DK955739 |
Clone id |
TST39A01NGRL0023_O12 |
Library |
TST39 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O12. 5' end sequence. |
Accession |
DK955739 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL573Contig1 |
Sequence |
CTTTTCGATGCTGCTCGATCGAGCTAGTCATCGCCATAGCTGTGCGTTCCATTCTCATCA CGAGCATCTCTCCATGCGTGCCGCCACTGCAGGTCACTAGCTTTTCAGGTCTCTTGAGGG CGGCTGAGCTTGAATTTGTTCTCTGTGGAGCGCGTCACCACGGCTACCTTGCGATACACC TCCAAGCCCGATATGCCGGGGAAGCGCCCTCGCCCCTTTCTGCGAACGAGCAGTAGACCG CAGCTGCTCCAGAGCTGCGGTCATGAAAGCCCTCCTCCTCCCTCGCCAGTAGGCGTGAAG TATGACATGGGAGCTCCGCAGCGTGTCGTTGTTGGCTTTGATGTTAGTGGCGAAGCGAAC AACACTAAGCCTCACTTCGACCCTTGTGAGAGCCCTAGGTCTGTGTTGGAATCGGATGCA TTGAGTGATGATGATGATCATCATCTTCGTAGTTCTCCCCCGGCCCCGACCCCAGCTCCA TCTCCACGCTCTGTTCTTGATAGGTTGTTATCAGGACCGGATTCTCGACCTGCTTACACA GAAGGGGTTGGTCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56WH4 |
Definition |
sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana |
Align length |
67 |
Score (bit) |
35.4 |
E-value |
0.19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955739|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_O12, 5' (555 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis tha... 35 0.19 sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella p... 35 0.25 sp|P05670|Y126_ADE07 Uncharacterized 12.6 kDa early protein OS=H... 35 0.25 sp|O35141|RASF5_RAT Ras association domain-containing protein 5 ... 33 1.2 sp|Q5EBH1|RASF5_MOUSE Ras association domain-containing protein ... 33 1.2 sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus lae... 32 1.6 sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g... 32 2.1 sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus lae... 32 2.1 sp|A6R7B8|MCA1_AJECN Metacaspase-1 OS=Ajellomyces capsulata (str... 31 3.6 sp|Q89893|DR2_HHV6U Uncharacterized protein DR2 OS=Human herpesv... 30 6.0 sp|Q32LQ1|PKHO2_BOVIN Pleckstrin homology domain-containing fami... 30 6.1 sp|A1CJJ9|YAE1_ASPCL Uncharacterized protein yae1 OS=Aspergillus... 30 7.9 sp|P54842|MAFB_RAT Transcription factor MafB OS=Rattus norvegicu... 30 7.9 sp|P54841|MAFB_MOUSE Transcription factor MafB OS=Mus musculus G... 30 7.9 sp|Q2PFS4|MAFB_MACFA Transcription factor MafB OS=Macaca fascicu... 30 7.9 sp|Q9Y5Q3|MAFB_HUMAN Transcription factor MafB OS=Homo sapiens G... 30 7.9 sp|Q8WWW0|RASF5_HUMAN Ras association domain-containing protein ... 30 8.0 sp|P56975|NRG3_HUMAN Pro-neuregulin-3, membrane-bound isoform OS... 30 8.0 sp|Q9H6F5|CCD86_HUMAN Coiled-coil domain-containing protein 86 O... 30 8.0 sp|O35451|ATF6B_MOUSE Cyclic AMP-dependent transcription factor ... 30 8.0
>sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=2 SV=2 Length = 306
Score = 35.4 bits (80), Expect = 0.19 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +1
Query: 181 SKPDMPGKRPRPFLRTSSRPQLLQSC---GHESPPPPSPVGVKYDMGAPQRVVVGFDVSG 351 SK + GK+ +P +S PQ + GH + P P+ G K + A Q G SG Sbjct: 216 SKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 275
Query: 352 EANNTKP 372 NN KP Sbjct: 276 GNNNKKP 282
>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1 Length = 421
Score = 35.0 bits (79), Expect = 0.25 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3
Query: 541 LCKQVENPVLITTYQEQSVEMELGSGPGENYEDDDHHHHSMHPIPTQT*GSHKGRSE 371 +C+ E PVL+ + + + GPG NY+DD H S + T++ H+ S+ Sbjct: 189 MCQSDEGPVLLKVPKAPKSPISVNPGPGCNYDDDS-EHSSSSTVTTKSHEDHRDSSD 244
>sp|P05670|Y126_ADE07 Uncharacterized 12.6 kDa early protein OS=Human adenovirus B serotype 7 PE=4 SV=1 Length = 114
Score = 35.0 bits (79), Expect = 0.25 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = -1
Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103 AL+ ARS + A G GG +QG+R A HR +Q+ ++PPSR K Sbjct: 45 ALDTASKHARSNRATAAQKEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103
>sp|O35141|RASF5_RAT Ras association domain-containing protein 5 OS=Rattus norvegicus GN=Rassf5 PE=1 SV=1 Length = 413
Score = 32.7 bits (73), Expect = 1.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1
Query: 199 GKRPRPFLRTSSRPQLLQSCGHESPPPPS 285 G+RP P L P+ LQS G PPPP+ Sbjct: 7 GQRPYPLLLDPEPPRYLQSLGGTEPPPPA 35
>sp|Q5EBH1|RASF5_MOUSE Ras association domain-containing protein 5 OS=Mus musculus GN=Rassf5 PE=1 SV=1 Length = 413
Score = 32.7 bits (73), Expect = 1.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1
Query: 199 GKRPRPFLRTSSRPQLLQSCGHESPPPPS 285 G+RP P L P+ LQS G PPPP+ Sbjct: 7 GQRPYPLLLDPEPPRYLQSLGGTEPPPPA 35
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-B PE=2 SV=1 Length = 325
Score = 32.3 bits (72), Expect = 1.6 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1
Query: 178 TSKPDMPGK-RPRPFLRTSSRPQLLQSCGHESPPPPSPVGVKY 303 T+ +PG P PF+ +S LQ G PPPP G Y Sbjct: 246 TTPTSLPGSYTPPPFINPASMGHALQPLGAMGPPPPYQCGANY 288
>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles gambiae GN=nkd PE=2 SV=1 Length = 886
Score = 32.0 bits (71), Expect = 2.1 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%) Frame = -3
Query: 517 VLITTYQEQSVEME----LGSGPGE---NYEDDDHHHHS--MHPIPTQT*GSHKGRSEA* 365 +L+T+ +EQ ++++ GSG G+ +++ HHHH H P+ +H G S Sbjct: 49 LLLTSDREQMLKVKSSASTGSGTGQTKTSFQHSHHHHHHGHHHQSPSSNGHNHSGTS--- 105
Query: 364 CCSLRH*HQSQQRH 323 H Q QQ+H Sbjct: 106 -----HQQQQQQQH 114
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-A PE=2 SV=1 Length = 322
Score = 32.0 bits (71), Expect = 2.1 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1
Query: 178 TSKPDMPGK-RPRPFLRTSSRPQLLQSCGHESPPPPSPVGVKY 303 T+ P +PG P PF+ S LQ G PPPP G + Sbjct: 246 TTPPSLPGSYTPPPFINPVSVGHALQPLGAMGPPPPYQCGANF 288
>sp|A6R7B8|MCA1_AJECN Metacaspase-1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=MCA1 PE=3 SV=1 Length = 356
Score = 31.2 bits (69), Expect = 3.6 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +1
Query: 175 YTSKPDMPGKRPRPFLRTSSRPQLLQSCGHESPPPPSPVGVKYDMGAPQ 321 Y+ + P P+ + + S GH PPPP V++ GAPQ Sbjct: 2 YSGRSGAPPPAHSPYPNSYNHGPPGHSAGHNVPPPPPTQPVQFGHGAPQ 50
>sp|Q89893|DR2_HHV6U Uncharacterized protein DR2 OS=Human herpesvirus 6A (strain Uganda-1102) GN=DR2L PE=3 SV=1 Length = 620
Score = 30.4 bits (67), Expect = 6.0 Identities = 26/86 (30%), Positives = 36/86 (41%) Frame = -3
Query: 499 QEQSVEMELGSGPGENYEDDDHHHHSMHPIPTQT*GSHKGRSEA*CCSLRH*HQSQQRHA 320 QE S + + G G G + DD H H+ Q G H+ R + S RH H + + A Sbjct: 351 QESSDDHQRG-GSGRGHRDDGAHRHANDKTEPQQRGEHEERKQT--DSGRHEHAQESQVA 407
Query: 319 AELPCHTSRLLAREEEGFHDRSSGAA 242 R E+G +RS G A Sbjct: 408 -------RRDEEETEQGDSERSCGGA 426
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3E700 |
Definition |
tr|Q3E700|Q3E700_ARATH Uncharacterized protein At5g22650.2 OS=Arabidopsis thaliana |
Align length |
66 |
Score (bit) |
35.8 |
E-value |
1.6 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955739|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_O12, 5' (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q3E700|Q3E700_ARATH Uncharacterized protein At5g22650.2 OS=Ar... 36 1.6 tr|Q5AXG0|Q5AXG0_EMENI Predicted protein OS=Emericella nidulans ... 36 1.6 tr|A9U1I8|A9U1I8_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.7 tr|Q5EY75|Q5EY75_ADE07 E2B hypothetical 12.6 kDa early protein O... 35 2.7 tr|Q2KSC4|Q2KSC4_9ADEN Hypothetical 12.6 kDa protein OS=Human ad... 35 2.7 tr|Q2KRX9|Q2KRX9_ADE16 Hypothetical 12.6 kDa early protein OS=Hu... 35 2.7 tr|B7Z562|B7Z562_HUMAN cDNA FLJ59041 OS=Homo sapiens PE=2 SV=1 27 2.7 tr|B7FRG5|B7FRG5_PHATR Predicted protein OS=Phaeodactylum tricor... 35 3.5 tr|Q2KSK5|Q2KSK5_ADE03 Hypothetical 12.6 kDa protein OS=Human ad... 34 4.6 tr|Q3JGC1|Q3JGC1_BURP1 Acetyltransferase, GNAT family OS=Burkhol... 34 4.6 tr|B7CGK3|B7CGK3_BURPS Acetyltransferase, GNAT family OS=Burkhol... 34 4.6 tr|A8KQM5|A8KQM5_BURPS Acetyltransferase, GNAT family OS=Burkhol... 34 4.6 tr|B4JPI4|B4JPI4_DROGR GH13525 OS=Drosophila grimshawi GN=GH1352... 34 6.0 tr|Q2KG94|Q2KG94_MAGGR Putative uncharacterized protein OS=Magna... 34 6.0 tr|Q2VNJ5|Q2VNJ5_METAI Chromosomal replication initiator protein... 34 6.1 tr|A3U0E3|A3U0E3_9RHOB Amidase OS=Oceanicola batsensis HTCC2597 ... 34 6.1 tr|Q1LL85|Q1LL85_RALME UspA OS=Ralstonia metallidurans (strain C... 33 7.8 tr|Q9XEK5|Q9XEK5_CHLRE Gamete-specific homeodomain protein GSP1 ... 33 7.8 tr|A8I3J2|A8I3J2_CHLRE Gamete-specific transcription factor OS=C... 33 7.8 tr|B1G982|B1G982_9BURK Putative uncharacterized protein OS=Burkh... 33 7.9 tr|Q6NRK0|Q6NRK0_XENLA MGC83760 protein OS=Xenopus laevis GN=asa... 28 8.7
>tr|Q3E700|Q3E700_ARATH Uncharacterized protein At5g22650.2 OS=Arabidopsis thaliana GN=At5g22650 PE=4 SV=2 Length = 305
Score = 35.8 bits (81), Expect = 1.6 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +1
Query: 181 SKPDMPGKRPRPFLRTSSRPQLLQSC--GHESPPPPSPVGVKYDMGAPQRVVVGFDVSGE 354 SK + GK+ +P +S PQ + GH + P P+ G K + A Q G SG Sbjct: 216 SKTPVSGKKAKPAAAPASTPQKTEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSGG 275
Query: 355 ANNTKP 372 NN KP Sbjct: 276 NNNKKP 281
>tr|Q5AXG0|Q5AXG0_EMENI Predicted protein OS=Emericella nidulans GN=AN7020.2 PE=4 SV=1 Length = 146
Score = 35.8 bits (81), Expect = 1.6 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Frame = -1
Query: 435 IIITQCIRFQHRPRALTRVEVRLSVVRFAT--NIKANNDTLRSSHVILHAYWRGRRRAFM 262 I+I ++ Q A+ + +RL +V NI AN DT++ ++A+ AF Sbjct: 25 IMIIPIVQLQDVLCAMLSLSMRLGIVVCVDMGNISANGDTVQLIQKRINAFRLHDELAF- 83
Query: 261 TAALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHREQIQAQPPSRDLKS 100 +L L+ + R+ +GLG VSQ +R D LH +QP S+ L S Sbjct: 84 -GSLVHLQKKFKQAGTVRSNQILLGLG-VSQLARTDVLHCADADSQPQSKYLSS 135
>tr|A9U1I8|A9U1I8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_100368 PE=4 SV=1 Length = 421
Score = 35.0 bits (79), Expect = 2.7 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3
Query: 541 LCKQVENPVLITTYQEQSVEMELGSGPGENYEDDDHHHHSMHPIPTQT*GSHKGRSE 371 +C+ E PVL+ + + + GPG NY+DD H S + T++ H+ S+ Sbjct: 189 MCQSDEGPVLLKVPKAPKSPISVNPGPGCNYDDDS-EHSSSSTVTTKSHEDHRDSSD 244
>tr|Q5EY75|Q5EY75_ADE07 E2B hypothetical 12.6 kDa early protein OS=Human adenovirus B serotype 7 GN=E2B PE=4 SV=1 Length = 114
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = -1
Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103 AL+ ARS + A G GG +QG+R A HR +Q+ ++PPSR K Sbjct: 45 ALDTASKHARSNRATAAQKEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103
>tr|Q2KSC4|Q2KSC4_9ADEN Hypothetical 12.6 kDa protein OS=Human adenovirus 21 PE=4 SV=1 Length = 114
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = -1
Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103 AL+ ARS + A G GG +QG+R A HR +Q+ ++PPSR K Sbjct: 45 ALDTASKHARSNRATAAQKEKQGHGGSTQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103
>tr|Q2KRX9|Q2KRX9_ADE16 Hypothetical 12.6 kDa early protein OS=Human adenovirus B serotype 16 PE=4 SV=1 Length = 114
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = -1
Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103 AL+ ARS + A G GG +QG+R A HR +Q+ ++PPSR K Sbjct: 45 ALDTASKHARSNRATAAQTEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103
>tr|B7Z562|B7Z562_HUMAN cDNA FLJ59041 OS=Homo sapiens PE=2 SV=1 Length = 218
Score = 27.3 bits (59), Expect(2) = 2.7 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Frame = +1
Query: 184 KPDMPGKRPRPFLRTSSRPQLLQSCGHESP-PPPSPVGVKYDMGAPQRVVVGF 339 KP P K PRP RP L + P PPP P +G Q V F Sbjct: 32 KPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLAQSKVTLF 84
Score = 26.2 bits (56), Expect(2) = 2.7 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = +2
Query: 137 CSLWSASPRLPCDTPPSP 190 C LWS P LP PP P Sbjct: 19 CGLWSPPPPLPPRKPPRP 36
>tr|B7FRG5|B7FRG5_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_42487 PE=4 SV=1 Length = 199
Score = 34.7 bits (78), Expect = 3.5 Identities = 20/70 (28%), Positives = 28/70 (40%) Frame = -3
Query: 457 ENYEDDDHHHHSMHPIPTQT*GSHKGRSEA*CCSLRH*HQSQQRHAAELPCHTSRLLARE 278 + +++DDHHHH P T+ G H+ +H AE C +E Sbjct: 87 KKHKEDDHHHHDHKPHATKAHGEEH-------------HEHDHKHTAE--CTHDHAHQKE 131
Query: 277 EEGFHDRSSG 248 EE HD G Sbjct: 132 EEAKHDGHHG 141
>tr|Q2KSK5|Q2KSK5_ADE03 Hypothetical 12.6 kDa protein OS=Human adenovirus B serotype 3 GN=E2B PE=4 SV=1 Length = 111
Score = 34.3 bits (77), Expect = 4.6 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%) Frame = -1
Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSR 112 AL+ ARS + A G GG +QG+R A HR +Q+ ++PPSR Sbjct: 42 ALDTASKHARSNRATAAQKEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSR 97
>tr|Q3JGC1|Q3JGC1_BURP1 Acetyltransferase, GNAT family OS=Burkholderia pseudomallei (strain 1710b) GN=BURPS1710b_A2231 PE=4 SV=1 Length = 213
Score = 34.3 bits (77), Expect = 4.6 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = -1
Query: 273 RAFMTAALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHREQIQAQPPS 115 R F A+ LR AR A AL R G ++ R LHR + AQPP+ Sbjct: 80 RVFAQDAVRALRRVARVTSDAHALYRPAGFTALAHPPRWMELHRPGVYAQPPA 132
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