DK955755 |
Clone id |
TST39A01NGRL0023_P05 |
Library |
TST39 |
Length |
574 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_P05. 5' end sequence. |
Accession |
DK955755 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL94Contig1 |
Sequence |
GCTGGCCGCGAAGATCCTACACCTTGAAAACCATGTTTTTGTGAACGCCCTCTTGCGCCA AGAGCCACATCACCATTACATGACTGTTGCAGCATGTTCTTCTTCTTGCCTACCTCGAGC TATATATAGAGAGATAGCATTATCTGATTCCATTTCCCAACATTTTGTTACAACACCTCA TTAAGCATCAGGATCAACATAATCTTTTTGTTCAAGCCATGAGCTTATGACTGGCCGTCG TTTTAAGGCGTCACTTCTCGCAGAAGTGTGCACCTTCTTGTTCGTGCTGCTCGTGAGAAG TTTGAGCGCAATAAGCCGCATGTGAACATTGGCACTATTGGCCATGTCGACCACGGGAAA ACGACTCTCACTGCTGCCCTCACAATGGCTGCAGCGTCTGAGCTAGGGAGTGCTCCTAAA AGATATGATCAGATTGATGCTGCCCCAGAGGAAAGAGCAAGAGGTATTACCATCAACACC GCAGTGGTCGAATATGAGTCTCCCAACAGACACTATGCACACGTGGACTGCCCTGGACAT GCTGACTATGTGAAGAACATGATAACTGGTGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46280 |
Definition |
sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max |
Align length |
107 |
Score (bit) |
157.0 |
E-value |
4.0e-38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955755|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_P05, 5' (574 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 157 4e-38 sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 157 5e-38 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 157 5e-38 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 156 8e-38 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 155 2e-37 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 152 2e-36 sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum ... 150 4e-36 sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidu... 149 1e-35 sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha ... 149 1e-35 sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha ... 149 1e-35 sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacea... 148 2e-35 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 148 2e-35 sp|Q47JA5|EFTU_DECAR Elongation factor Tu OS=Dechloromonas aroma... 147 5e-35 sp|A4JAM5|EFTU_BURVG Elongation factor Tu OS=Burkholderia vietna... 147 5e-35 sp|Q2SU25|EFTU_BURTA Elongation factor Tu OS=Burkholderia thaila... 147 5e-35 sp|Q63PZ6|EFTU_BURPS Elongation factor Tu OS=Burkholderia pseudo... 147 5e-35 sp|A3NEI1|EFTU_BURP6 Elongation factor Tu OS=Burkholderia pseudo... 147 5e-35 sp|Q3JMP6|EFTU_BURP1 Elongation factor Tu OS=Burkholderia pseudo... 147 5e-35 sp|A3P0B5|EFTU_BURP0 Elongation factor Tu OS=Burkholderia pseudo... 147 5e-35 sp|A1V8A5|EFTU_BURMS Elongation factor Tu OS=Burkholderia mallei... 147 5e-35 sp|Q62GK3|EFTU_BURMA Elongation factor Tu OS=Burkholderia mallei... 147 5e-35 sp|A2S7F9|EFTU_BURM9 Elongation factor Tu OS=Burkholderia mallei... 147 5e-35 sp|A3MRT8|EFTU_BURM7 Elongation factor Tu OS=Burkholderia mallei... 147 5e-35 sp|P42481|EFTU_THICU Elongation factor Tu OS=Thiobacillus cuprin... 146 6e-35 sp|A2SLF9|EFTU_METPP Elongation factor Tu OS=Methylibium petrole... 146 6e-35 sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scen... 146 8e-35 sp|A4SUU7|EFTU_POLSQ Elongation factor Tu OS=Polynucleobacter sp... 146 8e-35 sp|Q123F6|EFTU_POLSJ Elongation factor Tu OS=Polaromonas sp. (st... 145 1e-34 sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostr... 145 1e-34 sp|A4IW92|EFTU_FRATW Elongation factor Tu OS=Francisella tularen... 145 1e-34
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 157 bits (397), Expect = 4e-38 Identities = 80/107 (74%), Positives = 83/107 (77%) Frame = +1
Query: 253 TSRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 432 T RRS VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 62 TRRRS--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDE 119
Query: 433 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 120 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 166
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 157 bits (396), Expect = 5e-38 Identities = 83/134 (61%), Positives = 92/134 (68%) Frame = +1
Query: 172 NTSLSIRINIIFLFKP*AYDWPSF*GVTSRRSVHLLVRAAREKFERNKPHVNIGTIGHVD 351 ++S + + +FL P PS + R VRAAR KFER KPHVNIGTIGHVD Sbjct: 37 SSSFTPNCSTLFLHSPAT---PS--STATHRHRRFTVRAARGKFERKKPHVNIGTIGHVD 91
Query: 352 HGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITINTAVVEYESPNRHYAHVDC 531 HGK S SAPK+YD+IDAAPEERARGITINTA VEYE+ NRHYAHVDC Sbjct: 92 HGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 151
Query: 532 PGHADYVKNMITGA 573 PGHADYVKNMITGA Sbjct: 152 PGHADYVKNMITGA 165
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 157 bits (396), Expect = 5e-38 Identities = 83/134 (61%), Positives = 92/134 (68%) Frame = +1
Query: 172 NTSLSIRINIIFLFKP*AYDWPSF*GVTSRRSVHLLVRAAREKFERNKPHVNIGTIGHVD 351 ++S + + +FL P PS + R VRAAR KFER KPHVNIGTIGHVD Sbjct: 37 SSSFTPNCSTLFLHSPAT---PS--STATHRHRRFTVRAARGKFERKKPHVNIGTIGHVD 91
Query: 352 HGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITINTAVVEYESPNRHYAHVDC 531 HGK S SAPK+YD+IDAAPEERARGITINTA VEYE+ NRHYAHVDC Sbjct: 92 HGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 151
Query: 532 PGHADYVKNMITGA 573 PGHADYVKNMITGA Sbjct: 152 PGHADYVKNMITGA 165
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 156 bits (394), Expect = 8e-38 Identities = 76/98 (77%), Positives = 79/98 (80%) Frame = +1
Query: 280 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 459 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 75 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERA 134
Query: 460 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 135 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 172
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 155 bits (391), Expect = 2e-37 Identities = 78/107 (72%), Positives = 83/107 (77%) Frame = +1
Query: 253 TSRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 432 T RR+ VRAAR KFER KPHVNIGTIGHVDHGK + SAPK+YD+ Sbjct: 62 TPRRT--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDE 119
Query: 433 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 120 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 166
>sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1 Length = 476
Score = 152 bits (383), Expect = 2e-36 Identities = 77/107 (71%), Positives = 82/107 (76%) Frame = +1
Query: 253 TSRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 432 ++RRS VRAAR KFER KPHVNIGTIGHVDHGK S S K+YD+ Sbjct: 59 STRRS--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
Query: 433 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 163
>sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1 Length = 488
Score = 150 bits (379), Expect = 4e-36 Identities = 73/98 (74%), Positives = 77/98 (78%) Frame = +1
Query: 280 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 459 VRAAR KFER KPH+NIGTIGHVDHGK SAPK+YD+IDAAPEERA Sbjct: 78 VRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALACLGNSAPKKYDEIDAAPEERA 137
Query: 460 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 RGITINTA VEYE+ RHYAHVDCPGHADYVKNMITGA Sbjct: 138 RGITINTATVEYETETRHYAHVDCPGHADYVKNMITGA 175
>sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=tuf1 PE=3 SV=1 Length = 396
Score = 149 bits (376), Expect = 1e-35 Identities = 69/95 (72%), Positives = 77/95 (81%) Frame = +1
Query: 289 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 468 A+EKFER KPHVN+GTIGHVDHGK ++ G A K+YD+IDAAPEE+ARGI Sbjct: 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAAKFGGAAKKYDEIDAAPEEKARGI 61
Query: 469 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 TINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGA 96
>sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha (strain JMP134) GN=tuf1 PE=3 SV=1 Length = 396
Score = 149 bits (376), Expect = 1e-35 Identities = 69/95 (72%), Positives = 77/95 (81%) Frame = +1
Query: 289 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 468 A+EKFER KPHVN+GTIGHVDHGK ++ G A K+YD+IDAAPEE+ARGI Sbjct: 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAAKFGGAAKKYDEIDAAPEEKARGI 61
Query: 469 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 TINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGA 96
>sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tuf1 PE=3 SV=1 Length = 396
Score = 149 bits (376), Expect = 1e-35 Identities = 69/95 (72%), Positives = 77/95 (81%) Frame = +1
Query: 289 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 468 A+EKFER KPHVN+GTIGHVDHGK ++ G A K+YD+IDAAPEE+ARGI Sbjct: 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAAKFGGAAKKYDEIDAAPEEKARGI 61
Query: 469 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGA 573 TINTA VEYE+ NRHYAHVDCPGHADYVKNMITGA Sbjct: 62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGA 96
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9AXU2 |
Definition |
tr|Q9AXU2|Q9AXU2_9ROSI Elongation factor Tu OS=Pelargonium graveolens |
Align length |
182 |
Score (bit) |
163.0 |
E-value |
7.0e-39 |
Report |
|