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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955770
Clone id TST39A01NGRL0023_P20
Library
Length 629
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_P20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGACTTTCTCCTCTCCCCTGACCATTCCCGCTGCTACAAAAATTGTCAATTCTAAGATC
TCTGTCTCTGCTTGCTCCTGTCTTCTGTGTCTCATCATTTCATCACGCACTGTCACACGC
GCACGGGCGCACTCATATCCCTTGTTCATATGCTTCTCTTGTAGCAAGAGTGGGTCCTTG
CTCTACGCTTTCGACAATCAGCTGAACCCATTAAAGAAGTGATAGGAAGGCTTGCGAGCA
TGGCGTTCTTCTCAAGGTTTTTGTGAGGTTTGAAGGTCCTTCCAAAGGCACGAGCTTAGC
AGTGTAAAGAGTGTTGCCCATTTGGATCAAAGTTACGAGTGTTGCACACGTGCTGTGCTG
ATTGGAGGGCATGGGAGGTGTAATTTCATACGCACAGCAAGAGTGAAAGCTATAACAACA
AAGCCTCAGATCTCCCTGCTGGTTTGTGTAAGAGGAGGAGCCATGGCTACATCAGCATTT
CGCTCTACAACAAGGAGGAACTGCCAGATTAGCGGCTATTCAAGCTCTGCTGAAGGGGGA
GGCATCCCCGCAACCCCCCTGTCGAAAAGGGACCCCTCCCCTAGTGGCAGGGGTTTTCAT
AGAAGGTCCGCCAGCGTGTCAGACTTTTC
■■Homology search results ■■ -
sp_hit_id Q923Y0
Definition sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c OS=Rattus norvegicus
Align length 77
Score (bit) 35.4
E-value 0.24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955770|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_P20, 5'
         (629 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c OS=Rattus...    35   0.24 
sp|Q5QD05|TAA8C_MOUSE Trace amine-associated receptor 8c OS=Mus ...    35   0.24 
sp|Q923Y3|TAA8B_RAT Trace amine-associated receptor 8b OS=Rattus...    35   0.24 
sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b OS=Mus ...    35   0.24 
sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a OS=Rattus...    35   0.24 
sp|Q5QD07|TAA8A_MOUSE Trace amine-associated receptor 8a OS=Mus ...    35   0.24 
sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 OS=Rattus ...    33   1.2  
sp|Q5W8W0|TAAR6_PANTR Trace amine-associated receptor 6 OS=Pan t...    33   1.2  
sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 OS=Homo ...    33   1.2  
sp|O13356|CHS1_CRYNV Chitin synthase 1 OS=Cryptococcus neoforman...    33   1.6  
sp|Q9WTM3|SEM6C_MOUSE Semaphorin-6C OS=Mus musculus GN=Sema6c PE...    32   2.1  
sp|Q9WTL3|SEM6C_RAT Semaphorin-6C OS=Rattus norvegicus GN=Sema6c...    32   2.7  
sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 OS=Homo sa...    32   2.7  
sp|Q70KF0|DOIAD_MICEC 2-deoxy-scyllo-inosamine dehydrogenase OS=...    32   2.7  
sp|Q969N4|TAAR8_HUMAN Trace amine-associated receptor 8 OS=Homo ...    32   3.5  
sp|Q2TA51|KRA55_MOUSE Keratin associated protein 5-5 OS=Mus musc...    32   3.5  
sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus musc...    32   3.5  
sp|Q5QD13|TAAR6_MOUSE Trace amine-associated receptor 6 OS=Mus m...    31   4.6  
sp|Q6IEI0|HXB2A_FUGRU Homeobox protein Hox-B2a OS=Fugu rubripes ...    31   6.0  
sp|Q5NB83|ABIL3_ORYSJ Probable protein ABIL3 OS=Oryza sativa sub...    31   6.0  
sp|Q923X5|TAA7D_RAT Trace amine-associated receptor 7d OS=Rattus...    30   7.8  
sp|Q8BUP8|FA43A_MOUSE Protein FAM43A OS=Mus musculus GN=Fam43a P...    30   7.8  

>sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c OS=Rattus
           norvegicus GN=Taar8c PE=3 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDTFCSLHSCC 110


>sp|Q5QD05|TAA8C_MOUSE Trace amine-associated receptor 8c OS=Mus
           musculus GN=Taar8c PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>sp|Q923Y3|TAA8B_RAT Trace amine-associated receptor 8b OS=Rattus
           norvegicus GN=Taar8b PE=3 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDTFCSLHSCC 110


>sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b OS=Mus
           musculus GN=Taar8b PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a OS=Rattus
           norvegicus GN=Taar8a PE=3 SV=2
          Length = 344

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDTFCSLHSCC 110


>sp|Q5QD07|TAA8A_MOUSE Trace amine-associated receptor 8a OS=Mus
           musculus GN=Taar8a PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 OS=Rattus
           norvegicus GN=Taar6 PE=3 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LA   F+     G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLIASLACADFWV----GVSVMPFSMVRSI 94

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRSFCTFHTCC 111


>sp|Q5W8W0|TAAR6_PANTR Trace amine-associated receptor 6 OS=Pan
           troglodytes GN=TAAR6 PE=3 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   ++  LA     + FL G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLVASLAC----ADFLVGVTVMPFSMVRTV 94

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRSFCTFHTCC 111


>sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 OS=Homo
           sapiens GN=TAAR6 PE=2 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   ++  LA     + FL G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLVASLAC----ADFLVGVTVMPFSMVRTV 94

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRSFCTFHTCC 111


>sp|O13356|CHS1_CRYNV Chitin synthase 1 OS=Cryptococcus neoformans
           var. grubii GN=CHS1 PE=3 SV=1
          Length = 1041

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 375 PMPSNQHSTC-ATLVTLIQMGNTLYTAKLVPL--EGPSNLTKTL 253
           P+PS  HS   A L+TL Q+G  L+T  LV    EGPS++  TL
Sbjct: 438 PLPSPSHSLPNAPLITLSQIGPELFTVCLVTCYSEGPSSIRGTL 481
tr_hit_id Q5Z789
Definition tr|Q5Z789|Q5Z789_ORYSJ Lustrin A-like OS=Oryza sativa subsp. japonica
Align length 52
Score (bit) 36.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955770|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_P20, 5'
         (629 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5Z789|Q5Z789_ORYSJ Lustrin A-like OS=Oryza sativa subsp. jap...    37   1.3  
tr|B2RT38|B2RT38_MOUSE Trace amine-associated receptor 8C OS=Mus...    35   2.8  
tr|B2RT24|B2RT24_MOUSE Trace amine-associated receptor 8B OS=Mus...    35   2.8  
tr|B4USZ8|B4USZ8_OTOGA Trace amine associated receptor 8 (Predic...    35   3.7  
tr|Q5QD18|Q5QD18_RAT Trace amine associated receptor 8c OS=Rattu...    35   4.8  
tr|Q7SBL8|Q7SBL8_NEUCR Predicted protein OS=Neurospora crassa GN...    34   6.3  

>tr|Q5Z789|Q5Z789_ORYSJ Lustrin A-like OS=Oryza sativa subsp.
           japonica GN=P0410C01.33 PE=4 SV=1
          Length = 450

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 21/52 (40%), Positives = 23/52 (44%)
 Frame = +1

Query: 445 CVRGGAMATSAFRSTTRRNCQISGYSSSAEGGGIPATPLSKRDPSPSGRGFH 600
           C RGG   TS  R TTRR  + S  SS+A     P  P S    SP     H
Sbjct: 75  CSRGGGRRTSRTRCTTRRGARSSRTSSTAAATAAPTPPTSTSAGSPPPAASH 126


>tr|B2RT38|B2RT38_MOUSE Trace amine-associated receptor 8C OS=Mus
           musculus GN=Taar8c PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>tr|B2RT24|B2RT24_MOUSE Trace amine-associated receptor 8B OS=Mus
           musculus GN=Taar8b PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +3

Query: 126 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 305
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 306 KECCPFGSKLRVLHTCC 356
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>tr|B4USZ8|B4USZ8_OTOGA Trace amine associated receptor 8
           (Predicted) OS=Otolemur garnettii GN=TAAR8 PE=4 SV=1
          Length = 342

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 183 LRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QCKECCPFGSKLRVLHTCC 356
           L F+Q   P   +I  LA     + FL G+ V+P +     + C  FG+K   LH+CC
Sbjct: 57  LHFKQLHSPANFLIASLAC----ADFLVGVTVMPFSMVRSVESCWYFGAKFCTLHSCC 110


>tr|Q5QD18|Q5QD18_RAT Trace amine associated receptor 8c OS=Rattus
           norvegicus GN=Taar8c PE=3 SV=1
          Length = 344

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 174 VLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QCKECCPFGSKLRVLHTC 353
           +  L F+Q   P   +I  LAS    + FL G+ V+P +     + C  FG     LH+C
Sbjct: 54  ISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSIESCWYFGDTFCSLHSC 109

Query: 354 C 356
           C
Sbjct: 110 C 110


>tr|Q7SBL8|Q7SBL8_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU08532 PE=4 SV=1
          Length = 807

 Score = 34.3 bits (77), Expect = 6.3
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 457 GAMATSAFRSTTRRNCQISGYSSSAEGGGIPATPLSKRDP 576
           G   T + R+   R+ +  G+S+ AEGGG P   LSK++P
Sbjct: 548 GHQQTQSCRTAPARSNKTPGFSTQAEGGGEPPVILSKQEP 587