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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955730
Clone id TST39A01NGRL0023_O03
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACCTGAGTCAGCTCAAGAATGTGAAAAAAGTGCTACCATTCCCTCTTCTTCCACTTGTA
AAGAACAAGATGTGAAGGAAGGTAGCCCTGGTGTGGACAGTGGCAGTGGTAATACTGAGG
AGTCCTCTCAAGATGGAAAGCTGCCAGATGCCTCTGGCAGTTCTACAGCTGCTTCTGATG
CTGCACCAAAGCTCTCTGCTGCAGCTCCTCCTTACAGTCCTTCCCAAAACACTGTAGCTG
TCACACCTATCAAAGATGGGAAAGACTCACATGCAGGGAGCCATTTGCCTCGCACTTTTT
CCATGCGATCTAACCGTAGCACAACCATGGCTCTTACACCAATTCGCAGACCACCTCGCT
TGTCAGGCGGTCTGGCTGGTTATCACTCTCGATACTATGGCCCACATCCCCGACGGGCCG
CTCCTCCTGTGAATTATCAAAACAGAGCATTGCTGGAAAAGACGGGGGGTGAGAATGGAA
AAGTTGCTGCTTGCATGAACCCCCATGCAAATGCTTATGTCCCTGGAAAAACCATGAACC
CGAATGCAGCAGAGTTCATTCCAGGCAAAGCATGGCAATCTTCTCAACCGGCTAG
■■Homology search results ■■ -
sp_hit_id O60187
Definition sp|O60187|SID4_SCHPO Septation initiation protein sid4 OS=Schizosaccharomyces pombe
Align length 42
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955730|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O03, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60187|SID4_SCHPO Septation initiation protein sid4 OS=Schizo...    32   1.9  
sp|P57718|KPTA_THEAC Probable RNA 2'-phosphotransferase OS=Therm...    32   1.9  
sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Dros...    31   5.4  
sp|Q80Z71|TENN_MOUSE Tenascin-N OS=Mus musculus GN=Tnn PE=2 SV=1       31   5.4  
sp|O86776|TRUA_STRCO tRNA pseudouridine synthase A OS=Streptomyc...    30   7.0  
sp|A3GGT2|YPI2_PICST Type 1 phosphatases regulator YPI2 OS=Pichi...    30   9.2  
sp|O42182|FBLN1_DANRE Fibulin-1 OS=Danio rerio GN=fbln1 PE=2 SV=1      30   9.2  

>sp|O60187|SID4_SCHPO Septation initiation protein sid4
           OS=Schizosaccharomyces pombe GN=sid4 PE=1 SV=1
          Length = 660

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 477 HSHPPSFPAMLCFDNSQEERPVGDVGHSIESDNQPDRLTSEV 352
           HS+ PSFP      +S ++ P G +  +I   NQ D L  EV
Sbjct: 155 HSNSPSFPPSQSHTSSYDQSPKGQLRDNISVPNQQDGLDPEV 196


>sp|P57718|KPTA_THEAC Probable RNA 2'-phosphotransferase
           OS=Thermoplasma acidophilum GN=kptA PE=3 SV=2
          Length = 235

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -2

Query: 225 GKDCKEELQQRALVQHQKQL*NCQRHLAAFHLERTPQYYHCHCPHQGYLPSH---LVLYK 55
           G++C    +   ++ +++++    R LAA  L   P+ YH      GY        VL K
Sbjct: 13  GRECPVCGKPGKILMNEREVDEVSRTLAAI-LRHDPERYHIRLDSHGYARIAGIVTVLRK 71

Query: 54  WKKREW*HFFHILELTQ 4
           +K  +W  F HIL L +
Sbjct: 72  YKGMKWITFDHILSLAE 88


>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors
           OS=Drosophila melanogaster GN=Topors PE=1 SV=1
          Length = 1038

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 488 CLHEPPCKCLCPWKNHEPEC 547
           C+H+   KCLC W   +PEC
Sbjct: 118 CMHQFCFKCLCEWSKIKPEC 137


>sp|Q80Z71|TENN_MOUSE Tenascin-N OS=Mus musculus GN=Tnn PE=2 SV=1
          Length = 1560

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 200 CSSSLQSFPKHCSCHTYQRWERLTCREP 283
           CS      P+ CSCH  Q WE   C +P
Sbjct: 142 CSGHGTFLPETCSCHCDQGWEGADCDQP 169


>sp|O86776|TRUA_STRCO tRNA pseudouridine synthase A OS=Streptomyces
           coelicolor GN=truA PE=3 SV=1
          Length = 284

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
 Frame = -3

Query: 188 WCSIRSSCRTARGIWQLSILRGLLSITTATVHTRATFLH---------ILFFTSGRRG 42
           +C  R    T R + +LS++RG   I TATV   A F H         +LF   G RG
Sbjct: 171 YCKKREGATTIRTLQELSLVRGEDGIVTATVRADA-FCHNMVRSLIGALLFVGDGHRG 227


>sp|A3GGT2|YPI2_PICST Type 1 phosphatases regulator YPI2 OS=Pichia
           stipitis GN=YPI2 PE=3 SV=1
          Length = 192

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = -2

Query: 531 FFQGHKHLHGG---SCKQQLFHSHPPSFPAMLCFDNSQEERPVGDVGHSIESDNQPDRLT 361
           F Q H+H H     +      HSH  +F       NS   +  G+ G S  S + PD L 
Sbjct: 92  FDQNHRHSHNFDDINSDNSHSHSHGHNFDDKDDISNSSNNQDKGNTGMSKPSSSSPDNLV 151

Query: 360 SE 355
            E
Sbjct: 152 CE 153


>sp|O42182|FBLN1_DANRE Fibulin-1 OS=Danio rerio GN=fbln1 PE=2 SV=1
          Length = 681

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 150 HLAAFHLERTPQYYHCHCPHQGY 82
           H+ ++    TP  +HC CP  GY
Sbjct: 467 HICSYRCHNTPGSFHCTCPASGY 489
tr_hit_id A7PFK4
Definition tr|A7PFK4|A7PFK4_VITVI Chromosome chr11 scaffold_14, whole genome shotgun sequence OS=Vitis vinifera
Align length 84
Score (bit) 40.0
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955730|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O03, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PFK4|A7PFK4_VITVI Chromosome chr11 scaffold_14, whole genom...    40   0.100
tr|A5BLW1|A5BLW1_VITVI Putative uncharacterized protein OS=Vitis...    36   1.9  
tr|Q9ACN1|Q9ACN1_STRPY SclB protein OS=Streptococcus pyogenes GN...    35   2.5  
tr|Q9VF05|Q9VF05_DROME CG5516 OS=Drosophila melanogaster GN=CG55...    35   2.5  
tr|A5BZB0|A5BZB0_VITVI Putative uncharacterized protein OS=Vitis...    35   3.2  
tr|Q8RLX7|Q8RLX7_STRPY Collagen-like protein 2 OS=Streptococcus ...    29   4.5  
tr|Q48TT9|Q48TT9_STRPM Collagen-like surface protein OS=Streptoc...    29   4.5  
tr|Q6CJM1|Q6CJM1_KLULA KLLA0F17545p OS=Kluyveromyces lactis GN=K...    34   5.5  
tr|A4HRV8|A4HRV8_LEIIN Putative uncharacterized protein OS=Leish...    34   7.2  
tr|Q5XCD1|Q5XCD1_STRP6 Collagen-like surface protein OS=Streptoc...    33   9.4  
tr|Q7YXY5|Q7YXY5_CRYPV Conserved MIF4G domain protein OS=Cryptos...    33   9.4  
tr|Q5CXC8|Q5CXC8_CRYPV Eukaryotic translation initiation factor ...    33   9.4  
tr|Q5CJC8|Q5CJC8_CRYHO MIF4G domain protein OS=Cryptosporidium h...    33   9.4  
tr|B6PY45|B6PY45_BRAFL Putative uncharacterized protein OS=Branc...    33   9.4  
tr|B6LZY0|B6LZY0_BRAFL Putative uncharacterized protein OS=Branc...    33   9.4  
tr|A4H475|A4H475_LEIBR Putative uncharacterized protein OS=Leish...    33   9.4  
tr|Q13LV7|Q13LV7_BURXL Putative acyltransferase OS=Burkholderia ...    33   9.5  

>tr|A7PFK4|A7PFK4_VITVI Chromosome chr11 scaffold_14, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00017134001
            PE=4 SV=1
          Length = 1668

 Score = 40.0 bits (92), Expect = 0.100
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 327  MALTPIRRPPRLSG-GLAGYHSRYYGPHPRRAAPPVNYQNRALLEKTGGENGKVAACMNP 503
            + + P+RR P  S      Y  R  G + R         NR    KTG  N +     N 
Sbjct: 1527 LTVNPVRRSPHQSATARVPYGPRLSGGYNRSG-------NRVPRNKTGYHNPE----HNG 1575

Query: 504  HANAYVPGKTMNPNAAEFIPGKAW 575
             A+ +   + MNP+AAEF+PG+ W
Sbjct: 1576 DASPFTSPRVMNPHAAEFVPGQPW 1599


>tr|A5BLW1|A5BLW1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_008490 PE=4 SV=1
          Length = 2171

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 327  MALTPIRRPPRLSG-GLAGYHSRYYGPHPRRAAPPVNYQNRALLEKTGGENGKVAACMNP 503
            + + P+RR P  S      Y  R  G + R         NR    K G  N +    ++P
Sbjct: 1928 LTVNPVRRSPHQSATARVPYGPRLSGGYNRSG-------NRVPRNKIGYHNPEHNGDVSP 1980

Query: 504  HANAYVPGKTMNPNAAEFIPGKAW 575
                +   + MNP+AAEF+PG+ W
Sbjct: 1981 ----FTSPRIMNPHAAEFVPGQPW 2000


>tr|Q9ACN1|Q9ACN1_STRPY SclB protein OS=Streptococcus pyogenes
           GN=sclB PE=4 SV=1
          Length = 471

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 44/171 (25%), Positives = 61/171 (35%), Gaps = 3/171 (1%)
 Frame = +3

Query: 39  IPSSSTCKEQDVKEGSPGVDSGSGNTEESSQDGKLPXXXXXXXXXXXXXXXXXXXXXXXX 218
           +P       QD K+G PG D   G   +  +DG LP                        
Sbjct: 295 LPGKDGKDGQDGKDGLPGKDGKDGKDGQDGKDG-LP----GKDGKDGQNGKDGLPGKDGK 349

Query: 219 XXQNTVAVTPIKDGKDSHAGSHLPRTFSMRSNRSTTMALTPIRRPPRLSGGLAGYHSRYY 398
             QN     P KDGKD   G   P+T  +   +  T   TP  + P++ G      S+  
Sbjct: 350 DGQNGKDGLPGKDGKDGQPGKPAPKTPEV-PQKPDTAPHTP--KTPQIPG-----QSKDV 401

Query: 399 GPHPRRAAPPVNYQNRALLE---KTGGENGKVAACMNPHANAYVPGKTMNP 542
            P P+      N  NR L +   + G +  K  A  + H      G+T NP
Sbjct: 402 TPAPQ------NPSNRGLNKPQTQGGNQLAKTPAAHDTHRQLPATGETTNP 446


>tr|Q9VF05|Q9VF05_DROME CG5516 OS=Drosophila melanogaster GN=CG5516
           PE=2 SV=1
          Length = 176

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 6   ESAQECEKSATIPSSSTCKEQDVKEGSPGVDSGSGNTEESSQDGK 140
           +S+ E   S+   SSS+  + D +EGS    SGSG+  +SS+D K
Sbjct: 110 DSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSDSDSSEDQK 154


>tr|A5BZB0|A5BZB0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_010381 PE=4 SV=1
          Length = 1658

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 510  NAYVPGKTMNPNAAEFIPGKAWQSSQP 590
            + + P + MNP+A EF+P +AWQ+  P
Sbjct: 1467 SGFGPSRIMNPHAPEFVPRRAWQTKTP 1493


>tr|Q8RLX7|Q8RLX7_STRPY Collagen-like protein 2 OS=Streptococcus
           pyogenes GN=scl2 PE=4 SV=1
          Length = 444

 Score = 29.3 bits (64), Expect(2) = 4.5
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
 Frame = +3

Query: 246 PIKDGKDSHAGSHLPRTFSMRSNRSTTMALTPIRRPPRLSGGLAGYHSRYYGPHPRRAAP 425
           P KDGKD   G   P+T  +   +  T   TP  + P++ G      S+   P P+    
Sbjct: 332 PGKDGKDGQPGKPAPKTPEV-PQKPDTAPHTP--KTPQIPG-----QSKDVTPAPQ---- 379

Query: 426 PVNYQNRALLE---KTGGENGKVAACMNPHANAYVPGKTMNP 542
             N  NR L +   + G +  K  A  + H      G+T NP
Sbjct: 380 --NPSNRGLNKPQTQGGNQLAKTPAAHDTHRQLPATGETTNP 419



 Score = 23.9 bits (50), Expect(2) = 4.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 39  IPSSSTCKEQDVKEGSPGVDSGSGNTEESSQDGK 140
           +P       QD K+G PG D   G   +  +DG+
Sbjct: 307 LPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQ 340


>tr|Q48TT9|Q48TT9_STRPM Collagen-like surface protein
           OS=Streptococcus pyogenes serotype M28 GN=M28_Spy0754
           PE=4 SV=1
          Length = 422

 Score = 29.3 bits (64), Expect(2) = 4.5
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
 Frame = +3

Query: 246 PIKDGKDSHAGSHLPRTFSMRSNRSTTMALTPIRRPPRLSGGLAGYHSRYYGPHPRRAAP 425
           P KDGKD   G   P+T  +   +  T   TP  + P++ G      S+   P P+    
Sbjct: 310 PGKDGKDGQPGKPAPKTPEV-PQKPDTAPHTP--KTPQIPG-----QSKDVTPAPQ---- 357

Query: 426 PVNYQNRALLE---KTGGENGKVAACMNPHANAYVPGKTMNP 542
             N  NR L +   + G +  K  A  + H      G+T NP
Sbjct: 358 --NPSNRGLNKPQTQGGNQLAKTPAAHDTHRQLPATGETTNP 397



 Score = 23.9 bits (50), Expect(2) = 4.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 39  IPSSSTCKEQDVKEGSPGVDSGSGNTEESSQDGK 140
           +P       QD K+G PG D   G   +  +DG+
Sbjct: 285 LPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQ 318


>tr|Q6CJM1|Q6CJM1_KLULA KLLA0F17545p OS=Kluyveromyces lactis
           GN=KLLA0F17545g PE=4 SV=1
          Length = 926

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 26/79 (32%), Positives = 33/79 (41%)
 Frame = +3

Query: 312 NRSTTMALTPIRRPPRLSGGLAGYHSRYYGPHPRRAAPPVNYQNRALLEKTGGENGKVAA 491
           N   TM+LT  RRPP    G + + + Y GP+   AA P   +N       G  NG V A
Sbjct: 299 NDPRTMSLTADRRPPTQMNGNSQFRNGYQGPY---AASPTGSRNMGF---PGQVNGPVPA 352

Query: 492 CMNPHANAYVPGKTMNPNA 548
              P   +   G    P A
Sbjct: 353 RGPPVTGSSQYGPNSGPRA 371


>tr|A4HRV8|A4HRV8_LEIIN Putative uncharacterized protein OS=Leishmania
            infantum GN=LinJ03.0320 PE=4 SV=1
          Length = 2893

 Score = 33.9 bits (76), Expect = 7.2
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +3

Query: 9    SAQEC--EKSATIPSSSTCKEQDVKEGSPGVDSGSGNTEESSQDGK 140
            S QE   EK +  PS+++C ++D  EGS  V S SGN E+S  +GK
Sbjct: 1004 STQEAKTEKRSGEPSTASC-DRDEDEGSDEVASVSGNGEDSGDEGK 1048


>tr|Q5XCD1|Q5XCD1_STRP6 Collagen-like surface protein
           OS=Streptococcus pyogenes serotype M6 GN=M6_Spy0797 PE=4
           SV=1
          Length = 362

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 3/162 (1%)
 Frame = +3

Query: 66  QDVKEGSPGVDSGSGNTEESSQDGKLPXXXXXXXXXXXXXXXXXXXXXXXXXXQNTVAVT 245
           +D K+G  G D   G   +  QDGK                            Q+     
Sbjct: 210 KDGKDGQDGKDGLPGKDGKDGQDGK--------------------DGLPGKDGQDGKDGL 249

Query: 246 PIKDGKDSHAGSHLPRTFSMRSNRSTTMALTPIRRPPRLSGGLAGYHSRYYGPHPRRAAP 425
           P KDGKD   G   P+T  +   +  T   TP  +PP++ G      S+   P P+    
Sbjct: 250 PGKDGKDGQPGKPAPKTPEV-PQKPDTAPDTP--KPPQIPG-----QSKDVTPAPQ---- 297

Query: 426 PVNYQNRALLE---KTGGENGKVAACMNPHANAYVPGKTMNP 542
             N  NR L +   + G +  K  A  + H      G+T NP
Sbjct: 298 --NPSNRGLNKPQTQGGNQLAKTPAAHDTHRQLPATGETTNP 337