 6 ISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSAG 185 +SV YR APEH LPAAY+DCF L WL +QAE+ + +PWLA+HAD S+ F+ GDSAG Sbjct: 118 VSVEYRRAPEHRLPAAYDDCFGVLEWLARQAEVAEGVPIDPWLASHADFSKVFVAGDSAG 177
Query: 186 GTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRKEEESRPPAGSREAK 365 G IVH V ++A +W + ++G +L HPFF G + E G+ Sbjct: 178 GNIVHQVCIRASAR-NW---------DGLCLQGAILVHPFF-AGEERIECELGTGAEVEG 226
Query: 366 VLKYIN----------VTKDHPLVDPLSPKSP 431 +K ++ +DHP +P P+SP Sbjct: 227 FVKLVDGIWSISLPEGADRDHPFCNPDGPRSP 258
>tr|A9NSG1|A9NSG1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 336
Score = 107 bits (266), Expect = 4e-22 Identities = 60/151 (39%), Positives = 83/151 (54%), Gaps = 10/151 (6%) Frame = +3
Query: 6 ISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSAG 185 +SV YR APEH LPAAY+DCF L WL +QAE ++ +PWLA+HAD S+ F+ GDSAG Sbjct: 119 VSVEYRRAPEHRLPAAYDDCFGVLEWLVRQAEAAEGVTIDPWLASHADFSKVFVAGDSAG 178
Query: 186 GTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRKEEESRPPAGSREAK 365 G IVH V ++A +W + ++G +L HPFF G + E G+ Sbjct: 179 GNIVHQVCIRASAR-NW---------DGLCLQGAILVHPFF-AGEERIECELGTGAEVEG 227
Query: 366 VLKYIN----------VTKDHPLVDPLSPKS 428 +LK ++ +DHP +P P S Sbjct: 228 ILKVVDGIWSISLPEGADRDHPFCNPDGPHS 258
>tr|A9P086|A9P086_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 338
Score = 104 bits (260), Expect = 2e-21 Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 9/151 (5%) Frame = +3
Query: 6 ISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSAG 185 +SV YR APEH LPAAY+DCF L WLD+QA + +S +PWLA+HAD S+ FL GDSAG Sbjct: 118 LSVDYRRAPEHRLPAAYDDCFGVLEWLDRQAMVLEGVSVDPWLASHADFSKVFLAGDSAG 177
Query: 186 GTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRK-----EEESRPPAG 350 I+H V ++A G +W + ++G +L HPFF + E+ A Sbjct: 178 ANILHQVGIRASGR-NW---------DGLCLQGAILVHPFFGGAERIGCELLAEAEVDAF 227
Query: 351 SREAKVLKYINV----TKDHPLVDPLSPKSP 431 + + I++ +DHP +P+ P+SP Sbjct: 228 NTMTDAIWSISLPAEADRDHPFCNPVGPRSP 258
>tr|B6TC25|B6TC25_MAIZE Gibberellin receptor GID1L2 OS=Zea mays PE=2 SV=1 Length = 327
Score = 102 bits (254), Expect = 1e-20 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 5/149 (3%) Frame = +3
Query: 3 VISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSA 182 V+SV YRLAPEHP+PAAY D +EAL W+ G+ + +PW+A+HAD SR FLGG+SA Sbjct: 114 VVSVEYRLAPEHPVPAAYADSWEALAWVISHLGPAGDGARDPWIASHADFSRLFLGGESA 173
Query: 183 GGTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRK--EEESRPPAGSR 356 G I H++ M+A G + + G+++ HP+F K ++ P Sbjct: 174 GSNIAHHMAMRAAAEGLAHGAR---------IRGLVMIHPYFLGTDKVPSDDLSPEVRES 224
Query: 357 EAKVLKYINVT---KDHPLVDPLSPKSPP 434 + +++ T +D PL++P +PP Sbjct: 225 LGSLWRFMCPTTTGEDDPLINPFVDGAPP 253
>tr|A7P5S5|A7P5S5_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032642001 PE=4 SV=1 Length = 311
Score = 102 bits (254), Expect = 1e-20 Identities = 57/128 (44%), Positives = 80/128 (62%) Frame = +3
Query: 3 VISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSA 182 V+SV YRLAPE+ LP AY+DC+ +L WL +Q +SSEPWL ADLSR FL GDSA Sbjct: 103 VLSVDYRLAPENRLPIAYDDCYSSLEWLSRQ------VSSEPWL-ERADLSRVFLSGDSA 155
Query: 183 GGTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRKEEESRPPAGSREA 362 GG IVH V ++ I +++ V ++G+L+ HPFF G +E + A EA Sbjct: 156 GGNIVHNVALRTI---------QEQSCDQVKIKGLLIIHPFF--GSEERTEKERASGGEA 204
Query: 363 KVLKYINV 386 +VL ++++ Sbjct: 205 EVLTWLDL 212
>tr|A2YW73|A2YW73_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29583 PE=4 SV=1 Length = 329
Score = 100 bits (248), Expect = 5e-20 Identities = 60/143 (41%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Frame = +3
Query: 6 ISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSAG 185 +SV YRLAPEHPLPAAY+D + AL W G EPWLA H D +R F+ GDSAG Sbjct: 109 VSVDYRLAPEHPLPAAYDDAWAALRWTVASCSASG--GPEPWLAEHGDAARIFVAGDSAG 166
Query: 186 GTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGR--KEEESRPPAGSRE 359 I H VTM+A +D +EGM+L HPFF G E + P R Sbjct: 167 ANIAHNVTMRA---------GKDGLPGGARIEGMVLLHPFFRGGELVPSERADPELPRRA 217
Query: 360 AKVLKYINVTK---DHPLVDPLS 419 K ++ + DHP ++PLS Sbjct: 218 EKSWGFMCAGRYGIDHPFINPLS 240
>tr|Q9ZSE0|Q9ZSE0_PINRA PrMC3 OS=Pinus radiata PE=2 SV=2 Length = 319
Score = 99.0 bits (245), Expect = 1e-19 Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 10/152 (6%) Frame = +3
Query: 3 VISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSA 182 VISV YRLAPEH LPAAY+DCF+A+ W+ A GG+ +EPWL HAD RCFL G+SA Sbjct: 107 VISVDYRLAPEHRLPAAYDDCFDAVEWV---ASGGGK--AEPWLDAHADYGRCFLAGESA 161
Query: 183 GGTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRKEEESRPPAGSREA 362 GG I H V GS ++Q+ LK + G+++ HP+F + E + AG +A Sbjct: 162 GGNIAHVV-------GSRTADQDLGPLK---IRGLIVIHPYFGSEERIECEKVAAGD-DA 210
Query: 363 KVLKYINV----------TKDHPLVDPLSPKS 428 L+ ++ +D+P +P P+S Sbjct: 211 AALELNDLFWRLALPPGSDRDYPTCNPRGPRS 242
>tr|A9P1U1|A9P1U1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 327
Score = 98.6 bits (244), Expect = 1e-19 Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 9/152 (5%) Frame = +3
Query: 3 VISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSA 182 V+SV YRLAPEH LPAAY+DC AL W++ A GG+ +PWL ++AD S +L GDSA Sbjct: 108 VVSVAYRLAPEHRLPAAYDDCISALQWVNSHAGDGGDFKHDPWLESYADFSAVYLMGDSA 167
Query: 183 GGTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGRKE-EESRPPAGS-- 353 GG I H+V G +W + ++G +L PFF ++ ES P + Sbjct: 168 GGNIAHHVVALRGGVEAWNP---------IKLKGSILVEPFFGAEQRTLSESECPCDAVL 218
Query: 354 ----REA--KVLKYINVTKDHPLVDPLSPKSP 431 +A ++ + +DHP P SP +P Sbjct: 219 NLELSDACWRLSLPVGSDRDHPFSYPCSPAAP 250
>tr|Q6ZDG6|Q6ZDG6_ORYSJ Putative PrMC3 OS=Oryza sativa subsp. japonica GN=P0451G12.19 PE=4 SV=1 Length = 329
Score = 97.8 bits (242), Expect = 2e-19 Identities = 59/143 (41%), Positives = 74/143 (51%), Gaps = 5/143 (3%) Frame = +3
Query: 6 ISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSAG 185 +SV YRLAPEHPLPAAY+D + AL W G EPWLA H D +R F+ GDSAG Sbjct: 109 VSVDYRLAPEHPLPAAYDDAWAALRWTVASCSASG--GPEPWLAEHGDAARIFVAGDSAG 166
Query: 186 GTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGR--KEEESRPPAGSRE 359 I H VTM+A +D +EGM+L HPFF G E P R Sbjct: 167 ANIAHNVTMRA---------GKDGLPGGARIEGMVLLHPFFRGGELMPSERVDPELPRRA 217
Query: 360 AKVLKYINVTK---DHPLVDPLS 419 + ++ + DHP ++PLS Sbjct: 218 ERSWGFMCAGRYGIDHPFINPLS 240
>tr|Q0J519|Q0J519_ORYSJ Os08g0475000 protein OS=Oryza sativa subsp. japonica GN=Os08g0475000 PE=4 SV=1 Length = 379
Score = 97.8 bits (242), Expect = 2e-19 Identities = 59/143 (41%), Positives = 74/143 (51%), Gaps = 5/143 (3%) Frame = +3
Query: 6 ISVYYRLAPEHPLPAAYEDCFEALLWLDKQAELGGELSSEPWLANHADLSRCFLGGDSAG 185 +SV YRLAPEHPLPAAY+D + AL W G EPWLA H D +R F+ GDSAG Sbjct: 159 VSVDYRLAPEHPLPAAYDDAWAALRWTVASCSASG--GPEPWLAEHGDAARIFVAGDSAG 216
Query: 186 GTIVHYVTMQAIGHGSWKSEQEDKGLKNVVVEGMLLFHPFFTCGR--KEEESRPPAGSRE 359 I H VTM+A +D +EGM+L HPFF G E P R Sbjct: 217 ANIAHNVTMRA---------GKDGLPGGARIEGMVLLHPFFRGGELMPSERVDPELPRRA 267
Query: 360 AKVLKYINVTK---DHPLVDPLS 419 + ++ + DHP ++PLS Sbjct: 268 ERSWGFMCAGRYGIDHPFINPLS 290
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