| DK955779 |
| Clone id |
TST39A01NGRL0024_A05 |
| Library |
TST39 |
| Length |
590 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_A05. 5' end sequence. |
| Accession |
DK955779 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL677Contig1 |
| Sequence |
CTTCAACTGACTCTTTCCCCCCCATACAAGGTATGTAGCGAAGCCATTGGAAACTTGTAG CGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA GGCACACATACCCAAGGAAATGAGTAAAGAACGACGTTGGGAGAAGCAGATCGAGCATGA CGAGCAGCTGCTACACAAGAATATAGAAAGAAAGGAGCAGCAGCAACGTCGACAAGGACA TTATTTCGCAGAGCTTCCGGCCATAAACATGACATATACACGCACCACCAGCTGCAGGAA CTCCATGTTGCAGGACTCAGCTTTCGCCCGTGATCAGCATACTCATGTCTCCAGCCTCAA AGCCAGCAACCTTTTGCAGATTCTACGGAGATGGAGAGCGCAAAGCCTGAAGCAAACCAC CCTCAGTGGCGCGTCCATGGCGTCGCGCAGATCTGCTGCCCGCTCGCACTCCTGCTTAAG TTTGGGGCTCACCTTAGCGCCATTGAGGTGCTTAAGCATGCAATTGCATTCTGATGATGA AGATGAAGGACAAAATGGAGCCAAACTTTTAACAGCGCCAAGCCGTGGAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q86U86 |
| Definition |
sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens |
| Align length |
66 |
| Score (bit) |
36.2 |
| E-value |
0.13 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955779|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_A05, 5' (590 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1... 36 0.13 sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM... 35 0.21 sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1... 33 0.81 sp|Q6NS45|CCD66_MOUSE Coiled-coil domain-containing protein 66 O... 33 1.1 sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120 OS=Arabidopsi... 33 1.4 sp|A2RUB6|CCD66_HUMAN Coiled-coil domain-containing protein 66 O... 32 2.4 sp|Q04791|SASB_ANAPL Fatty acyl-CoA hydrolase precursor, medium ... 32 3.1 sp|Q6BSZ4|PACC_DEBHA pH-response transcription factor pacC/RIM10... 31 4.0 sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291... 31 5.3 sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1 OS=Dro... 31 5.3 sp|Q8MY86|FGFR1_DUGJA Fibroblast growth factor receptor 1 OS=Dug... 30 6.9 sp|P36080|RRP14_YEAST Ribosomal RNA-processing protein 14 OS=Sac... 30 9.0 sp|O93829|PGTA_CANAL Geranylgeranyl transferase type-2 subunit a... 30 9.0 sp|Q5RBD6|CCD66_PONAB Coiled-coil domain-containing protein 66 O... 30 9.0 sp|Q55DE7|ATX2_DICDI Ataxin-2 homolog OS=Dictyostelium discoideu... 30 9.0
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1 Length = 1689
Score = 36.2 bits (82), Expect = 0.13 Identities = 18/66 (27%), Positives = 36/66 (54%) Frame = +2
Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289 ++T H+ ++ KER+ + E +E L + E++E ++ A L ++ TY++ Sbjct: 892 SYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDC 951
Query: 290 SCRNSM 307 S +NSM Sbjct: 952 SFKNSM 957
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1 Length = 1633
Score = 35.4 bits (80), Expect = 0.21 Identities = 17/66 (25%), Positives = 37/66 (56%) Frame = +2
Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289 ++T H+ ++ KE++ + E +E L + E++E ++ A L +++ TY++ Sbjct: 890 SYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGSAGLSSLHRTYSQDC 949
Query: 290 SCRNSM 307 S +NSM Sbjct: 950 SFKNSM 955
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=3 Length = 1634
Score = 33.5 bits (75), Expect = 0.81 Identities = 16/66 (24%), Positives = 35/66 (53%) Frame = +2
Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289 ++T H+ ++ KE++ + E +E L + E++E ++ L ++ TY++ Sbjct: 892 SYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGTTGLSGLHRTYSQDC 951
Query: 290 SCRNSM 307 S +NSM Sbjct: 952 SFKNSM 957
>sp|Q6NS45|CCD66_MOUSE Coiled-coil domain-containing protein 66 OS=Mus musculus GN=Ccdc66 PE=1 SV=3 Length = 935
Score = 33.1 bits (74), Expect = 1.1 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Frame = +2
Query: 146 KERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAF 325 +ERR +KQ+EH + ++ + E + +++ + E + + R ++ Sbjct: 454 RERRRQKQLEHQKAIMAQVEENRRKKRLEEEQRKKEEQELELRLAREREEMQRQYEEDIL 513
Query: 326 ARDQHTHVSSLKASNLLQILRRWR--AQSLKQ 415 + Q + +LK + L ++R + AQ LKQ Sbjct: 514 KQRQREEIMTLKTNELFHTMQRAQELAQRLKQ 545
>sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=3 SV=1 Length = 209
Score = 32.7 bits (73), Expect = 1.4 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Frame = +2
Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPA-INMTYTRT 286 T Q+H+P+E + ++ +++LLH+NIER+ +Q+ FA L + + + Y + Sbjct: 10 TRHQSHMPQERDETKK-------EKKLLHRNIERQRRQE--MAILFASLRSQLPLKYIKA 60
Query: 287 TSCRNSMLQDS------AFARDQHTHVSSLKA 364 S + +F +D T + L A Sbjct: 61 LSSQGKRAMSDHVNGAVSFIKDTQTRIKDLSA 92
>sp|A2RUB6|CCD66_HUMAN Coiled-coil domain-containing protein 66 OS=Homo sapiens GN=CCDC66 PE=1 SV=4 Length = 948
Score = 32.0 bits (71), Expect = 2.4 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Frame = +2
Query: 146 KERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQDSAF 325 ++RR +KQ+EH + + + E++ ++Q + E + + ++ Sbjct: 457 RDRRRQKQLEHQKAITAQVEEKRRKKQLEEEQRKKEEQEEELRLAQEREEMQKQYEEDIL 516
Query: 326 ARDQHTHVSSLKASNLLQILRRWR--AQSLKQ 415 + Q + +LK + L Q ++R + AQ LKQ Sbjct: 517 KQKQKEEIMTLKTNELFQTMQRAQELAQRLKQ 548
>sp|Q04791|SASB_ANAPL Fatty acyl-CoA hydrolase precursor, medium chain OS=Anas platyrhynchos PE=1 SV=1 Length = 557
Score = 31.6 bits (70), Expect = 3.1 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -1
Query: 236 LVDVAAAPFFLYSCVAAARHARSASPNVVLYSF 138 L+D A P F++S V ARH R A V Y F Sbjct: 409 LLDSIADPLFVFSAVEVARHHRDAGNPVYFYEF 441
>sp|Q6BSZ4|PACC_DEBHA pH-response transcription factor pacC/RIM101 OS=Debaryomyces hansenii GN=RIM101 PE=3 SV=2 Length = 617
Score = 31.2 bits (69), Expect = 4.0 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +2
Query: 113 HTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHY 244 H H PK++ K R +Q EHD + +++ EQ+Q RQ H+ Sbjct: 251 HADDH-PKKLKKAHR-RQQEEHDHEREYEHEHEHEQEQYRQSHF 292
>sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291608 OS=Dictyostelium discoideum GN=DDB_G0291608 PE=4 SV=1 Length = 919
Score = 30.8 bits (68), Expect = 5.3 Identities = 11/43 (25%), Positives = 29/43 (67%) Frame = +2
Query: 107 HTHTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQ 235 HT Q I ++ +++ ++++Q + +QL + ++++QQQ++Q Sbjct: 508 HTQQQTTIQQQQNQQHQYQQQYQQLQQLQQQQQQQQQQQQQQQ 550
>sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1 OS=Drosophila melanogaster GN=pnt PE=2 SV=1 Length = 623
Score = 30.8 bits (68), Expect = 5.3 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Frame = +2
Query: 107 HTHTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMT---- 274 H+H H ++ ++++ ++H +Q ++ + +QQQ+ A+LP ++ Sbjct: 97 HSH---HTMQQQLQQQQQSLLLQHPQQQQQQHSHQSQQQQQHGYGSSAQLPHHRLSGGST 153
Query: 275 -YTRTTSCRNSMLQDSAFARDQHTHVSSLKASNLLQILRRWRAQSL 409 T TTS +S S+ A Q S A+NL+ L A SL Sbjct: 154 GSTTTTSSGSSSSGSSSSASSQGFANGSATANNLVGALSSSTAASL 199
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q9NUX9 |
| Definition |
tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824 OS=Homo sapiens |
| Align length |
66 |
| Score (bit) |
36.2 |
| E-value |
1.4 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955779|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_A05, 5' (590 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824 OS=... 36 1.4 tr|B4LBK3|B4LBK3_DROVI GJ11337 OS=Drosophila virilis GN=GJ11337 ... 36 1.9 tr|A7AW30|A7AW30_BABBO Adenosylhomocysteinase (S-adenosyl-L-homo... 35 2.4 tr|B4MJN3|B4MJN3_DROWI GK20862 OS=Drosophila willistoni GN=GK208... 35 4.1 tr|A9VZY8|A9VZY8_METEP Integrase family protein OS=Methylobacter... 34 5.4 tr|Q54XM5|Q54XM5_DICDI Putative uncharacterized protein OS=Dicty... 34 5.4 tr|A7TQH3|A7TQH3_VANPO Putative uncharacterized protein OS=Vande... 34 5.4 tr|Q0VPL1|Q0VPL1_ALCBS Putative uncharacterized protein OS=Alcan... 34 7.1 tr|O30328|O30328_ACEEU Aldehyde dehydrogenase subunit III OS=Ace... 34 7.1 tr|A8J795|A8J795_CHLRE Flagellar/basal body protein (Fragment) O... 34 7.1 tr|Q7YYM3|Q7YYM3_CRYPV Putative uncharacterized protein OS=Crypt... 34 7.1 tr|Q5CWQ4|Q5CWQ4_CRYPV Putative uncharacterized protein OS=Crypt... 34 7.1 tr|Q3U0E6|Q3U0E6_MOUSE Putative uncharacterized protein OS=Mus m... 30 7.4 tr|Q54L33|Q54L33_DICDI Putative uncharacterized protein OS=Dicty... 33 9.2 tr|B4K0B9|B4K0B9_DROGR GH23565 OS=Drosophila grimshawi GN=GH2356... 33 9.2 tr|Q6CWM1|Q6CWM1_KLULA KLLA0B03047p OS=Kluyveromyces lactis GN=K... 33 9.2 tr|B2ATH8|B2ATH8_PODAN Predicted CDS Pa_1_15910 OS=Podospora ans... 33 9.2
>tr|Q9NUX9|Q9NUX9_HUMAN cDNA FLJ11064 fis, clone PLACE1004824 OS=Homo sapiens PE=2 SV=1 Length = 289
Score = 36.2 bits (82), Expect = 1.4 Identities = 18/66 (27%), Positives = 36/66 (54%) Frame = +2
Query: 110 THTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTT 289 ++T H+ ++ KER+ + E +E L + E++E ++ A L ++ TY++ Sbjct: 49 SYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDC 108
Query: 290 SCRNSM 307 S +NSM Sbjct: 109 SFKNSM 114
>tr|B4LBK3|B4LBK3_DROVI GJ11337 OS=Drosophila virilis GN=GJ11337 PE=4 SV=1 Length = 644
Score = 35.8 bits (81), Expect = 1.9 Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Frame = +2
Query: 140 MSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAEL----PAINMTYTRTTS 292 + ++++ ++Q++H +Q+ H ++ QQQ++Q H+FA++ P TYT S Sbjct: 347 LQQQQQQQQQMQHMQQMQHMQQMQQMQQQQQQQHHFAQVQQQHPVAGPTYTHCCS 401
>tr|A7AW30|A7AW30_BABBO Adenosylhomocysteinase (S-adenosyl-L-homocysteinehydrolase) OS=Babesia bovis GN=BBOV_I001740 PE=3 SV=1 Length = 491
Score = 35.4 bits (80), Expect = 2.4 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -1
Query: 290 WWCVYMSCLWPEALRNNVLVDVAAAPFFL--YSCVAAARHARSAS 162 WWCVY S WP A ++VD + + + Y RHA+ S Sbjct: 121 WWCVYQSLRWPNADGPQLIVDDGCSAYTMIKYGLDLERRHAKDGS 165
>tr|B4MJN3|B4MJN3_DROWI GK20862 OS=Drosophila willistoni GN=GK20862 PE=4 SV=1 Length = 858
Score = 34.7 bits (78), Expect = 4.1 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 13/108 (12%) Frame = +2
Query: 110 THTQA----HIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQ-------GHYFAEL 256 +HTQ H ++ K EK H +Q H+N+ QQQ++Q H A Sbjct: 630 SHTQKQRKQHKDHQLDKHSHEEKHNNHHQQYQHQNLNHHHQQQQQQHEHQHQSHHQQARR 689
Query: 257 PAI--NMTYTRTTSCRNSMLQDSAFARDQHTHVSSLKASNLLQILRRW 394 I + + R T S T SSL A+ +L I +R+ Sbjct: 690 RRIRESQSLDRITEAETEACSSSITTTTTTTTASSLSATTILHIDQRY 737
>tr|A9VZY8|A9VZY8_METEP Integrase family protein OS=Methylobacterium extorquens (strain PA1) GN=Mext_0473 PE=4 SV=1 Length = 377
Score = 34.3 bits (77), Expect = 5.4 Identities = 19/49 (38%), Positives = 29/49 (59%) Frame = +2
Query: 137 EMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTR 283 E KE RWE Q++ ++ LLH N E +EQ +R+ ++P I + Y R Sbjct: 208 EAVKELRWE-QVDFEDGLLHLNPEEREQTSKRRP--VVKMPPILIAYLR 253
>tr|Q54XM5|Q54XM5_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0206235 PE=4 SV=1 Length = 918
Score = 34.3 bits (77), Expect = 5.4 Identities = 17/62 (27%), Positives = 37/62 (59%) Frame = +2
Query: 119 QAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCR 298 Q HI +++ ++++ ++ ++ +Q + ++++QQQ++Q H PA T T TTS Sbjct: 96 QQHINQQLLQQQQ-QQLLQQQQQQQQQQQQQQQQQQQQQQHTTTTTPATTTTTTTTTSSS 154
Query: 299 NS 304 +S Sbjct: 155 SS 156
>tr|A7TQH3|A7TQH3_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_472p5 PE=4 SV=1 Length = 1337
Score = 34.3 bits (77), Expect = 5.4 Identities = 19/91 (20%), Positives = 48/91 (52%) Frame = +2
Query: 107 HTHTQAHIPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRT 286 H+++Q + ++ +++ ++Q++H Q H+ ++++QQ + Q + + R+ Sbjct: 244 HSNSQGYTQQQQQQQQHQQQQVQHQHQYQHQQQQQQQQQHQLQSQSSQQFDPHHK--RRS 301
Query: 287 TSCRNSMLQDSAFARDQHTHVSSLKASNLLQ 379 S +S L+ +F H+ +S KAS ++ Sbjct: 302 MSISSSTLK--SFKSSFHSKSNSRKASQKIE 330
>tr|Q0VPL1|Q0VPL1_ALCBS Putative uncharacterized protein OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ABO_1439 PE=4 SV=1 Length = 205
Score = 33.9 bits (76), Expect = 7.1 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Frame = +2
Query: 128 IPKEMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTR--TTSCRN 301 + + KER EKQI E+ L K E QQ +RQ YFA+L + Y TT+ + Sbjct: 20 LAERFDKER--EKQIAQLEKQLEKVRESLNQQLKRQREYFAKLEKLQAEYREKATTTIKR 77
Query: 302 SMLQDSAFARDQHTHVSSLKA 364 + + A D V +A Sbjct: 78 QLDRARKTADDTRKQVDDSEA 98
>tr|O30328|O30328_ACEEU Aldehyde dehydrogenase subunit III OS=Acetobacter europaeus GN=aldG PE=4 SV=1 Length = 157
Score = 33.9 bits (76), Expect = 7.1 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = +1
Query: 301 LHVAGLSFRP*SAYSCLQPQSQQPFADSTEMESAKPEANHP---QWRVHGVAQICCPLAL 471 +H+ G + R SC+ P S AD T +E PE NHP WR +I P Sbjct: 48 IHIGGRATR-----SCVTPVSAAEGADITTIEGIDPEGNHPVQQAWR-----EIQVPQCG 97
Query: 472 LLKFGAHLSAIEVLK 516 + G + A+ +LK Sbjct: 98 YCQSGQIMQAVSLLK 112
>tr|A8J795|A8J795_CHLRE Flagellar/basal body protein (Fragment) OS=Chlamydomonas reinhardtii GN=FBB9 PE=4 SV=1 Length = 218
Score = 33.9 bits (76), Expect = 7.1 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +2
Query: 137 EMSKERRWEKQIEHDEQLLHKNIERKEQQQRRQGHYFAELPAINMTYTRTTSCRNSMLQD 316 E+ + +E++ E EQ + +K ++ QG + E P + R + RN L Sbjct: 38 EVIRREEFEQRKEASEQARQARLNKKPKKLASQGKHVEEFPLLQALKDREEAVRNGKLTT 97
Query: 317 SAFARDQHT 343 F RD+++ Sbjct: 98 IVFIRDKNS 106
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