DK955779
Clone id TST39A01NGRL0024_A05
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_A05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTTCAACTGACTCTTTCCCCCCCATACAAGGTATGTAGCGAAGCCATTGGAAACTTGTAG
CGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA
GGCACACATACCCAAGGAAATGAGTAAAGAACGACGTTGGGAGAAGCAGATCGAGCATGA
CGAGCAGCTGCTACACAAGAATATAGAAAGAAAGGAGCAGCAGCAACGTCGACAAGGACA
TTATTTCGCAGAGCTTCCGGCCATAAACATGACATATACACGCACCACCAGCTGCAGGAA
CTCCATGTTGCAGGACTCAGCTTTCGCCCGTGATCAGCATACTCATGTCTCCAGCCTCAA
AGCCAGCAACCTTTTGCAGATTCTACGGAGATGGAGAGCGCAAAGCCTGAAGCAAACCAC
CCTCAGTGGCGCGTCCATGGCGTCGCGCAGATCTGCTGCCCGCTCGCACTCCTGCTTAAG
TTTGGGGCTCACCTTAGCGCCATTGAGGTGCTTAAGCATGCAATTGCATTCTGATGATGA
AGATGAAGGACAAAATGGAGCCAAACTTTTAACAGCGCCAAGCCGTGGAA
■■Homology search results ■■ -
sp_hit_id Q86U86
Definition sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens
Align length 66
Score (bit) 36.2
E-value 0.13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955779|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_A05, 5'
(590 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1... 36 0.13
sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM... 35 0.21
sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1... 33 0.81
sp|Q6NS45|CCD66_MOUSE Coiled-coil domain-containing protein 66 O... 33 1.1
sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120 OS=Arabidopsi... 33 1.4
sp|A2RUB6|CCD66_HUMAN Coiled-coil domain-containing protein 66 O... 32 2.4
sp|Q04791|SASB_ANAPL Fatty acyl-CoA hydrolase precursor, medium ... 32 3.1
sp|Q6BSZ4|PACC_DEBHA pH-response transcription factor pacC/RIM10... 31 4.0
sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291... 31 5.3
sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1 OS=Dro... 31 5.3
sp|Q8MY86|FGFR1_DUGJA Fibroblast growth factor receptor 1 OS=Dug... 30 6.9
sp|P36080|RRP14_YEAST Ribosomal RNA-processing protein 14 OS=Sac... 30 9.0
sp|O93829|PGTA_CANAL Geranylgeranyl transferase type-2 subunit a... 30 9.0
sp|Q5RBD6|CCD66_PONAB Coiled-coil domain-containing protein 66 O... 30 9.0
sp|Q55DE7|ATX2_DICDI Ataxin-2 homolog OS=Dictyostelium discoideu... 30 9.0

>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1
SV=1
Length = 1689

Score = 36.2 bits (82), Expect = 0.13
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2

Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289
++T H+ ++ KER+ + E +E L + E++E ++ A L ++ TY++
Sbjct: 892 SYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDC 951

Query: 290 SCRNSM 307
S +NSM
Sbjct: 952 SFKNSM 957


>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1
PE=1 SV=1
Length = 1633

Score = 35.4 bits (80), Expect = 0.21
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +2

Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289
++T H+ ++ KE++ + E +E L + E++E ++ A L +++ TY++
Sbjct: 890 SYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGSAGLSSLHRTYSQDC 949

Query: 290 SCRNSM 307
S +NSM
Sbjct: 950 SFKNSM 955


>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1
SV=3
Length = 1634

Score = 33.5 bits (75), Expect = 0.81
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +2

Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289
++T H+ ++ KE++ + E +E L + E++E ++ L ++ TY++
Sbjct: 892 SYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGTTGLSGLHRTYSQDC 951

Query: 290 SCRNSM 307
S +NSM
Sbjct: 952 SFKNSM 957


>sp|Q6NS45|CCD66_MOUSE Coiled-coil domain-containing protein 66
OS=Mus musculus GN=Ccdc66 PE=1 SV=3
Length = 935

Score = 33.1 bits (74), Expect = 1.1
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2

Query: 146 KERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAF 325
+ERR +KQ+EH + ++ + E + +++ + E + + R ++
Sbjct: 454 RERRRQKQLEHQKAIMAQVEENRRKKRLEEEQRKKEEQELELRLAREREEMQRQYEEDIL 513

Query: 326 ARDQHTHVSSLKASNLLQILRRWR--AQSLKQ 415
+ Q + +LK + L ++R + AQ LKQ
Sbjct: 514 KQRQREEIMTLKTNELFHTMQRAQELAQRLKQ 545


>sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120 OS=Arabidopsis
thaliana GN=BHLH120 PE=3 SV=1
Length = 209

Score = 32.7 bits (73), Expect = 1.4
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +2

Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPA-INMTYTRT 286
T Q+H+P+E + ++ +++LLH+NIER+ +Q+ FA L + + + Y +
Sbjct: 10 TRHQSHMPQERDETKK-------EKKLLHRNIERQRRQE--MAILFASLRSQLPLKYIKA 60

Query: 287 TSCRNSMLQDS------AFARDQHTHVSSLKA 364
S + +F +D T + L A
Sbjct: 61 LSSQGKRAMSDHVNGAVSFIKDTQTRIKDLSA 92


>sp|A2RUB6|CCD66_HUMAN Coiled-coil domain-containing protein 66
OS=Homo sapiens GN=CCDC66 PE=1 SV=4
Length = 948

Score = 32.0 bits (71), Expect = 2.4
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2

Query: 146 KERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAF 325
++RR +KQ+EH + + + E++ ++Q + E + + ++
Sbjct: 457 RDRRRQKQLEHQKAITAQVEEKRRKKQLEEEQRKKEEQEEELRLAQEREEMQKQYEEDIL 516

Query: 326 ARDQHTHVSSLKASNLLQILRRWR--AQSLKQ 415
+ Q + +LK + L Q ++R + AQ LKQ
Sbjct: 517 KQKQKEEIMTLKTNELFQTMQRAQELAQRLKQ 548


>sp|Q04791|SASB_ANAPL Fatty acyl-CoA hydrolase precursor, medium
chain OS=Anas platyrhynchos PE=1 SV=1
Length = 557

Score = 31.6 bits (70), Expect = 3.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1

Query: 236 LVDVAAAPFFLYSCVAAARHARSASPNVVLYSF 138
L+D A P F++S V ARH R A V Y F
Sbjct: 409 LLDSIADPLFVFSAVEVARHHRDAGNPVYFYEF 441


>sp|Q6BSZ4|PACC_DEBHA pH-response transcription factor pacC/RIM101
OS=Debaryomyces hansenii GN=RIM101 PE=3 SV=2
Length = 617

Score = 31.2 bits (69), Expect = 4.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2

Query: 113 HTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHY 244
H H PK++ K R +Q EHD + +++ EQ+Q RQ H+
Sbjct: 251 HADDH-PKKLKKAHR-RQQEEHDHEREYEHEHEHEQEQYRQSHF 292


>sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291608
OS=Dictyostelium discoideum GN=DDB_G0291608 PE=4 SV=1
Length = 919

Score = 30.8 bits (68), Expect = 5.3
Identities = 11/43 (25%), Positives = 29/43 (67%)
Frame = +2

Query: 107 HTHTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQ 235
HT Q I ++ +++ ++++Q + +QL + ++++QQQ++Q
Sbjct: 508 HTQQQTTIQQQQNQQHQYQQQYQQLQQLQQQQQQQQQQQQQQQ 550


>sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1
OS=Drosophila melanogaster GN=pnt PE=2 SV=1
Length = 623

Score = 30.8 bits (68), Expect = 5.3
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +2

Query: 107 HTHTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMT---- 274
H+H H ++ ++++ ++H +Q ++ + +QQQ+ A+LP ++
Sbjct: 97 HSH---HTMQQQLQQQQQSLLLQHPQQQQQQHSHQSQQQQQHGYGSSAQLPHHRLSGGST 153

Query: 275 -YTRTTSCRNSMLQDSAFARDQHTHVSSLKASNLLQILRRWRAQSL 409
T TTS +S S+ A Q S A+NL+ L A SL
Sbjct: 154 GSTTTTSSGSSSSGSSSSASSQGFANGSATANNLVGALSSSTAASL 199


tr_hit_id Q9NUX9
Definition tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824 OS=Homo sapiens
Align length 66
Score (bit) 36.2
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955779|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_A05, 5'
(590 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824 OS=... 36 1.4
tr|B4LBK3|B4LBK3_DROVI GJ11337 OS=Drosophila virilis GN=GJ11337 ... 36 1.9
tr|A7AW30|A7AW30_BABBO Adenosylhomocysteinase (S-adenosyl-L-homo... 35 2.4
tr|B4MJN3|B4MJN3_DROWI GK20862 OS=Drosophila willistoni GN=GK208... 35 4.1
tr|A9VZY8|A9VZY8_METEP Integrase family protein OS=Methylobacter... 34 5.4
tr|Q54XM5|Q54XM5_DICDI Putative uncharacterized protein OS=Dicty... 34 5.4
tr|A7TQH3|A7TQH3_VANPO Putative uncharacterized protein OS=Vande... 34 5.4
tr|Q0VPL1|Q0VPL1_ALCBS Putative uncharacterized protein OS=Alcan... 34 7.1
tr|O30328|O30328_ACEEU Aldehyde dehydrogenase subunit III OS=Ace... 34 7.1
tr|A8J795|A8J795_CHLRE Flagellar/basal body protein (Fragment) O... 34 7.1
tr|Q7YYM3|Q7YYM3_CRYPV Putative uncharacterized protein OS=Crypt... 34 7.1
tr|Q5CWQ4|Q5CWQ4_CRYPV Putative uncharacterized protein OS=Crypt... 34 7.1
tr|Q3U0E6|Q3U0E6_MOUSE Putative uncharacterized protein OS=Mus m... 30 7.4
tr|Q54L33|Q54L33_DICDI Putative uncharacterized protein OS=Dicty... 33 9.2
tr|B4K0B9|B4K0B9_DROGR GH23565 OS=Drosophila grimshawi GN=GH2356... 33 9.2
tr|Q6CWM1|Q6CWM1_KLULA KLLA0B03047p OS=Kluyveromyces lactis GN=K... 33 9.2
tr|B2ATH8|B2ATH8_PODAN Predicted CDS Pa_1_15910 OS=Podospora ans... 33 9.2

>tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824
OS=Homo sapiens PE=2 SV=1
Length = 289

Score = 36.2 bits (82), Expect = 1.4
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2

Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289
++T H+ ++ KER+ + E +E L + E++E ++ A L ++ TY++
Sbjct: 49 SYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDC 108

Query: 290 SCRNSM 307
S +NSM
Sbjct: 109 SFKNSM 114


>tr|B4LBK3|B4LBK3_DROVI GJ11337 OS=Drosophila virilis GN=GJ11337
PE=4 SV=1
Length = 644

Score = 35.8 bits (81), Expect = 1.9
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Frame = +2

Query: 140 MSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAEL----PAINMTYTRTTS 292
+ ++++ ++Q++H +Q+ H ++ QQQ++Q H+FA++ P TYT S
Sbjct: 347 LQQQQQQQQQMQHMQQMQHMQQMQQMQQQQQQQHHFAQVQQQHPVAGPTYTHCCS 401


>tr|A7AW30|A7AW30_BABBO Adenosylhomocysteinase
(S-adenosyl-L-homocysteinehydrolase) OS=Babesia bovis
GN=BBOV_I001740 PE=3 SV=1
Length = 491

Score = 35.4 bits (80), Expect = 2.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1

Query: 290 WWCVYMSCLWPEALRNNVLVDVAAAPFFL--YSCVAAARHARSAS 162
WWCVY S WP A ++VD + + + Y RHA+ S
Sbjct: 121 WWCVYQSLRWPNADGPQLIVDDGCSAYTMIKYGLDLERRHAKDGS 165


>tr|B4MJN3|B4MJN3_DROWI GK20862 OS=Drosophila willistoni GN=GK20862
PE=4 SV=1
Length = 858

Score = 34.7 bits (78), Expect = 4.1
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Frame = +2

Query: 110 THTQA----HIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQ-------GHYFAEL 256
+HTQ H ++ K EK H +Q H+N+ QQQ++Q H A
Sbjct: 630 SHTQKQRKQHKDHQLDKHSHEEKHNNHHQQYQHQNLNHHHQQQQQQHEHQHQSHHQQARR 689

Query: 257 PAI--NMTYTRTTSCRNSMLQDSAFARDQHTHVSSLKASNLLQILRRW 394
I + + R T S T SSL A+ +L I +R+
Sbjct: 690 RRIRESQSLDRITEAETEACSSSITTTTTTTTASSLSATTILHIDQRY 737


>tr|A9VZY8|A9VZY8_METEP Integrase family protein OS=Methylobacterium
extorquens (strain PA1) GN=Mext_0473 PE=4 SV=1
Length = 377

Score = 34.3 bits (77), Expect = 5.4
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2

Query: 137 EMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTR 283
E KE RWE Q++ ++ LLH N E +EQ +R+ ++P I + Y R
Sbjct: 208 EAVKELRWE-QVDFEDGLLHLNPEEREQTSKRRP--VVKMPPILIAYLR 253


>tr|Q54XM5|Q54XM5_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0206235 PE=4 SV=1
Length = 918

Score = 34.3 bits (77), Expect = 5.4
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +2

Query: 119 QAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCR 298
Q HI +++ ++++ ++ ++ +Q + ++++QQQ++Q H PA T T TTS
Sbjct: 96 QQHINQQLLQQQQ-QQLLQQQQQQQQQQQQQQQQQQQQQQHTTTTTPATTTTTTTTTSSS 154

Query: 299 NS 304
+S
Sbjct: 155 SS 156


>tr|A7TQH3|A7TQH3_VANPO Putative uncharacterized protein
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=Kpol_472p5 PE=4 SV=1
Length = 1337

Score = 34.3 bits (77), Expect = 5.4
Identities = 19/91 (20%), Positives = 48/91 (52%)
Frame = +2

Query: 107 HTHTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRT 286
H+++Q + ++ +++ ++Q++H Q H+ ++++QQ + Q + + R+
Sbjct: 244 HSNSQGYTQQQQQQQQHQQQQVQHQHQYQHQQQQQQQQQHQLQSQSSQQFDPHHK--RRS 301

Query: 287 TSCRNSMLQDSAFARDQHTHVSSLKASNLLQ 379
S +S L+ +F H+ +S KAS ++
Sbjct: 302 MSISSSTLK--SFKSSFHSKSNSRKASQKIE 330


>tr|Q0VPL1|Q0VPL1_ALCBS Putative uncharacterized protein
OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573) GN=ABO_1439 PE=4 SV=1
Length = 205

Score = 33.9 bits (76), Expect = 7.1
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2

Query: 128 IPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTR--TTSCRN 301
+ + KER EKQI E+ L K E QQ +RQ YFA+L + Y TT+ +
Sbjct: 20 LAERFDKER--EKQIAQLEKQLEKVRESLNQQLKRQREYFAKLEKLQAEYREKATTTIKR 77

Query: 302 SMLQDSAFARDQHTHVSSLKA 364
+ + A D V +A
Sbjct: 78 QLDRARKTADDTRKQVDDSEA 98


>tr|O30328|O30328_ACEEU Aldehyde dehydrogenase subunit III
OS=Acetobacter europaeus GN=aldG PE=4 SV=1
Length = 157

Score = 33.9 bits (76), Expect = 7.1
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1

Query: 301 LHVAGLSFRP*SAYSCLQPQSQQPFADSTEMESAKPEANHP---QWRVHGVAQICCPLAL 471
+H+ G + R SC+ P S AD T +E PE NHP WR +I P
Sbjct: 48 IHIGGRATR-----SCVTPVSAAEGADITTIEGIDPEGNHPVQQAWR-----EIQVPQCG 97

Query: 472 LLKFGAHLSAIEVLK 516
+ G + A+ +LK
Sbjct: 98 YCQSGQIMQAVSLLK 112


>tr|A8J795|A8J795_CHLRE Flagellar/basal body protein (Fragment)
OS=Chlamydomonas reinhardtii GN=FBB9 PE=4 SV=1
Length = 218

Score = 33.9 bits (76), Expect = 7.1
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2

Query: 137 EMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQD 316
E+ + +E++ E EQ + +K ++ QG + E P + R + RN L
Sbjct: 38 EVIRREEFEQRKEASEQARQARLNKKPKKLASQGKHVEEFPLLQALKDREEAVRNGKLTT 97

Query: 317 SAFARDQHT 343
F RD+++
Sbjct: 98 IVFIRDKNS 106