DK955728 |
Clone id |
TST39A01NGRL0023_O01 |
Library |
TST39 |
Length |
463 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O01. 5' end sequence. |
Accession |
DK955728 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL39Contig1 |
Sequence |
GCGCAACACAGATGTGGCAGGTCCTGCAGGGTCACTGGCAGCCGCAGGCCTTGTGGTAAT TTTGTCAGTGTGCCTCACCATCTATGGAGTGGCCACCTTCAAAGAGGGCGCCCCCTCCCT TGCACCTTATCTCACTCTCACTGGCCGTCGTTTTACAACTTCGAAGCTGCAAACTGCGGA AGGATGGGCCAACTTCTCCGGTGGATTCTTTTTTGGCGGCCTTTCTGGTGTTGCCTGGGC CTACTTCCTTCTGTACGTCCTGGACCTCCCTTACTTTGTTAAGTAACTGTACCCCTCCAA ACATCCCCAAAGTGTACTGCTTCCCTCCCATGCCCCTGTGAATTTATCTCGGATCATTTG GTGAGGCTGGTGCTCTTGTCTAAGTATTAAAATGTATCAAACTGTAGATTGATTTATTAC TTTTTGATCAGTTTGCTTTGTCAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SUI4 |
Definition |
sp|Q9SUI4|PSAL_ARATH Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana |
Align length |
71 |
Score (bit) |
94.4 |
E-value |
2.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955728|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_O01, 5' (442 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SUI4|PSAL_ARATH Photosystem I reaction center subunit XI, c... 94 2e-19 sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, c... 92 1e-18 sp|P23993|PSAL_HORVU Photosystem I reaction center subunit XI, c... 91 3e-18 sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, c... 86 9e-17 sp|Q30SR5|AROQ_SULDN 3-dehydroquinate dehydratase OS=Sulfurimona... 33 0.41 sp|O15255|CXX1_HUMAN CAAX box protein 1 OS=Homo sapiens GN=FAM12... 31 2.6 sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containi... 31 2.6 sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila mel... 30 3.4 sp|Q5B0M8|ALG10_EMENI Alpha-1,2 glucosyltransferase alg10 OS=Eme... 30 3.4 sp|Q5R6H3|DJB14_PONAB DnaJ homolog subfamily B member 14 OS=Pong... 30 3.4 sp|Q8TBM8|DJB14_HUMAN DnaJ homolog subfamily B member 14 OS=Homo... 30 3.4 sp|Q149L6|DJB14_MOUSE DnaJ homolog subfamily B member 14 OS=Mus ... 30 4.5 sp|Q54ED2|EXO1_DICDI Exonuclease 1 OS=Dictyostelium discoideum G... 30 5.7 sp|P35812|ITC_ALOMA Trypsin/chymotrypsin inhibitor OS=Alocasia m... 29 7.7 sp|Q4FNE2|HISX1_PELUB Histidinol dehydrogenase 1 OS=Pelagibacter... 29 10.0 sp|Q3B316|AROK_PELLD Shikimate kinase OS=Pelodictyon luteolum (s... 29 10.0
>sp|Q9SUI4|PSAL_ARATH Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2 Length = 219
Score = 94.4 bits (233), Expect = 2e-19 Identities = 44/71 (61%), Positives = 51/71 (71%) Frame = +2
Query: 71 CLTIYGVATFKEGAPSLAPYLTLTGRRFTTSKLQTAEGWANXXXXXXXXXXXXVAWAYFL 250 CLTIYG+++FKEG PS+AP LTLTGR+ +LQTA+GWA V WAYFL Sbjct: 149 CLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFL 208
Query: 251 LYVLDLPYFVK 283 LYVLDLPYFVK Sbjct: 209 LYVLDLPYFVK 219
>sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1 Length = 217
Score = 91.7 bits (226), Expect = 1e-18 Identities = 44/71 (61%), Positives = 49/71 (69%) Frame = +2
Query: 71 CLTIYGVATFKEGAPSLAPYLTLTGRRFTTSKLQTAEGWANXXXXXXXXXXXXVAWAYFL 250 CLT+YGVA+F EG PS AP LTLTGR+ T LQTA+GWA V WAYFL Sbjct: 147 CLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFL 206
Query: 251 LYVLDLPYFVK 283 LYVLDLPY+VK Sbjct: 207 LYVLDLPYYVK 217
>sp|P23993|PSAL_HORVU Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1 Length = 209
Score = 90.5 bits (223), Expect = 3e-18 Identities = 43/71 (60%), Positives = 47/71 (66%) Frame = +2
Query: 71 CLTIYGVATFKEGAPSLAPYLTLTGRRFTTSKLQTAEGWANXXXXXXXXXXXXVAWAYFL 250 CLT+YGVA+F EG PS AP LTLTGR+ KLQTAEGW+ WAYFL Sbjct: 139 CLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFL 198
Query: 251 LYVLDLPYFVK 283 LYVLDLPYF K Sbjct: 199 LYVLDLPYFFK 209
>sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1 Length = 216
Score = 85.5 bits (210), Expect = 9e-17 Identities = 39/71 (54%), Positives = 49/71 (69%) Frame = +2
Query: 71 CLTIYGVATFKEGAPSLAPYLTLTGRRFTTSKLQTAEGWANXXXXXXXXXXXXVAWAYFL 250 CLT+YG+A+FKEG PS+AP LTLTGR+ +LQ+A+GWA V WA FL Sbjct: 146 CLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFL 205
Query: 251 LYVLDLPYFVK 283 +YVLDLPY+ K Sbjct: 206 MYVLDLPYYFK 216
>sp|Q30SR5|AROQ_SULDN 3-dehydroquinate dehydratase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=aroQ PE=3 SV=1 Length = 160
Score = 33.5 bits (75), Expect = 0.41 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1
Query: 334 GMGGKQYTLGMFGGVQLLNKVREVQDVQKEVGP 236 G G Y L M G +Q+LN+++ VQ++QK+ P Sbjct: 125 GFGPFGYHLAMVGMIQILNEIKAVQEMQKQQAP 157
>sp|O15255|CXX1_HUMAN CAAX box protein 1 OS=Homo sapiens GN=FAM127A PE=1 SV=1 Length = 209
Score = 30.8 bits (68), Expect = 2.6 Identities = 28/91 (30%), Positives = 30/91 (32%), Gaps = 1/91 (1%) Frame = +3
Query: 63 CQCASPSMEWPPSKRAPPPLHLISLSLAVV-LQLRSCKLRKDGPTSPVDSFLAAFLVLPG 239 C P WPP P P SL L LRSC L + +S Sbjct: 19 CSGEGPLCYWPPPGSPPAPSLRASLPLEPPRCPLRSCSLPRSACLCSRNS---------A 69
Query: 240 PTSFCTSWTSLTLLSNCTPPNIPKVYCFPPM 332 P S C W SL PP P PPM Sbjct: 70 PGSCCRPWASLW----SEPPPSPSSQPAPPM 96
>sp|P0C7A6|BTBDB_DANRE Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 OS=Danio rerio GN=btbd11 PE=4 SV=1 Length = 1012
Score = 30.8 bits (68), Expect = 2.6 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 16/85 (18%) Frame = +3
Query: 33 HWQPQALW*FCQ-CASPSMEW-----PPSKRA----------PPPLHLISLSLAVVLQLR 164 HW+P+AL+ C P MEW PSK PP + I ++LA R Sbjct: 369 HWEPEALYTLCYFMHCPQMEWENPNVEPSKVTLQNERPFLVLPPLMEWIRVALAHAEHRR 428
Query: 165 SCKLRKDGPTSPVDSFLAAFLVLPG 239 S + D D AA L+LPG Sbjct: 429 SFSVDSD------DVRQAARLLLPG 447
>sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila melanogaster GN=Psc PE=1 SV=2 Length = 1601
Score = 30.4 bits (67), Expect = 3.4 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3
Query: 177 RKDGPTSPVDSFLAAFLVLPGPTSFCTSWTSLTLLSNCTPPNIPKVYCFPP 329 ++ P + V LAA L P P+ S L+S TPP +PKV PP Sbjct: 1166 KRQSPPAAVPGHLAAKLPPPPPSKAIPS--PQHLVSRMTPPQLPKVATPPP 1214
>sp|Q5B0M8|ALG10_EMENI Alpha-1,2 glucosyltransferase alg10 OS=Emericella nidulans GN=alg10 PE=3 SV=1 Length = 608
Score = 30.4 bits (67), Expect = 3.4 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +3
Query: 39 QPQALW*FCQCASPSMEWPPSKRAPPPLHLISLSL-AVVLQLRSCKLRKDGPTSPVDSFL 215 Q QA W + +W P PP L+L S ++ A++L LR D P + Sbjct: 48 QAQAYW-----SHQWTQWDPKITTPPGLYLFSYAVCALILLLRGSPEHLDPPALRATNAA 102
Query: 216 AAFLVLP 236 AA ++LP Sbjct: 103 AAAVLLP 109
>sp|Q5R6H3|DJB14_PONAB DnaJ homolog subfamily B member 14 OS=Pongo abelii GN=DNAJB14 PE=2 SV=1 Length = 379
Score = 30.4 bits (67), Expect = 3.4 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -1
Query: 334 GMGGKQYTLGMFGGVQLLNKVR---EVQDVQKEVGPGNTRKAAKK 209 G GGK YT GV +NK + EV V K+ G + +KA +K Sbjct: 86 GEGGKGYTKDQVDGVLSINKCKNCYEVLGVTKDAGDEDLKKAYRK 130
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6SHL1 |
Definition |
tr|B6SHL1|B6SHL1_MAIZE Photosystem I reaction center subunit XI OS=Zea mays |
Align length |
71 |
Score (bit) |
94.4 |
E-value |
3.0e-18 |
Report |
|