DK955763
Clone id TST39A01NGRL0023_P13
Library
Length 594
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_P13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGAGAGGGCAAGGCAAGGGATCATGGGGAAGAAAGAGGTTCTGCTGGGCTTGCACGAGA
GTGCCGCCCACAATGGGCAGGTGCAGGCATGGGAGGCTGACATCAAGGCCTTTGAGACGC
TCAAGGCAGACTACGAAGATGAGCTTCGCAGAGTCCGCTCCGAGGCCTACCAAGTCGCCA
CTATGTACGCAGTGTTCCAAGGCGTCATCCTCACTGCCATCTCCCAGAGAACACTGCTAA
CCTGCTCACTCTCCTGGAGCCCCGCCTCCATCTCTATCTCCGCCTCCGTCGCCGCATTCC
TAGTCATCGCCGACAAACTCAAGAGCATTGGCGAGGTGGAGGAGGACATTAGAACAACCG
GCTTGAGCATGTCCGCCCTCCAGGGCTGCCTCGACAAGGTCGACGAGGAGGGCTGTGAGC
TCGACCTTGACACTTTTCTTCCTGAGGTGGAGTACCAAAGGTTCGAGTGCGCTGGCTACC
GCTTCATCCTGTCCCGCGACGGCCTGTGTGCTTTGCTTTTTCTCGCCATCTTTTCCTTCG
TTGTCTCTTGCTTTTCCATCATCACCCTCTGCAAGCATTGCTCTCGCTGTAACT
■■Homology search results ■■ -
sp_hit_id P0C2N8
Definition sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora crassa
Align length 37
Score (bit) 34.3
E-value 0.48
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955763|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_P13, 5'
(594 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurosp... 34 0.48
sp|Q4IBN1|VTS1_GIBZE Protein VTS1 OS=Gibberella zeae GN=VTS1 PE=... 32 1.8
sp|Q4WJS2|VTS1_ASPFU Protein vts1 OS=Aspergillus fumigatus GN=vt... 32 3.1
sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesteras... 32 3.2
sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesteras... 32 3.2
sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4... 31 4.1
sp|Q7RZQ3|VTS1_NEUCR Protein VTS1 OS=Neurospora crassa GN=vts-1 ... 31 5.3
sp|Q5BGC4|VTS1_EMENI Protein vts1 OS=Emericella nidulans GN=vts1... 31 5.3
sp|Q3BV19|RL9_XANC5 50S ribosomal protein L9 OS=Xanthomonas camp... 30 7.0
sp|Q8PM12|RL9_XANAC 50S ribosomal protein L9 OS=Xanthomonas axon... 30 7.0
sp|P53557|BIOB_BACSU Biotin synthase OS=Bacillus subtilis GN=bio... 30 7.1
sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6... 30 9.2

>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora
crassa GN=drs-1 PE=3 SV=1
Length = 829

Score = 34.3 bits (77), Expect = 0.48
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -2

Query: 566 GDDGKARDNEGKDGEKK--QSTQAVAGQDEAVASALE 462
G DG+ D+EG+DGEKK + A D++VA+A+E
Sbjct: 216 GVDGEDEDSEGEDGEKKGEDEDEGDASDDDSVATAVE 252


>sp|Q4IBN1|VTS1_GIBZE Protein VTS1 OS=Gibberella zeae GN=VTS1 PE=3
SV=1
Length = 617

Score = 32.3 bits (72), Expect = 1.8
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 15/63 (23%)
Frame = +3

Query: 57 ESAAHNGQVQAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYA 191
ES + + Q W ADI +ET L D++DEL RV SEA + A +YA
Sbjct: 74 ESDSQDKIAQQWIADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYA 133

Query: 192 VFQ 200
+ Q
Sbjct: 134 LLQ 136


>sp|Q4WJS2|VTS1_ASPFU Protein vts1 OS=Aspergillus fumigatus GN=vts1
PE=3 SV=2
Length = 612

Score = 31.6 bits (70), Expect = 3.1
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Frame = +3

Query: 15 QGIMGKKEVLLGLHESAAHNGQ------VQAWEADIKAFET---------LKADYEDELR 149
+ I EV A +N + Q W ADI +ET L D++DEL
Sbjct: 50 RSIRPSSEVYYSQQSQAQNNAEDPLDRAAQQWLADIDQYETTLEEMAAATLDQDFKDELS 109

Query: 150 ------RVRSEAYQVATMYAVFQ 200
RV SEA + A +YA+ Q
Sbjct: 110 AIEQWFRVLSEAERTAALYALLQ 132


>sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesterase
OS=Drosophila pseudoobscura pseudoobscura GN=Pde6 PE=3
SV=2
Length = 1267

Score = 31.6 bits (70), Expect = 3.2
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1

Query: 46 WACTRVPP-TMGRCRHGRLTSRPLRRSRQTTKMSFAESAPRPT---KSPLCTQCSKASSS 213
W R PP + R + + +PL+R T+ + + PT KSP S ASS+
Sbjct: 197 WLTERAPPEALSRLQEFIESRKPLKRPSVTSDLFQQWMSASPTVQQKSPRSLSNSSASST 256

Query: 214 LPSPREH 234
LP R H
Sbjct: 257 LPECRRH 263


>sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesterase
OS=Drosophila persimilis GN=Pde6 PE=3 SV=1
Length = 1276

Score = 31.6 bits (70), Expect = 3.2
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1

Query: 46 WACTRVPP-TMGRCRHGRLTSRPLRRSRQTTKMSFAESAPRPT---KSPLCTQCSKASSS 213
W R PP + R + + +PL+R T+ + + PT KSP S ASS+
Sbjct: 202 WLTERAPPEALSRLQEFIESRKPLKRPSVTSDLFQQWMSASPTVQQKSPRSLSNSSASST 261

Query: 214 LPSPREH 234
LP R H
Sbjct: 262 LPECRRH 268


>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5
OS=Drosophila melanogaster GN=br PE=1 SV=2
Length = 727

Score = 31.2 bits (69), Expect = 4.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1

Query: 163 RPTKSPLCTQCSKASSSLPSPREH 234
RPTK P+C C + SSL S R H
Sbjct: 661 RPTKEPVCNICKRVYSSLNSLRNH 684


>sp|Q7RZQ3|VTS1_NEUCR Protein VTS1 OS=Neurospora crassa GN=vts-1
PE=3 SV=2
Length = 617

Score = 30.8 bits (68), Expect = 5.3
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 15/54 (27%)
Frame = +3

Query: 84 QAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYAVFQ 200
Q W ADI +ET L D++DEL RV SEA + A +YA+ Q
Sbjct: 82 QQWIADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYALLQ 135


>sp|Q5BGC4|VTS1_EMENI Protein vts1 OS=Emericella nidulans GN=vts1
PE=3 SV=1
Length = 611

Score = 30.8 bits (68), Expect = 5.3
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 15/54 (27%)
Frame = +3

Query: 84 QAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYAVFQ 200
Q W ADI +ET L D++DEL RV SEA + A +YA+ Q
Sbjct: 79 QQWLADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYALLQ 132


>sp|Q3BV19|RL9_XANC5 50S ribosomal protein L9 OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=rplI PE=3
SV=1
Length = 149

Score = 30.4 bits (67), Expect = 7.0
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3

Query: 81 VQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILT 215
V A A+++AFET +A+YE + + +EA AT F+G +T
Sbjct: 37 VPATAANVEAFETKRAEYEAKANSILAEAQSRATK---FEGASVT 78


>sp|Q8PM12|RL9_XANAC 50S ribosomal protein L9 OS=Xanthomonas
axonopodis pv. citri GN=rplI PE=3 SV=1
Length = 149

Score = 30.4 bits (67), Expect = 7.0
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3

Query: 81 VQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILT 215
V A A+++AFET +A+YE + + +EA AT F+G +T
Sbjct: 37 VPATAANVEAFETKRAEYEAKANSILAEAQSRATK---FEGASVT 78


tr_hit_id A9SWI8
Definition tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 126
Score (bit) 47.8
E-value 0.0005
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955763|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_P13, 5'
(594 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella paten... 48 5e-04
tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome ... 46 0.002
tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.009
tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.012
tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.012
tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.015
tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.026
tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.045
tr|A9RJ85|A9RJ85_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.077
tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis... 40 0.100
tr|A9RJ86|A9RJ86_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.13
tr|A9ST72|A9ST72_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.38
tr|A9S4D0|A9S4D0_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.38
tr|B4PFW3|B4PFW3_DROYA GE19634 OS=Drosophila yakuba GN=GE19634 P... 38 0.50
tr|A9TR62|A9TR62_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.65
tr|A9TUX5|A9TUX5_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.85
tr|A9RJ83|A9RJ83_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.1
tr|Q9VW54|Q9VW54_DROME Rpn1 OS=Drosophila melanogaster GN=Rpn1 P... 37 1.1
tr|B3NE05|B3NE05_DROER GG16067 OS=Drosophila erecta GN=GG16067 P... 36 1.4
tr|A7ENV1|A7ENV1_SCLS1 Putative uncharacterized protein OS=Scler... 35 3.2
tr|Q4W9I9|Q4W9I9_ASPFU Inositol kinase kinase (UvsB), putative O... 35 4.2
tr|B2VXZ2|B2VXZ2_PYRTR Putative uncharacterized protein OS=Pyren... 35 4.2
tr|B0YE79|B0YE79_ASPFC Inositol kinase kinase (UvsB), putative O... 35 4.2
tr|A1D9E3|A1D9E3_NEOFI Phosphatidylinositol 3-and 4-kinase, puta... 35 4.2
tr|B5HXA4|B5HXA4_9ACTO Integral membrane regulatory protein (Fra... 35 4.3
tr|Q0U7T8|Q0U7T8_PHANO Putative uncharacterized protein OS=Phaeo... 34 5.5
tr|B3MRQ3|B3MRQ3_DROAN GF20955 OS=Drosophila ananassae GN=GF2095... 34 5.6
tr|Q4RGI1|Q4RGI1_TETNG Chromosome undetermined SCAF15099, whole ... 34 7.3
tr|Q4RMZ6|Q4RMZ6_TETNG Chromosome 6 SCAF15017, whole genome shot... 33 9.5

>tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_234246 PE=4 SV=1
Length = 463

Score = 47.8 bits (112), Expect = 5e-04
Identities = 29/126 (23%), Positives = 54/126 (42%)
Frame = +3

Query: 36 EVLLGLHESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILT 215
++L + S H ++ WEA + + +++E YQ+ Y+VFQGV+LT
Sbjct: 193 KILRWIESSTRHKKALEFWEAQDNLCTRRVDNKRKQSLALKNEVYQLIGFYSVFQGVLLT 252

Query: 216 AISQRTLLTCXXXXXXXXXXXXXXXXXXXXXXDKLKSIGEVEEDIRTTGLSMSALQGCLD 395
A+SQ LL C K ++ E+E+ I + +S ++
Sbjct: 253 AVSQSNLLHCNNWGFPFSLSLLASCSAIVGVYLKFAAVWELEKTIESEKMSRQLYVNRIE 312

Query: 396 KVDEEG 413
++ +G
Sbjct: 313 RLRSKG 318


>tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032577001
PE=4 SV=1
Length = 328

Score = 45.8 bits (107), Expect = 0.002
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +3

Query: 57 ESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL 236
+SA Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R
Sbjct: 22 QSAMDENQIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMS 81

Query: 237 LTC 245
L C
Sbjct: 82 LAC 84


>tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172806 PE=4 SV=1
Length = 689

Score = 43.5 bits (101), Expect = 0.009
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3

Query: 90 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 245
WE + + E VR+E YQV Y VFQGVI TA++Q ++L C
Sbjct: 149 WEESFGLHQKRREYKESRRDAVRNEIYQVIGFYVVFQGVIFTAVAQASMLRC 200


>tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_233790 PE=4 SV=1
Length = 220

Score = 43.1 bits (100), Expect = 0.012
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +3

Query: 90 WEADIKAFETLKADYEDELRRVRS-----EAYQVATMYAVFQGVILTAISQRTLLTC 245
WE + K KA Y E++R RS E YQ+ Y+VFQGV+L A++Q + LTC
Sbjct: 36 WENNFK-----KALYRVEVKRERSLNVKNEVYQLIGFYSVFQGVVLGAVAQASTLTC 87


>tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163566 PE=4 SV=1
Length = 233

Score = 43.1 bits (100), Expect = 0.012
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3

Query: 39 VLLGLHESAAHNGQVQAWEADIKAFETLKADYE-DELRRVRSEAYQVATMYAVFQGVILT 215
+L + S H +Q WE A T + D + + ++E YQ+ Y+VFQGV+LT
Sbjct: 38 ILHWIENSERHKKALQFWETQ-DALCTRRVDSKRKQSAAAKNEVYQLIGFYSVFQGVLLT 96

Query: 216 AISQRTLLTC 245
A++Q +L C
Sbjct: 97 AVAQSNMLHC 106


>tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_032202 PE=4 SV=1
Length = 216

Score = 42.7 bits (99), Expect = 0.015
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3

Query: 78 QVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 245
Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R L C
Sbjct: 5 QIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMSLAC 60


>tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_89523 PE=4 SV=1
Length = 257

Score = 42.0 bits (97), Expect = 0.026
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +3

Query: 81 VQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 245
+Q WE+ ++ + + + V++E Y + ++VFQGV+LT +SQ +LL+C
Sbjct: 81 LQEWESKLRDSQDIILRKQTLSLNVKNEIYHLIGFFSVFQGVVLTTVSQASLLSC 135


>tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172807 PE=4 SV=1
Length = 629

Score = 41.2 bits (95), Expect = 0.045
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3

Query: 90 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 245
WE E + E + + +E YQV Y VFQGVI TA++Q ++L C
Sbjct: 147 WEETFNLCEKRRKYKEAQRDAIWNEIYQVIGFYVVFQGVIFTAVAQASMLRC 198


>tr|A9RJ85|A9RJ85_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66853 PE=4 SV=1
Length = 414

Score = 40.4 bits (93), Expect = 0.077
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3

Query: 159 SEAYQVATMYAVFQGVILTAISQRTLLTCXXXXXXXXXXXXXXXXXXXXXXDKLKSIGEV 338
+E YQ+ ++VFQGV+LTA++Q LLTC K K I E+
Sbjct: 116 NEIYQLVGFFSVFQGVLLTAVAQSNLLTCHNWWTAFFLSLLASLVTICGVIQKFKFIIEL 175

Query: 339 EEDIRTTGLS 368
+ ++ + LS
Sbjct: 176 DNNMNSEDLS 185


>tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025154 PE=4 SV=1
Length = 198

Score = 40.0 bits (92), Expect = 0.100
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3

Query: 102 IKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL---LTC 245
++ ++ E+ ++ ++SEA+++A Y +FQGVILTA+S+ ++ +TC
Sbjct: 10 VEEMRSIVEKQEERIQNLQSEAFELANFYFLFQGVILTAVSRASISHPITC 60