NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955738
Clone id TST39A01NGRL0023_O11
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGCTGGAACTGTGTGTTGAGAGAGACAGGAAGAAAAGGAAGGGAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATCCTTTAATGCAGCCAAAACAACCAGTTCCCCTAC
CAAGCAATCGAAATGATCAGCTCTATGATATAATCAAAGCAGAAGTTTTTGATGTTGTTG
CTGACATGAAGGAAGCCATTGAAATGACTCAAGAAAAAGCCTTGTCAGAAAGTTATGCAC
GTGAATCTGCCGACATGTCCAACATTTCCTTGAGTGAAGAGATTGTGAAGATGTTTCGGT
ATGTCTGCAAAGGCTATGTAGCAAAGATTGACAAGGTACTGATGTGCATTAAGACCATCA
ATGAAGTTCTTTGTATGATGTACAGTTTATGCTGAAGCTTGTGATGTCGAATATCGGAAT
CATTTGATA
■■Homology search results ■■ -
sp_hit_id P41913
Definition sp|P41913|GDS1_YEAST Protein GDS1 OS=Saccharomyces cerevisiae
Align length 74
Score (bit) 31.6
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955738|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O11, 5'
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41913|GDS1_YEAST Protein GDS1 OS=Saccharomyces cerevisiae GN...    32   1.4  
sp|P75988|YCGX_ECOLI Uncharacterized protein ycgX OS=Escherichia...    31   2.4  
sp|Q6D9I7|PLSB_ERWCT Glycerol-3-phosphate acyltransferase OS=Erw...    31   2.4  
sp|Q19157|PIN2_CAEEL LIM domain-containing protein pin-2 OS=Caen...    30   4.1  
sp|A4Z945|YE037_BOVIN Transposon-derived Buster3 transposase-lik...    29   7.0  
sp|Q66EE5|DGTP_YERPS Deoxyguanosinetriphosphate triphosphohydrol...    29   7.0  
sp|A4TPX3|DGTP_YERPP Deoxyguanosinetriphosphate triphosphohydrol...    29   7.0  
sp|Q1CLU0|DGTP_YERPN Deoxyguanosinetriphosphate triphosphohydrol...    29   7.0  
sp|Q8ZBM5|DGTP_YERPE Deoxyguanosinetriphosphate triphosphohydrol...    29   7.0  
sp|Q1C3X8|DGTP_YERPA Deoxyguanosinetriphosphate triphosphohydrol...    29   7.0  
sp|A7FM03|DGTP_YERP3 Deoxyguanosinetriphosphate triphosphohydrol...    29   7.0  
sp|O02747|AHR_RABIT Aryl hydrocarbon receptor OS=Oryctolagus cun...    29   7.0  
sp|Q8IZ13|YE037_HUMAN Transposon-derived Buster3 transposase-lik...    29   9.1  
sp|Q8DSF0|SECA_STRMU Protein translocase subunit secA OS=Strepto...    29   9.1  
sp|Q7VL83|RRF_HAEDU Ribosome-recycling factor OS=Haemophilus duc...    29   9.1  
sp|P10676|NINAC_DROME Neither inactivation nor afterpotential pr...    29   9.1  
sp|A1JJQ7|DGTP_YERE8 Deoxyguanosinetriphosphate triphosphohydrol...    29   9.1  

>sp|P41913|GDS1_YEAST Protein GDS1 OS=Saccharomyces cerevisiae
           GN=GDS1 PE=1 SV=1
          Length = 522

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 114 PLPSNRNDQLYDIIKAEVFDVVADMKEAIEMTQEKALSESYARESADMSNISLSEEIVKM 293
           P P NR+  L D +   VF ++ +M    +    K L +   ++  DMSN  LS ++  +
Sbjct: 105 PKPENRDSPLDDDVLHAVFLILWEMDPNQQGMTVKQLCDLLLQKHPDMSN--LSTKLSNL 162

Query: 294 FRYVCKGYVAKIDK 335
                  YV KI+K
Sbjct: 163 ISAKLNAYVKKIEK 176


>sp|P75988|YCGX_ECOLI Uncharacterized protein ycgX OS=Escherichia
           coli (strain K12) GN=ycgX PE=4 SV=1
          Length = 134

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = -3

Query: 418 SDIRHHKLQHKLYIIQRTSLMVLMHISTLSIFAT*PLQTYRNIFTISSLK 269
           S+++HH++ H +Y +   ++ ++ H  T+ +     L+  RN+  +S+ K
Sbjct: 25  SELKHHRIAHYIYYLATDNIRIITHDDTVLL-----LRGTRNLLKVSTTK 69


>sp|Q6D9I7|PLSB_ERWCT Glycerol-3-phosphate acyltransferase
           OS=Erwinia carotovora subsp. atroseptica GN=plsB PE=3
           SV=1
          Length = 825

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 153 IKAEVFDVVADMKEAIEMTQEKALSESYARESADMSNISLSEEIVKMFRY 302
           ++ E+F+ + D K   +   ++A S+  + E A  + I+L EEI   F Y
Sbjct: 213 VRQELFNKLLDSKAIKKAVDDEARSKKISHEKAQQNAIALMEEIAADFSY 262


>sp|Q19157|PIN2_CAEEL LIM domain-containing protein pin-2
           OS=Caenorhabditis elegans GN=pin-2 PE=2 SV=1
          Length = 329

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 299 PKHLHNLFTQGNVGHVGRFTCITF*QGFFLSHFNGFLHVSNNIKNFCFDYIIELI 135
           P+   ++FT     H   F C T  + FF     G  H   N K +C D  +ELI
Sbjct: 210 PQVEQSIFTMNKHWHTDHFRCATCARPFF-----GHEHYEKNGKAYCRDDFLELI 259


>sp|A4Z945|YE037_BOVIN Transposon-derived Buster3 transposase-like
           protein OS=Bos taurus PE=2 SV=1
          Length = 594

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 380 HHTKNFIDGLNAHQYLVNLCYIAFADIPKHLHNL 279
           H + N +DG    ++ ++L Y+  AD+ KHL+ L
Sbjct: 356 HQSSNLVDGFENKEFKIHLAYL--ADLFKHLNEL 387


>sp|Q66EE5|DGTP_YERPS Deoxyguanosinetriphosphate triphosphohydrolase
           OS=Yersinia pseudotuberculosis GN=dgt PE=3 SV=1
          Length = 506

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
 Frame = +3

Query: 102 KQPVPLPSNRNDQLYDIIKAEVFDVVADMKEA-IEMTQEKALSESYARESADMSNISLSE 278
           ++P   PS+  D+ Y+I +    D    +  A I   Q+K       R +A  S ++ S 
Sbjct: 13  QRPFSKPSSAEDE-YEITRVFESDRGRIVNSAAIRRLQQKTQVFPLERNAAVRSRLTHSL 71

Query: 279 EIVKMFRYVCKGYVAK-----------IDKVLMCIKTINEVLCMMYSL 389
           E+ ++ RY+ K  + +           +DK+L   ++I E+ C+M+ +
Sbjct: 72  EVQQVGRYIAKEILNRFKQDKKITAYGLDKLLDPFESIVEMACLMHDI 119


>sp|A4TPX3|DGTP_YERPP Deoxyguanosinetriphosphate triphosphohydrolase
           OS=Yersinia pestis (strain Pestoides F) GN=dgt PE=3 SV=1
          Length = 506

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
 Frame = +3

Query: 102 KQPVPLPSNRNDQLYDIIKAEVFDVVADMKEA-IEMTQEKALSESYARESADMSNISLSE 278
           ++P   PS+  D+ Y+I +    D    +  A I   Q+K       R +A  S ++ S 
Sbjct: 13  QRPFSKPSSAEDE-YEITRVFESDRGRIVNSAAIRRLQQKTQVFPLERNAAVRSRLTHSL 71

Query: 279 EIVKMFRYVCKGYVAK-----------IDKVLMCIKTINEVLCMMYSL 389
           E+ ++ RY+ K  + +           +DK+L   ++I E+ C+M+ +
Sbjct: 72  EVQQVGRYIAKEILNRFKQDKKITAYGLDKLLDPFESIVEMACLMHDI 119


>sp|Q1CLU0|DGTP_YERPN Deoxyguanosinetriphosphate triphosphohydrolase
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dgt
           PE=3 SV=1
          Length = 506

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
 Frame = +3

Query: 102 KQPVPLPSNRNDQLYDIIKAEVFDVVADMKEA-IEMTQEKALSESYARESADMSNISLSE 278
           ++P   PS+  D+ Y+I +    D    +  A I   Q+K       R +A  S ++ S 
Sbjct: 13  QRPFSKPSSAEDE-YEITRVFESDRGRIVNSAAIRRLQQKTQVFPLERNAAVRSRLTHSL 71

Query: 279 EIVKMFRYVCKGYVAK-----------IDKVLMCIKTINEVLCMMYSL 389
           E+ ++ RY+ K  + +           +DK+L   ++I E+ C+M+ +
Sbjct: 72  EVQQVGRYIAKEILNRFKQDKKITAYGLDKLLDPFESIVEMACLMHDI 119


>sp|Q8ZBM5|DGTP_YERPE Deoxyguanosinetriphosphate triphosphohydrolase
           OS=Yersinia pestis GN=dgt PE=3 SV=1
          Length = 506

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
 Frame = +3

Query: 102 KQPVPLPSNRNDQLYDIIKAEVFDVVADMKEA-IEMTQEKALSESYARESADMSNISLSE 278
           ++P   PS+  D+ Y+I +    D    +  A I   Q+K       R +A  S ++ S 
Sbjct: 13  QRPFSKPSSAEDE-YEITRVFESDRGRIVNSAAIRRLQQKTQVFPLERNAAVRSRLTHSL 71

Query: 279 EIVKMFRYVCKGYVAK-----------IDKVLMCIKTINEVLCMMYSL 389
           E+ ++ RY+ K  + +           +DK+L   ++I E+ C+M+ +
Sbjct: 72  EVQQVGRYIAKEILNRFKQDKKITAYGLDKLLDPFESIVEMACLMHDI 119


>sp|Q1C3X8|DGTP_YERPA Deoxyguanosinetriphosphate triphosphohydrolase
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dgt
           PE=3 SV=1
          Length = 506

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
 Frame = +3

Query: 102 KQPVPLPSNRNDQLYDIIKAEVFDVVADMKEA-IEMTQEKALSESYARESADMSNISLSE 278
           ++P   PS+  D+ Y+I +    D    +  A I   Q+K       R +A  S ++ S 
Sbjct: 13  QRPFSKPSSAEDE-YEITRVFESDRGRIVNSAAIRRLQQKTQVFPLERNAAVRSRLTHSL 71

Query: 279 EIVKMFRYVCKGYVAK-----------IDKVLMCIKTINEVLCMMYSL 389
           E+ ++ RY+ K  + +           +DK+L   ++I E+ C+M+ +
Sbjct: 72  EVQQVGRYIAKEILNRFKQDKKITAYGLDKLLDPFESIVEMACLMHDI 119
tr_hit_id B7XUL7
Definition tr|B7XUL7|B7XUL7_BORGA Tetratricopeptide repeat domain protein OS=Borrelia garinii Far04
Align length 57
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955738|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O11, 5'
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7XUL7|B7XUL7_BORGA Tetratricopeptide repeat domain protein O...    35   2.5  
tr|B7XTE6|B7XTE6_BORGA Tetratricopeptide repeat domain protein O...    35   2.5  
tr|A2DXH7|A2DXH7_TRIVA Putative uncharacterized protein OS=Trich...    35   2.5  
tr|A5EQ86|A5EQ86_BRASB Putative regulator with a cobalamin (Vita...    34   3.2  
tr|Q662V6|Q662V6_BORGA Putative uncharacterized protein OS=Borre...    33   5.5  
tr|O51085|O51085_BORBU Putative uncharacterized protein BB0058 O...    33   5.5  
tr|B7J0Z4|B7J0Z4_BORBU Tetratricopeptide repeat domain protein O...    33   5.5  
tr|B2T020|B2T020_BURPP GntR domain protein OS=Burkholderia phyto...    33   7.2  
tr|Q7X481|Q7X481_LEUCI Inulosucrase (Fragment) OS=Leuconostoc ci...    33   7.2  
tr|B4VVC8|B4VVC8_9CYAN DNA polymerase III, subunits gamma and ta...    33   7.2  

>tr|B7XUL7|B7XUL7_BORGA Tetratricopeptide repeat domain protein
           OS=Borrelia garinii Far04 GN=BGAFAR04_0063 PE=4 SV=1
          Length = 656

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 338 YLVNLCYIAFADIPKHLHNLFTQGNVGHVGRFTCITF*QGFFLSHFNGFLHVSNNIK 168
           YL+   Y+ F DI K + NL    N+     F  I   + FF S+F  FL  ++N K
Sbjct: 272 YLLGYSYLKFGDIEKAILNLERAKNLKKDLEFYNIALEESFFASNFRNFLKNNSNAK 328


>tr|B7XTE6|B7XTE6_BORGA Tetratricopeptide repeat domain protein
           OS=Borrelia garinii PBr GN=BGAPBR_0059 PE=4 SV=1
          Length = 656

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 338 YLVNLCYIAFADIPKHLHNLFTQGNVGHVGRFTCITF*QGFFLSHFNGFLHVSNNIK 168
           YL+   Y+ F DI K + NL    N+     F  I   + FF S+F  FL  ++N K
Sbjct: 272 YLLGYSYLKFGDIEKAILNLERAKNLKKDLEFYNIALEESFFASNFRNFLKNNSNAK 328


>tr|A2DXH7|A2DXH7_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_380390 PE=4 SV=1
          Length = 905

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
 Frame = +3

Query: 204 MTQEKALSESYARESADMSNISLSEEIVKMFRYVCKGYV-----AKIDKVLMCIKT---- 356
           +TQ K L+E+   E  +MSN   S +I +  RY+   +      +KIDK +  I+T    
Sbjct: 596 VTQTKILTEALNGEDGEMSNEERSAKITRSVRYLMFMFSTSEIRSKIDKDMKTIETLLSA 655

Query: 357 INEVLCMMYS 386
           +NE+  M+Y+
Sbjct: 656 VNEIFPMLYA 665


>tr|A5EQ86|A5EQ86_BRASB Putative regulator with a cobalamin (Vitamin
           B12)-binding domain, AerR-like protein OS=Bradyrhizobium
           sp. (strain BTAi1 / ATCC BAA-1182) GN=BBta_6420 PE=4
           SV=1
          Length = 298

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +3

Query: 87  PLMQPKQPVPLPSNRNDQLYDIIKAEVFDVVADMKEAIEMTQEKALSESYARESADMSNI 266
           P   P+  VPL S R+ QL D I+AE+   +  M  A  + +  A+  + A+E+AD + +
Sbjct: 26  PPAPPRISVPLQSTRHPQLNDAIEAEIIPRLV-MAHAAAIERVPAIITASAQEAADFAEL 84

Query: 267 SLSEE 281
            L  +
Sbjct: 85  VLDAD 89


>tr|Q662V6|Q662V6_BORGA Putative uncharacterized protein OS=Borrelia
           garinii GN=BG0057 PE=4 SV=1
          Length = 656

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 338 YLVNLCYIAFADIPKHLHNLFTQGNVGHVGRFTCITF*QGFFLSHFNGFLHVSNNIK 168
           YL+   Y+ F +I K + NL    N+     F  I   + FF S+F  FL  ++N K
Sbjct: 272 YLLGYSYLKFGNIEKAILNLERAKNLKKDLEFYSIALEESFFASNFRNFLKNNSNAK 328


>tr|O51085|O51085_BORBU Putative uncharacterized protein BB0058
           OS=Borrelia burgdorferi GN=BB_0058 PE=4 SV=1
          Length = 656

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 338 YLVNLCYIAFADIPKHLHNLFTQGNVGHVGRFTCITF*QGFFLSHFNGFLHVSNNIK 168
           YL+   Y+ F DI K + NL    N+     F  I   + FF S+F  FL  ++N +
Sbjct: 272 YLLGYSYLRFGDIEKAILNLERAKNLKKDLEFYNIALEESFFASNFRNFLKNNSNAR 328


>tr|B7J0Z4|B7J0Z4_BORBU Tetratricopeptide repeat domain protein
           OS=Borrelia burgdorferi ZS7 GN=BbuZS7_0059 PE=4 SV=1
          Length = 656

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 338 YLVNLCYIAFADIPKHLHNLFTQGNVGHVGRFTCITF*QGFFLSHFNGFLHVSNNIK 168
           YL+   Y+ F DI K + NL    N+     F  I   + FF S+F  FL  ++N +
Sbjct: 272 YLLGYSYLRFGDIEKAILNLERAKNLKKDLEFYNIALEESFFASNFRNFLKNNSNAR 328


>tr|B2T020|B2T020_BURPP GntR domain protein OS=Burkholderia
           phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_0142
           PE=4 SV=1
          Length = 278

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +3

Query: 84  DPLMQPKQPVPLPSNRNDQLYDIIKAEVFDVVADMKEAIEMTQEKALSESYARESADMSN 263
           +PL+QP    P  + R DQ+ ++IK+ + D    ++  + + +E  L E ++     M  
Sbjct: 11  EPLLQPDNKGPRTTKRGDQVAELIKSWITD--GKLRPGMRLNKEAELQEMFSVSRGSMRE 68

Query: 264 ISLSEEIVKMFR 299
              S E+  + R
Sbjct: 69  ALKSLEVQGLVR 80


>tr|Q7X481|Q7X481_LEUCI Inulosucrase (Fragment) OS=Leuconostoc
           citreum GN=islA PE=4 SV=1
          Length = 1490

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +3

Query: 105 QPVPLPSNRNDQLYDIIKAEVFDVVADMKEAIEMTQEKALSESYARESADMSNISLSEEI 284
           +PVP  SN+N+ + D   A   ++  D K A      K    + + E A  S ++ S+E+
Sbjct: 57  EPVPDKSNKNESVKDSKVATSDELAKDSKVATSDELAKDSKVATSDELAKDSKVATSDEL 116

Query: 285 VKMFRYVCKGYVAKIDKV 338
           VK  +      +AK  KV
Sbjct: 117 VKDSKVATSDELAKDSKV 134


>tr|B4VVC8|B4VVC8_9CYAN DNA polymerase III, subunits gamma and tau
           OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_4141
           PE=4 SV=1
          Length = 379

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 380 HHTKNFIDGLNAHQYLVNLCYIAFADIPKHLHNLFTQGN 264
           HH ++ I  + A   LV+LC   F D P+ LHNL    N
Sbjct: 240 HHVRDVIGSIPADS-LVDLCVSIFQDTPQRLHNLMALSN 277