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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955729
Clone id TST39A01NGRL0023_O02
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTACGACATCGTTACACACAATACAACAGGCAAATTCCTTCTAGCGCAATTGTGTATTTG
TAGATCTACCCCTCTTGAGATTTAACACAGAGAAGAAGTCAGTGAGTGAGTGCAATGACT
GGCCTTCGATAACCCTGACCGCACTCGCTCTGTGGCTGTGGCTGTGGCTGTGGTTAGCAA
CCCCTTTTGGCTGCCATGTCTCTCCTTGATGGAGCCACCGCTGCCCACCCTTTTGTCCTT
GAGCGTCGCATACACACAGATGTCCAACCACTTCACAGTACTCGTGTCCGCCGACGCTGC
TGCTGCTATGCGAAGGCCAAATTTGACAAGGATGAAGAAGAGCATCTGGCACCCCACCGG
GGTTTTTCCATTCGCGTGCCCACCATTCCAAAGCTTGCGGACATAGAAGCAGCCAGGCGA
CTGCTTGAGGCGGCATTTCAAAACCTTTCTTTTGACATGGCAAGGATACCCATCGATTCA
GCTCTGCAAGGCTTGCCCTTTGGCATACCCAAGCTGTCCATCCCGATGCCAGTCCTTGTA
CTTGACATAACAGGGTTTGTTGTCACTAAGTTGAA
■■Homology search results ■■ -
sp_hit_id O94049
Definition sp|O94049|ACS1_CANAL Acetyl-coenzyme A synthetase 1 OS=Candida albicans
Align length 65
Score (bit) 34.3
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955729|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O02, 5'
         (575 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O94049|ACS1_CANAL Acetyl-coenzyme A synthetase 1 OS=Candida a...    34   0.46 
sp|Q9JJR6|CK016_MOUSE Uncharacterized protein C11orf16 homolog O...    32   1.7  
sp|P50715|DEFR7_MOUSE Defensin-related cryptdin-related sequence...    32   2.3  
sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma...    32   3.0  
sp|Q5TA78|LCE4A_HUMAN Late cornified envelope protein 4A OS=Homo...    31   3.9  
sp|Q5T754|LCE1F_HUMAN Late cornified envelope protein 1F OS=Homo...    30   8.6  
sp|Q5T753|LCE1E_HUMAN Late cornified envelope protein 1E OS=Homo...    30   8.6  
sp|Q5T751|LCE1C_HUMAN Late cornified envelope protein 1C OS=Homo...    30   8.6  
sp|Q5T7P2|LCE1A_HUMAN Late cornified envelope protein 1A OS=Homo...    30   8.6  

>sp|O94049|ACS1_CANAL Acetyl-coenzyme A synthetase 1 OS=Candida
           albicans GN=ACS1 PE=3 SV=1
          Length = 675

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
 Frame = +1

Query: 331 DEEEHLAPHRGFSIRVPTIPKLADIEAARRLLEAAFQNLS----------------FDMA 462
           D E+   P +GF+ R  T P LAD E  ++L + + +N +                FD+A
Sbjct: 13  DHEKMQQPPKGFTERSKTKPNLADFETYQKLYKQSIENPNEFFTQQAKENLDWFKPFDLA 72

Query: 463 RIPID 477
           R P+D
Sbjct: 73  RFPVD 77


>sp|Q9JJR6|CK016_MOUSE Uncharacterized protein C11orf16 homolog
           OS=Mus musculus GN=D7h11orf16 PE=2 SV=2
          Length = 402

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 192 CHVSP*WSHRCPPFCP*AS-HTHRCPTTSQYSCPPTLLLLC 311
           CH S  W   C    P A   THR P  S + CPP L   C
Sbjct: 233 CHSSCLWVPHCSQLGPRAGCTTHRHPLDSSFLCPPCLSCAC 273


>sp|P50715|DEFR7_MOUSE Defensin-related cryptdin-related sequence 7
           OS=Mus musculus GN=Defcr-rs7 PE=2 SV=2
          Length = 91

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 210 WSHRCP--PFCP*ASHTHRCPTTSQYSCPP 293
           W  RCP  P CP  S   RCPT  + +C P
Sbjct: 61  WGRRCPRCPPCPRCSWCPRCPTCPRCNCNP 90


>sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains
           6 OS=Mus musculus GN=Megf6 PE=2 SV=3
          Length = 1572

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 349 PDALLHPCQIWPSHSSSSVGGHEYCEVVGHLCVCDAQGQKGGQ--RWLHQG 203
           PD + HPC        +   GH  C+ V  LC+C+A G +G Q  +W  QG
Sbjct: 869 PDCI-HPC--------NCSAGHGNCDAVSGLCLCEA-GYEGPQCEQWCRQG 909


>sp|Q5TA78|LCE4A_HUMAN Late cornified envelope protein 4A OS=Homo
           sapiens GN=LCE4A PE=2 SV=1
          Length = 99

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 20/69 (28%), Positives = 27/69 (39%)
 Frame = +3

Query: 225 PPFCP*ASHTHRCPTTSQYSCPPTLLLLCEGQI*QG*RRASGTPPGFFHSRAHHSKACGH 404
           PP CP   +  +CP+    SCPP +   C G    G    S    G   S   H ++  H
Sbjct: 13  PPKCPIPKYPPKCPSKCASSCPPPISSCC-GSSSGGCGCCSSEGGGCCLSHHRHHRSHCH 71

Query: 405 RSSQATA*G 431
           R   +   G
Sbjct: 72  RPKSSNCYG 80


>sp|Q5T754|LCE1F_HUMAN Late cornified envelope protein 1F OS=Homo
           sapiens GN=LCE1F PE=2 SV=1
          Length = 118

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 192 CHVSP*WSHRCPPFCP*ASHTHRCPTTSQYSCPP 293
           C   P  + +CPP CP    T +CP      CPP
Sbjct: 10  CQPPPKCTPKCPPKCP----TPKCPPKCPPKCPP 39


>sp|Q5T753|LCE1E_HUMAN Late cornified envelope protein 1E OS=Homo
           sapiens GN=LCE1E PE=2 SV=1
          Length = 118

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 192 CHVSP*WSHRCPPFCP*ASHTHRCPTTSQYSCPP 293
           C   P  + +CPP CP    T +CP      CPP
Sbjct: 10  CQPPPKCTPKCPPKCP----TPKCPPKCPPKCPP 39


>sp|Q5T751|LCE1C_HUMAN Late cornified envelope protein 1C OS=Homo
           sapiens GN=LCE1C PE=2 SV=1
          Length = 118

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 192 CHVSP*WSHRCPPFCP*ASHTHRCPTTSQYSCPP 293
           C   P  + +CPP CP    T +CP      CPP
Sbjct: 10  CQPPPKCTPKCPPKCP----TPKCPPKCPPKCPP 39


>sp|Q5T7P2|LCE1A_HUMAN Late cornified envelope protein 1A OS=Homo
           sapiens GN=LCE1A PE=2 SV=1
          Length = 110

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 192 CHVSP*WSHRCPPFCP*ASHTHRCPTTSQYSCPP 293
           C   P  + +CPP CP    T +CP      CPP
Sbjct: 10  CQPPPKCTPKCPPKCP----TPKCPPKCPPKCPP 39
tr_hit_id B2B7W5
Definition tr|B2B7W5|B2B7W5_PODAN Predicted CDS Pa_2_12485 OS=Podospora anserina
Align length 62
Score (bit) 38.9
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955729|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O02, 5'
         (575 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2B7W5|B2B7W5_PODAN Predicted CDS Pa_2_12485 OS=Podospora ans...    39   0.20 
tr|A2RVB6|A2RVB6_XENLA LOC100037163 protein OS=Xenopus laevis GN...    34   5.0  
tr|A9V294|A9V294_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.5  
tr|Q87JN2|Q87JN2_VIBPA Putative transcription regulator protein ...    33   8.6  
tr|Q1VCS4|Q1VCS4_VIBAL Putative transcription regulator protein ...    33   8.6  
tr|A7JZ61|A7JZ61_9VIBR LysR substrate binding domain protein OS=...    33   8.6  

>tr|B2B7W5|B2B7W5_PODAN Predicted CDS Pa_2_12485 OS=Podospora
           anserina PE=4 SV=1
          Length = 334

 Score = 38.9 bits (89), Expect = 0.20
 Identities = 20/62 (32%), Positives = 24/62 (38%)
 Frame = +2

Query: 344 IWHPTGVFPFACPPFQSLRT*KQPGDCLRRHFKTFLLTWQGYPSIQLCKACPLAYPSCPS 523
           I+HPT + PF                    H  T    W   P +  C +CPL Y SCP 
Sbjct: 80  IFHPTNLAPF--------------------HQTTLREHWATQPRVYTCPSCPLPYSSCPH 119

Query: 524 RC 529
           RC
Sbjct: 120 RC 121


>tr|A2RVB6|A2RVB6_XENLA LOC100037163 protein OS=Xenopus laevis
           GN=LOC100037163 PE=4 SV=1
          Length = 86

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 567 SDNKPCYVKYKDWHRDGQLGYAKGQALQS*IDGYPCHVKRKVLK--CRLKQSPGCFYVRK 394
           +  K CY  Y D+HR  +   +KGQ      D YPC   R+V +  C LK      +V K
Sbjct: 25  NQTKHCYTNYLDYHRCMKAKDSKGQ------DQYPCEWYRRVYRSMCPLK------WVEK 72

Query: 393 LWNGGHANGKTP 358
            W+    NG  P
Sbjct: 73  -WDEQRENGTFP 83


>tr|A9V294|A9V294_MONBE Predicted protein OS=Monosiga brevicollis
           GN=26401 PE=4 SV=1
          Length = 891

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
 Frame = +1

Query: 184 LLAAMSLLDGATA----AHPF-VLERRIHTDVQPLHSTR-VRRRCCCYAKAKFDKDEEEH 345
           +  AM+LL G  A    + P   L  R+HT +QPL S+  + +  C Y +         H
Sbjct: 669 MAVAMALLRGTDAETGASDPADALYARLHTKMQPLESSSDIHKMICKYIR-------NTH 721

Query: 346 LAPHRGFSIRVPTIPKLADIEAARRLLE 429
            A HR + +RV  + ++A    A R  E
Sbjct: 722 AATHRSYKLRVDEVFEIAREGEAERFQE 749


>tr|Q87JN2|Q87JN2_VIBPA Putative transcription regulator protein
           OS=Vibrio parahaemolyticus GN=VPA0216 PE=4 SV=1
          Length = 307

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +1

Query: 382 TIPKLADIEAARRLLEAAFQNLSFDMARIPIDSALQGLPFGIPKLSIPMPVLVLDITGFV 561
           T  KL+  EA  R  E A Q L+     +   S LQG P G  K+++PM   VL I   +
Sbjct: 52  TTRKLSLTEAGERYFEYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLI 111


>tr|Q1VCS4|Q1VCS4_VIBAL Putative transcription regulator protein
           OS=Vibrio alginolyticus 12G01 GN=V12G01_03150 PE=4 SV=1
          Length = 307

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +1

Query: 382 TIPKLADIEAARRLLEAAFQNLSFDMARIPIDSALQGLPFGIPKLSIPMPVLVLDITGFV 561
           T  KL+  EA  R  E A Q L+     +   S LQG P G  K+++PM   VL I   +
Sbjct: 52  TTRKLSLTEAGERYFEYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLI 111


>tr|A7JZ61|A7JZ61_9VIBR LysR substrate binding domain protein
           OS=Vibrio sp. Ex25 GN=VEx25_A0091 PE=4 SV=1
          Length = 307

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +1

Query: 382 TIPKLADIEAARRLLEAAFQNLSFDMARIPIDSALQGLPFGIPKLSIPMPVLVLDITGFV 561
           T  KL+  EA  R  E A Q L+     +   S LQG P G  K+++PM   VL I   +
Sbjct: 52  TTRKLSLTEAGERYFEYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLI 111