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NBDC - LSDB Archive
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DK955798
Clone id TST39A01NGRL0024_A24
Library
Length 596
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_A24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTGATGAATCTGTAGATGTAGGGGCACTACAGTTTACGGCTGCGTTGTGCCTTTTTTGTA
GCAGCGTGATCAAAGATATGTGAGAGTGCCTTGTCGGAAGAATGGGTGCACGTGCTATTA
CCTCCCTCCTGCAGCCGCAATTTTGTTTCACAAATTCATGACAAGGAGAATGCATCATCT
ATAGTGTCTCCCTTTCAAATTATGGAAGAACCAGGCGGCTTTAGACACAGAAGAAGGCAA
AAGCGACCACCCACTTGCAGATTTGGGTGCCTTGGCTGCTTGAATTACAAGAATGCAGCA
GCCCGCCAAGACGAGGCTACTTTGCCCACATGCAGCTACTCCGACGATGACGAGCATCCC
TCCAAGAAGGAACGCTCCTTGGACGACATCTACAAAAATGGGCCTTCCCTGTTTTCCAAT
TTCAAGGCTGTAGATGCTCATGTCAAGTGTGAAGTGGAGTGTGAATCTGAAGTGTTTGAG
AAGACTCCTTACGATAACATGGTATGTAAGGTCTGCAAGAAAGGCGATGCTGATGCTGAG
ATGCTACTTTGTGATGGTTGTGATGAGGGCTTTCATATGTATTGCCTTTGTCCAAT
■■Homology search results ■■ -
sp_hit_id Q5XUN4
Definition sp|Q5XUN4|JAD1D_PANTR Histone demethylase JARID1D OS=Pan troglodytes
Align length 34
Score (bit) 53.9
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955798|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_A24, 5'
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XUN4|JAD1D_PANTR Histone demethylase JARID1D OS=Pan troglod...    54   6e-07
sp|Q9BY66|JAD1D_HUMAN Histone demethylase JARID1D OS=Homo sapien...    54   6e-07
sp|Q8VZJ1|ATXR5_ARATH Histone-lysine N-methyltransferase ATXR5 O...    54   6e-07
sp|Q30DN6|JAD1D_CANFA Histone demethylase JARID1D OS=Canis famil...    54   8e-07
sp|A1YVX4|JAD1C_PIG Histone demethylase JARID1C OS=Sus scrofa GN...    54   8e-07
sp|P41230|JAD1C_MOUSE Histone demethylase JARID1C OS=Mus musculu...    54   8e-07
sp|P41229|JAD1C_HUMAN Histone demethylase JARID1C OS=Homo sapien...    54   8e-07
sp|Q38JA7|JAD1C_CANFA Histone demethylase JARID1C OS=Canis famil...    54   8e-07
sp|Q9VMJ7|JAD1_DROME Histone demethylase lid OS=Drosophila melan...    52   2e-06
sp|Q91YE5|BAZ2A_MOUSE Bromodomain adjacent to zinc finger domain...    52   3e-06
sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain...    51   4e-06
sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protei...    50   7e-06
sp|Q80Y84|JAD1B_MOUSE Histone demethylase JARID1B OS=Mus musculu...    50   1e-05
sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing prot...    49   2e-05
sp|Q6IQX0|JA1BB_DANRE Histone demethylase JARID1B-B OS=Danio rer...    49   3e-05
sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing prot...    48   4e-05
sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain...    48   4e-05
sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain...    48   4e-05
sp|Q62240|JAD1D_MOUSE Histone demethylase JARID1D OS=Mus musculu...    47   6e-05
sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain...    47   6e-05
sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain...    47   6e-05
sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain...    47   6e-05
sp|P58270|DPF3_CHICK Zinc finger protein DPF3 OS=Gallus gallus G...    47   7e-05
sp|Q9FNE9|ATXR6_ARATH Histone-lysine N-methyltransferase ATXR6 O...    47   7e-05
sp|Q9W636|REQUB_XENLA Zinc finger protein ubi-d4 B (Fragment) OS...    47   1e-04
sp|P58269|DPF3_MOUSE Zinc finger protein DPF3 OS=Mus musculus GN...    47   1e-04
sp|Q92784|DPF3_HUMAN Zinc finger protein DPF3 OS=Homo sapiens GN...    47   1e-04
sp|Q3UXZ9|JAD1A_MOUSE Histone demethylase JARID1A OS=Mus musculu...    46   1e-04
sp|P29375|JAD1A_HUMAN Histone demethylase JARID1A OS=Homo sapien...    46   1e-04
sp|Q92785|REQU_HUMAN Zinc finger protein ubi-d4 OS=Homo sapiens ...    46   2e-04

>sp|Q5XUN4|JAD1D_PANTR Histone demethylase JARID1D OS=Pan
           troglodytes GN=JARID1D PE=2 SV=1
          Length = 1535

 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 17/34 (50%), Positives = 27/34 (79%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ +C+VC +GD D ++L CDGCD+ +H++CL P
Sbjct: 313 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP 346


>sp|Q9BY66|JAD1D_HUMAN Histone demethylase JARID1D OS=Homo sapiens
           GN=JARID1D PE=1 SV=2
          Length = 1539

 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 17/34 (50%), Positives = 27/34 (79%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ +C+VC +GD D ++L CDGCD+ +H++CL P
Sbjct: 313 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP 346


>sp|Q8VZJ1|ATXR5_ARATH Histone-lysine N-methyltransferase ATXR5
           OS=Arabidopsis thaliana GN=ATXR5 PE=2 SV=1
          Length = 352

 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 25/47 (53%), Positives = 30/47 (63%)
 Frame = +1

Query: 454 VECESEVFEKTPYDNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           VE E E  E + Y N+ C+ C  G+ D E+LLCD CD GFHM CL P
Sbjct: 51  VEQEEEEDEDS-YSNVTCEKCGSGEGDDELLLCDKCDRGFHMKCLRP 96


>sp|Q30DN6|JAD1D_CANFA Histone demethylase JARID1D OS=Canis
           familiaris GN=JARID1D PE=2 SV=1
          Length = 1545

 Score = 53.5 bits (127), Expect = 8e-07
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D  VC++C +GD D ++LLCDGCD+ +H++CL P
Sbjct: 316 DLYVCRICSRGDEDDKLLLCDGCDDTYHIFCLIP 349


>sp|A1YVX4|JAD1C_PIG Histone demethylase JARID1C OS=Sus scrofa
           GN=JARID1C PE=2 SV=1
          Length = 1516

 Score = 53.5 bits (127), Expect = 8e-07
 Identities = 17/34 (50%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           ++ VC++C +GD D ++LLCDGCD+ +H++CL P
Sbjct: 282 ESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLP 315


>sp|P41230|JAD1C_MOUSE Histone demethylase JARID1C OS=Mus musculus
           GN=Jarid1c PE=2 SV=4
          Length = 1554

 Score = 53.5 bits (127), Expect = 8e-07
 Identities = 17/34 (50%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           ++ VC++C +GD D ++LLCDGCD+ +H++CL P
Sbjct: 323 ESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLP 356


>sp|P41229|JAD1C_HUMAN Histone demethylase JARID1C OS=Homo sapiens
           GN=JARID1C PE=1 SV=2
          Length = 1560

 Score = 53.5 bits (127), Expect = 8e-07
 Identities = 17/34 (50%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           ++ VC++C +GD D ++LLCDGCD+ +H++CL P
Sbjct: 323 ESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLP 356


>sp|Q38JA7|JAD1C_CANFA Histone demethylase JARID1C OS=Canis
           familiaris GN=JARID1C PE=2 SV=1
          Length = 1556

 Score = 53.5 bits (127), Expect = 8e-07
 Identities = 17/34 (50%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           ++ VC++C +GD D ++LLCDGCD+ +H++CL P
Sbjct: 323 ESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLP 356


>sp|Q9VMJ7|JAD1_DROME Histone demethylase lid OS=Drosophila
           melanogaster GN=lid PE=1 SV=1
          Length = 1838

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 487 PYDNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           P    +C +C +GD +  MLLCDGCD+ +H +CL P
Sbjct: 445 PLMKYICHICNRGDVEESMLLCDGCDDSYHTFCLLP 480


>sp|Q91YE5|BAZ2A_MOUSE Bromodomain adjacent to zinc finger domain
            protein 2A OS=Mus musculus GN=Baz2a PE=1 SV=1
          Length = 1850

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +1

Query: 448  CEVECESEVFEKTPYDNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
            C  + E  +  +   + + C VC+KGD D  +LLCDGCD G H+YC  P
Sbjct: 1607 CMGQLERSIAWEKSVNKVTCLVCRKGDNDEFLLLCDGCDRGCHIYCHRP 1655
tr_hit_id Q4S5L9
Definition tr|Q4S5L9|Q4S5L9_TETNG Chromosome 9 SCAF14729, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 49
Score (bit) 56.6
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955798|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_A24, 5'
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4S5L9|Q4S5L9_TETNG Chromosome 9 SCAF14729, whole genome shot...    57   1e-06
tr|B7QJG8|B7QJG8_IXOSC Jumonji/ARID domain-containing protein, p...    55   2e-06
tr|P79353|P79353_HORSE SMCY (Fragment) OS=Equus caballus GN=SMCY...    55   3e-06
tr|B8YE03|B8YE03_MACMU Jumonji AT-rich interactive domain 1D (Fr...    55   3e-06
tr|A7Q2D1|A7Q2D1_VITVI Chromosome chr1 scaffold_46, whole genome...    55   4e-06
tr|B6P0U3|B6P0U3_BRAFL Putative uncharacterized protein (Fragmen...    55   4e-06
tr|A0JM02|A0JM02_XENTR Jumonji, AT rich interactive domain 1C OS...    54   7e-06
tr|Q1AJM5|Q1AJM5_ARATH ATXR5 OS=Arabidopsis thaliana PE=2 SV=1         54   7e-06
tr|Q5RCN2|Q5RCN2_PONAB Putative uncharacterized protein DKFZp469...    54   7e-06
tr|B7ZLX1|B7ZLX1_HUMAN Putative uncharacterized protein OS=Homo ...    54   7e-06
tr|B4E1Y0|B4E1Y0_HUMAN cDNA FLJ61048, highly similar to Jumonji/...    54   7e-06
tr|A6H8V7|A6H8V7_HUMAN JARID1D protein OS=Homo sapiens GN=JARID1...    54   7e-06
tr|B0S6L0|B0S6L0_DANRE Novel protein similar to vertebrate jumon...    54   9e-06
tr|Q9N1Y1|Q9N1Y1_PIG SMCX (Fragment) OS=Sus scrofa GN=SMCX PE=2 ...    54   9e-06
tr|Q8WNS2|Q8WNS2_BOVIN SMCX protein (Fragment) OS=Bos taurus GN=...    54   9e-06
tr|Q5RAJ0|Q5RAJ0_PONAB Putative uncharacterized protein DKFZp468...    54   9e-06
tr|B4E3I2|B4E3I2_HUMAN cDNA FLJ55294, highly similar to Jumonji/...    54   9e-06
tr|B0QZ44|B0QZ44_HUMAN Jumonji, AT rich interactive domain 1C OS...    54   9e-06
tr|A6N6J7|A6N6J7_HUMAN JARID1C protein OS=Homo sapiens GN=JARID1...    54   9e-06
tr|B6MDP7|B6MDP7_BRAFL Putative uncharacterized protein OS=Branc...    53   1e-05
tr|A7QB84|A7QB84_VITVI Chromosome chr4 scaffold_73, whole genome...    53   2e-05
tr|A7RUU7|A7RUU7_NEMVE Predicted protein (Fragment) OS=Nematoste...    53   2e-05
tr|Q4S5Z3|Q4S5Z3_TETNG Chromosome 9 SCAF14729, whole genome shot...    52   2e-05
tr|A5WUR6|A5WUR6_DANRE Novel protein similar to vertebrate Jumon...    52   2e-05
tr|A9TE94|A9TE94_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|Q5N7H9|Q5N7H9_ORYSJ PHD finger protein-like (Putative unchara...    52   3e-05
tr|A7QF04|A7QF04_VITVI Chromosome chr16 scaffold_86, whole genom...    52   3e-05
tr|A2WXN6|A2WXN6_ORYSI Putative uncharacterized protein OS=Oryza...    52   3e-05
tr|B5DH42|B5DH42_DROPS GA25342 OS=Drosophila pseudoobscura pseud...    52   3e-05
tr|B4Q456|B4Q456_DROSI GD22615 OS=Drosophila simulans GN=GD22615...    52   3e-05

>tr|Q4S5L9|Q4S5L9_TETNG Chromosome 9 SCAF14729, whole genome shotgun
            sequence. (Fragment) OS=Tetraodon nigroviridis
            GN=GSTENG00023670001 PE=4 SV=1
          Length = 1464

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = +1

Query: 448  CEVECESEVFEKTPYDNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
            C ++ E  +  +     + C+VC+KGD D  +LLCDGCD G HMYCL P
Sbjct: 1214 CLLQLEKAIAWERSVTRVTCQVCRKGDNDDCLLLCDGCDRGCHMYCLKP 1262


>tr|B7QJG8|B7QJG8_IXOSC Jumonji/ARID domain-containing protein,
           putative OS=Ixodes scapularis GN=IscW_ISCW013765 PE=4
           SV=1
          Length = 1356

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +1

Query: 340 SDDDEHPSKKERSLDDIYKNGPSLFSNFKAVDAHVKCEVECESEVFEKTP-YDNMVCKVC 516
           S+D E   KK+R  D +    PS  +     D   +       E+ E  P  + MVC  C
Sbjct: 4   SEDSEDCDKKDR--DYVPHGIPSRQAIKPPPDRSARRSKRHGKELAEDAPSIEQMVCHTC 61

Query: 517 KKGDADAEMLLCDGCDEGFHMYCLCP 594
            +GD +  MLLCDGCD+ +H +CL P
Sbjct: 62  GRGDDEESMLLCDGCDDSYHTFCLLP 87


>tr|P79353|P79353_HORSE SMCY (Fragment) OS=Equus caballus GN=SMCY
           PE=2 SV=1
          Length = 345

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 18/34 (52%), Positives = 28/34 (82%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ VC++C +GD D ++LLCDGCD+ +H++CL P
Sbjct: 282 DSYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLP 315


>tr|B8YE03|B8YE03_MACMU Jumonji AT-rich interactive domain 1D
           (Fragment) OS=Macaca mulatta GN=JARID1D PE=2 SV=1
          Length = 1195

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 17/34 (50%), Positives = 27/34 (79%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ +C++C +GD D ++L CDGCD+ +H+YCL P
Sbjct: 313 DSYICQICSRGDEDDKLLFCDGCDDNYHIYCLLP 346


>tr|A7Q2D1|A7Q2D1_VITVI Chromosome chr1 scaffold_46, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00028835001
            PE=4 SV=1
          Length = 1733

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = +1

Query: 277  CLNYKNAAARQDEATLPTCSYSDDDEHPSKKERSLDDIYKNGPSLFSNFKAVDAHVKCEV 456
            C+ Y+++    D+ +L      D +   SK+  +L   + +    ++N + ++A  K E+
Sbjct: 755  CIAYRDS----DDISLAEALSKDFESLYSKEVLTLVQKFMS----YANVEFLNAEAKKEL 806

Query: 457  E----CESEVFEKTPYDNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
            E    C  E+  K P+D  +CKVC     D  +LLCD CD  +H YCL P
Sbjct: 807  EDTIACADEI-PKAPWDEGLCKVCGVDKDDDNVLLCDACDSEYHTYCLNP 855


>tr|B6P0U3|B6P0U3_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_240510 PE=4 SV=1
          Length = 237

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +1

Query: 505 CKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           C+ C+KGD +A++LLCDGCD+GFH YC+ P
Sbjct: 4   CQFCRKGDNEAQLLLCDGCDKGFHTYCVKP 33


>tr|A0JM02|A0JM02_XENTR Jumonji, AT rich interactive domain 1C
           OS=Xenopus tropicalis GN=jarid1c PE=2 SV=1
          Length = 1506

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ +C++C +GD D  +LLCDGCD+ +H +CL P
Sbjct: 347 DSYICRICSRGDDDDRLLLCDGCDDNYHTFCLLP 380


>tr|Q1AJM5|Q1AJM5_ARATH ATXR5 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 379

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 25/47 (53%), Positives = 30/47 (63%)
 Frame = +1

Query: 454 VECESEVFEKTPYDNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           VE E E  E + Y N+ C+ C  G+ D E+LLCD CD GFHM CL P
Sbjct: 51  VEQEEEEDEDS-YSNVTCEKCGSGEGDDELLLCDKCDRGFHMKCLRP 96


>tr|Q5RCN2|Q5RCN2_PONAB Putative uncharacterized protein
           DKFZp469B034 (Fragment) OS=Pongo abelii GN=DKFZp469B034
           PE=4 SV=1
          Length = 1088

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 17/34 (50%), Positives = 27/34 (79%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ +C+VC +GD D ++L CDGCD+ +H++CL P
Sbjct: 313 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP 346


>tr|B7ZLX1|B7ZLX1_HUMAN Putative uncharacterized protein OS=Homo
           sapiens PE=2 SV=1
          Length = 1570

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 17/34 (50%), Positives = 27/34 (79%)
 Frame = +1

Query: 493 DNMVCKVCKKGDADAEMLLCDGCDEGFHMYCLCP 594
           D+ +C+VC +GD D ++L CDGCD+ +H++CL P
Sbjct: 313 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP 346