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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955741
Clone id TST39A01NGRL0023_O14
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTCCTTTTTCCACCTCGAAATTTAGATGGGGCGCCCGGCACAGTGGAAGCTATAGCGCTG
ATCTGATCTGAAACAATATGATGCTCCCGGTGGAGAGTACTTGATTCTAACAAGATTATT
CATTCGTGAAGGATTTCCTTAAATGATGTTAGTCGAGAAAACGAGAGGCTACGGTGGATG
ATATCCAGTGCTCGAAAAATCCGGGCAAAACTACATATGAGAAATTGTAGAGATGTGAAA
TGGGCTTGGATCTTTTTGATGTTGAGAGAATCACTTTGCAGTGGACTAACTATACTGCAT
GTTGATGTATGATCTTGTGCTCCCAAATCAAAGTGAGAAGAGACGAGCAGGGGCAATGTA
AAATCCTCGATAAATTATCGGAGACCCGTGATTAAGTAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id P11621
Definition sp|P11621|ORF0_PLRVW Uncharacterized protein ORF0 OS=Potato leafroll virus (strain Wageningen)
Align length 38
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955741|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O14, 5'
         (397 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11621|ORF0_PLRVW Uncharacterized protein ORF0 OS=Potato leaf...    30   3.7  
sp|P17518|ORF0_PLRV1 Uncharacterized protein ORF0 OS=Potato leaf...    30   3.7  

>sp|P11621|ORF0_PLRVW Uncharacterized protein ORF0 OS=Potato
           leafroll virus (strain Wageningen) GN=ORF0 PE=3 SV=1
          Length = 247

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -3

Query: 242 HFTSLQF----LICSFARIFRALDIIHRSLSFSRLTSF 141
           HF  L F    L+ +FAR++  LD+  R+ SF  LT F
Sbjct: 189 HFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRALTGF 226


>sp|P17518|ORF0_PLRV1 Uncharacterized protein ORF0 OS=Potato
           leafroll virus (strain 1) GN=ORF0 PE=3 SV=1
          Length = 247

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -3

Query: 242 HFTSLQF----LICSFARIFRALDIIHRSLSFSRLTSF 141
           HF  L F    L+ +FAR++  LD+  R+ SF  LT F
Sbjct: 189 HFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRALTGF 226
tr_hit_id A7S3G3
Definition tr|A7S3G3|A7S3G3_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 50
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955741|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O14, 5'
         (397 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7S3G3|A7S3G3_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   4.1  
tr|Q8T0G2|Q8T0G2_DROME LD05303p OS=Drosophila melanogaster GN=CG...    33   9.2  
tr|Q8SXV3|Q8SXV3_DROME CG32000, isoform D OS=Drosophila melanoga...    33   9.2  
tr|Q8IMA7|Q8IMA7_DROME CG32000, isoform E OS=Drosophila melanoga...    33   9.2  
tr|Q8IMA6|Q8IMA6_DROME CG32000, isoform A OS=Drosophila melanoga...    33   9.2  
tr|Q8IMA5|Q8IMA5_DROME CG32000, isoform F OS=Drosophila melanoga...    33   9.2  
tr|Q8IMA3|Q8IMA3_DROME CG32000, isoform C OS=Drosophila melanoga...    33   9.2  
tr|Q8IG91|Q8IG91_DROME SD17880p OS=Drosophila melanogaster GN=CG...    33   9.2  
tr|Q7KQN3|Q7KQN3_DROME CG32000, isoform G OS=Drosophila melanoga...    33   9.2  
tr|A8DZ26|A8DZ26_DROME CG32000, isoform H OS=Drosophila melanoga...    33   9.2  

>tr|A7S3G3|A7S3G3_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g20161 PE=4 SV=1
          Length = 4187

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = -3

Query: 317 QDHTSTCSIVSPLQSDSLNIKKIQAHFTSLQFLICSFARIFRALDIIHRS 168
           Q+H ST  + SPL + +L IK+ Q  ++SLQ LI + A++      + RS
Sbjct: 639 QNHVSTKCVDSPLYAKALKIKQEQKSYSSLQPLIFATAKLHNRHHPVFRS 688


>tr|Q8T0G2|Q8T0G2_DROME LD05303p OS=Drosophila melanogaster
           GN=CG32000 PE=2 SV=1
          Length = 239

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 127 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 156


>tr|Q8SXV3|Q8SXV3_DROME CG32000, isoform D OS=Drosophila
           melanogaster GN=CG32000 PE=2 SV=1
          Length = 658

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 264 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 293


>tr|Q8IMA7|Q8IMA7_DROME CG32000, isoform E OS=Drosophila
           melanogaster GN=CG32000 PE=2 SV=1
          Length = 595

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 201 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 230


>tr|Q8IMA6|Q8IMA6_DROME CG32000, isoform A OS=Drosophila
           melanogaster GN=CG32000 PE=2 SV=2
          Length = 1314

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 127 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 156


>tr|Q8IMA5|Q8IMA5_DROME CG32000, isoform F OS=Drosophila
           melanogaster GN=CG32000 PE=2 SV=1
          Length = 521

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 127 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 156


>tr|Q8IMA3|Q8IMA3_DROME CG32000, isoform C OS=Drosophila
           melanogaster GN=CG32000 PE=2 SV=1
          Length = 497

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 103 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 132


>tr|Q8IG91|Q8IG91_DROME SD17880p OS=Drosophila melanogaster
           GN=CG32000 PE=2 SV=1
          Length = 1047

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 201 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 230


>tr|Q7KQN3|Q7KQN3_DROME CG32000, isoform G OS=Drosophila
           melanogaster GN=CG32000 PE=1 SV=1
          Length = 1388

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 201 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 230


>tr|A8DZ26|A8DZ26_DROME CG32000, isoform H OS=Drosophila
           melanogaster GN=CG32000 PE=3 SV=1
          Length = 1451

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 263 NIKKIQAHFTSLQFLICSFARIFRALDIIH 174
           N+ ++  HFTS QF  CS  RIFR   +++
Sbjct: 264 NVLQLSVHFTSAQFKKCSSIRIFRCKQLVY 293