| DK955805 |
| Clone id |
TST39A01NGRL0024_B07 |
| Library |
TST39 |
| Length |
553 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_B07. 5' end sequence. |
| Accession |
DK955805 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
- |
| Sequence |
GCAGGCGCAGCAGCAAGACTCCCGAGTCCTCGGCTACACAATCACATGATCACATCGTTG
TGGCCATTATCGAGAGTCGAGCGGAGGTACGACGCAGACACCAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGTTTCACTGCATGCATCCTTACATGCAAGAAGTTTTGCGCGTGTGTATG
CTTGGCACATTGTGCTTGGACTCAGGTACGTAGGGCTGGCTGCCTTCGACCTGAGGAGCG
CATCTCACAGTCCTATACAAACACCACTACTTTAATGCTGCACCTCTTCGACCCTATTGA
AATCATTGTGCTGCCCTCCGGCACAAATCCCCAAGGCTCGGCAGGCACATTCGGACTCTT
CAATCATGTGCAAGCTAAAAAGGTCAGCTGCATTTTTCTTCTGTCAGCCTACTGGCATGT
CTGGTCTACATCTTCACACCGTAGTAATGACATCCATTCTTTAAGCTCAAGGACGTGTTT
TCCTCCCTCTCTGCAAATTAAAGAGAGAACTAGAACATCTTCTACATATGGATCCTTTAC
TGTGGTCCAGGGT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q8LAS8 |
| Definition |
sp|Q8LAS8|SFGH_ARATH S-formylglutathione hydrolase OS=Arabidopsis thaliana |
| Align length |
78 |
| Score (bit) |
31.2 |
| E-value |
3.5 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955805|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_B07, 5'
(553 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8LAS8|SFGH_ARATH S-formylglutathione hydrolase OS=Arabidopsi... 31 3.5
sp|Q42588|SAT1_ARATH Serine acetyltransferase 1 OS=Arabidopsis t... 31 3.5
sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 O... 31 3.5
sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial O... 31 4.6
sp|P02870|LEC_LENCU Lectin OS=Lens culinaris PE=1 SV=2 30 6.0
sp|Q93X49|LEC_LENCO Lectin OS=Lens culinaris subsp. orientalis P... 30 6.0
sp|Q8VXF2|LEC_LENCT Lectin OS=Lens culinaris subsp. tomentosus P... 30 7.9
sp|Q93WH6|LEC_LENCC Lectin OS=Lens culinaris subsp. culinaris PE... 30 7.9
>sp|Q8LAS8|SFGH_ARATH S-formylglutathione hydrolase OS=Arabidopsis
thaliana GN=SFGH PE=1 SV=2
Length = 284
Score = 31.2 bits (69), Expect = 3.5
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 311 LPSGTNPQGSAGTFGLFNHVQ---AKKVSCIFLLSAYWHVWSTSSHRSNDIHSLSSRTCF 481
+ SG + GS F +N ++ + C S Y+ ++SSH+S ++ LS TC
Sbjct: 1 MASGLSEIGSTKMFDGYNKRYKHFSETLGCSMTFSIYFPPSASSSHKSPVLYWLSGLTCT 60
Query: 482 PPSLQIKE-RTRTSSTYG 532
+ IK R +ST+G
Sbjct: 61 DENFIIKSGAQRAASTHG 78
>sp|Q42588|SAT1_ARATH Serine acetyltransferase 1 OS=Arabidopsis
thaliana GN=SAT1 PE=1 SV=2
Length = 314
Score = 31.2 bits (69), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 131 SFTACILTCKKFCACVC--LAHCAWTQVRRAGCLRPEERISQSY 256
S+ C L K F AC +AH W Q R+ L + R+S+S+
Sbjct: 136 SYVHCFLGFKGFLACQAHRIAHTLWKQNRKIVALLIQNRVSESF 179
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4
OS=Gallus gallus GN=DKC1 PE=2 SV=1
Length = 516
Score = 31.2 bits (69), Expect = 3.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +2
Query: 224 LRPEERISQSYTNTTTLMLHLFDPIEIIV-----LPSGTNP 331
++PE R++Q T+ L+L FD + ++ LPSG NP
Sbjct: 36 IKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANP 76
>sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial
OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3
Length = 391
Score = 30.8 bits (68), Expect = 4.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 131 SFTACILTCKKFCACVC--LAHCAWTQVRRAGCLRPEERISQSY 256
S+ C L K F AC +AH WTQ R+ L + R+S+++
Sbjct: 213 SYVHCFLHFKGFLACQAHRIAHELWTQDRKILALLIQNRVSEAF 256
>sp|P02870|LEC_LENCU Lectin OS=Lens culinaris PE=1 SV=2
Length = 275
Score = 30.4 bits (67), Expect = 6.0
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = +2
Query: 290 DPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLL------SAYWHVWSTSSHRSND 451
D + P T PQ G G+FN + K S + +A W + H D
Sbjct: 111 DEFTFFIAPVDTKPQTGGGYLGVFNSKEYDKTSQTVAVEFDTFYNAAWDPSNKERHIGID 170
Query: 452 IHSLSSRTCFPPSLQIKERTRTSSTYGSFTVV 547
++S+ S +LQ ER + + T V
Sbjct: 171 VNSIKSVNTKSWNLQNGERANVVIAFNAATNV 202
>sp|Q93X49|LEC_LENCO Lectin OS=Lens culinaris subsp. orientalis PE=3
SV=2
Length = 275
Score = 30.4 bits (67), Expect = 6.0
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Frame = +2
Query: 290 DPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLL------SAYWHVWSTSSHRSND 451
D + P T PQ G G+FN + K S + +A W + H D
Sbjct: 111 DGFTFFIAPVDTKPQTGGGYLGVFNSKEYDKTSQTVAVEFDTFYNAAWDPSNKERHIGID 170
Query: 452 IHSLSSRTCFPPSLQIKERTRTSSTYGSFTVV 547
++S+ S + +LQ ER + + T V
Sbjct: 171 VNSIKSVSTKSWNLQNGERANVVIAFNAATNV 202
>sp|Q8VXF2|LEC_LENCT Lectin OS=Lens culinaris subsp. tomentosus PE=3
SV=2
Length = 275
Score = 30.0 bits (66), Expect = 7.9
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = +2
Query: 290 DPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLL------SAYWHVWSTSSHRSND 451
D + P T PQ G G+FN + K S + +A W + H D
Sbjct: 111 DGFTFFIAPVDTKPQTGGGYLGVFNSKEYDKTSQTVAVEFDTFYNAAWDPSNKERHIGID 170
Query: 452 IHSLSSRTCFPPSLQIKERTRTSSTYGSFTVV 547
++S+ S +LQ ER + + T V
Sbjct: 171 VNSIKSVNTKSWNLQNGERANVVIAFNAATNV 202
>sp|Q93WH6|LEC_LENCC Lectin OS=Lens culinaris subsp. culinaris PE=3
SV=2
Length = 275
Score = 30.0 bits (66), Expect = 7.9
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = +2
Query: 290 DPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLL------SAYWHVWSTSSHRSND 451
D + P T PQ G G+FN + K S + +A W + H D
Sbjct: 111 DGFTFFIAPVDTKPQTGGGYLGVFNSKEYDKTSQTVAVEFDTFYNAAWDPSNKERHIGID 170
Query: 452 IHSLSSRTCFPPSLQIKERTRTSSTYGSFTVV 547
++S+ S +LQ ER + + T V
Sbjct: 171 VNSIKSVNTKSWNLQNGERANVVIAFNAATNV 202
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A5AE18 |
| Definition |
tr|A5AE18|A5AE18_VITVI Putative uncharacterized protein OS=Vitis vinifera |
| Align length |
49 |
| Score (bit) |
35.4 |
| E-value |
0.25 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955805|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_B07, 5'
(553 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A5AE18|A5AE18_VITVI Putative uncharacterized protein OS=Vitis... 35 0.25
tr|A9TGP2|A9TGP2_PHYPA Predicted protein OS=Physcomitrella paten... 34 0.41
tr|B8B666|B8B666_ORYSI Putative uncharacterized protein OS=Oryza... 30 0.53
tr|Q4RFX9|Q4RFX9_TETNG Chromosome undetermined SCAF15109, whole ... 35 3.5
tr|Q8H0P5|Q8H0P5_TOBAC Serine acetyltransferase 7 (Fragment) OS=... 34 4.6
tr|A7PEA4|A7PEA4_VITVI Chromosome chr11 scaffold_13, whole genom... 34 4.6
tr|A5C9C1|A5C9C1_VITVI Putative uncharacterized protein OS=Vitis... 34 4.6
tr|Q4RFY0|Q4RFY0_TETNG Chromosome undetermined SCAF15109, whole ... 34 6.0
tr|Q2JDI7|Q2JDI7_FRASC Putative uncharacterized protein OS=Frank... 34 6.0
tr|Q18A95|Q18A95_CLOD6 Glycine betaine/carnitine/choline ABC tra... 34 6.0
tr|Q2A9J6|Q2A9J6_BRAOL Putative uncharacterized protein OS=Brass... 28 6.3
tr|Q6DTM5|Q6DTM5_ARATH MSH4 OS=Arabidopsis thaliana GN=At4g17380... 28 6.6
tr|A8BBY3|A8BBY3_GIALA ATP-dependent RNA helicase A OS=Giardia l... 33 7.7
tr|A9UQ00|A9UQ00_MONBE Predicted protein OS=Monosiga brevicollis... 33 7.8
tr|O23581|O23581_ARATH Putative uncharacterized protein dl4725w ... 27 8.8
>tr|A5AE18|A5AE18_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_008586 PE=4 SV=1
Length = 530
Score = 35.4 bits (80), Expect(2) = 0.25
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 245 SQSYTNTTTLMLHLFDPIEIIVLPSGTNPQGSAGTFGLFN--HVQAKKV 385
S SY NT TL LH +DP+ IIV P+ P G G L + + KKV
Sbjct: 44 SSSYQNTKTL-LHFYDPMVIIVSPNKLAPDGMVGVSELVDRFYFAVKKV 91
Score = 22.3 bits (46), Expect(2) = 0.25
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 210 VGLAAFDLRSAS 245
VG+AAFDLR AS
Sbjct: 23 VGVAAFDLRLAS 34
>tr|A9TGP2|A9TGP2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_145361 PE=3 SV=1
Length = 786
Score = 33.9 bits (76), Expect(2) = 0.41
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 245 SQSYTNTTTLMLHLFDPIEIIVLPSGTNPQGSAGTFGLFNH-VQAKKV 385
S+SY NTTTL L FDP +I+ + PQG G + N A KV
Sbjct: 41 SRSYQNTTTL-LQYFDPTDIVTPANMITPQGIIGLTSVVNQCTSASKV 87
Score = 23.1 bits (48), Expect(2) = 0.41
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 210 VGLAAFDLRSA 242
VGLAAFDLR+A
Sbjct: 20 VGLAAFDLRTA 30
>tr|B8B666|B8B666_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26026 PE=4 SV=1
Length = 798
Score = 30.4 bits (67), Expect(2) = 0.53
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 245 SQSYTNTTTLMLHLFDPIEIIVLPSGTNPQGSAG 346
S SY NT TL LH +DP+ IV P+ T G G
Sbjct: 49 SCSYHNTKTL-LHFYDPMVAIVPPNKTAADGMVG 81
Score = 26.2 bits (56), Expect(2) = 0.53
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 5/24 (20%)
Frame = +3
Query: 189 IVLGL-----RYVGLAAFDLRSAS 245
IV+GL + VG+AAFDLRSAS
Sbjct: 16 IVIGLIENRAKEVGVAAFDLRSAS 39
>tr|Q4RFX9|Q4RFX9_TETNG Chromosome undetermined SCAF15109, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00035122001 PE=4 SV=1
Length = 223
Score = 34.7 bits (78), Expect = 3.5
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +2
Query: 278 LHLFDPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLLSAYWHVWSTSS------- 436
LHL P+E+ LPS + G +G H +C LS YW S +S
Sbjct: 17 LHLNTPVEVHRLPSESLQAGESGILNCTVHTG----TCDEELSVYWFRTSGASEPELIYA 72
Query: 437 HRS-NDIHSLSSRTCFPPSLQIKERTRTSSTY 529
HR+ ND + TCF +L IK T + TY
Sbjct: 73 HRARNDRCKGKNNTCF-YNLSIKNLTSKAGTY 103
>tr|Q8H0P5|Q8H0P5_TOBAC Serine acetyltransferase 7 (Fragment)
OS=Nicotiana tabacum GN=sat7 PE=2 SV=1
Length = 300
Score = 34.3 bits (77), Expect = 4.6
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 131 SFTACILTCKKFCACVC--LAHCAWTQVRRAGCLRPEERISQSY 256
SF+ C+L K F AC +AH WTQ RR L + RIS +
Sbjct: 122 SFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVF 165
>tr|A7PEA4|A7PEA4_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016589001
PE=4 SV=1
Length = 290
Score = 34.3 bits (77), Expect = 4.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 131 SFTACILTCKKFCACVC--LAHCAWTQVRRAGCLRPEERISQSY 256
SF+ C+L K F AC +AH WTQ+RR L + RI+ +
Sbjct: 112 SFSHCLLNYKGFLACQAHRVAHRLWTQMRRPLALALQSRIADVF 155
>tr|A5C9C1|A5C9C1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_002361 PE=4 SV=1
Length = 290
Score = 34.3 bits (77), Expect = 4.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 131 SFTACILTCKKFCACVC--LAHCAWTQVRRAGCLRPEERISQSY 256
SF+ C+L K F AC +AH WTQ+RR L + RI+ +
Sbjct: 112 SFSHCLLNYKGFLACQAHRVAHRLWTQMRRPLALALQSRIADVF 155
>tr|Q4RFY0|Q4RFY0_TETNG Chromosome undetermined SCAF15109, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00035121001 PE=4 SV=1
Length = 193
Score = 33.9 bits (76), Expect = 6.0
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +2
Query: 278 LHLFDPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLLSAYWHVWSTSS------- 436
LHL P+E+ LPS + G +G H +C +S YW S +S
Sbjct: 17 LHLNTPVEVHRLPSESLQAGESGILNCTVHTG----TCDEEVSVYWFRTSGASEPELIYA 72
Query: 437 HRSNDIHSL-SSRTCFPPSLQIKERTRTSSTY 529
HR+ + H + TCF +L IK T + TY
Sbjct: 73 HRARNDHCKGKNNTCF-YNLSIKNLTSKAGTY 103
>tr|Q2JDI7|Q2JDI7_FRASC Putative uncharacterized protein OS=Frankia
sp. (strain CcI3) GN=Francci3_1277 PE=4 SV=1
Length = 245
Score = 33.9 bits (76), Expect = 6.0
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 203 QVRRAGCLRPEERISQSYTNTTTLMLHLFDPIEIIVLPSGTNPQGS-AGTFGLFNHVQAK 379
QV G +P +R ++ + T L P ++VLP G+N GS GL N
Sbjct: 114 QVITVGGKQPGDRYTEGEASATYLRQRGIPPDRVLVLPEGSNTLGSLTAVAGLMN----- 168
Query: 380 KVSCIFLLSAYWHVWSTSSHRSNDIHSLSSRT 475
S +WH T+ ++ HSL SRT
Sbjct: 169 --------SRHWH---TAVLVTDPWHSLRSRT 189
>tr|Q18A95|Q18A95_CLOD6 Glycine betaine/carnitine/choline ABC
transporter, substrate-binding protein OS=Clostridium
difficile (strain 630) GN=opuCC PE=3 SV=1
Length = 517
Score = 33.9 bits (76), Expect = 6.0
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 272 LMLHLFDPIEIIVLPSGTNPQGSAGTFGLFNHVQAKKVSCIFLLSAYWHVWSTSSHRSND 451
L+ +LF IE+ V P G NP+ N++ K +S + ++S + V+S+S D
Sbjct: 195 LVDYLFSKIEVAVTPKGLNPKAPKK-----NYIALKVISVVLVVSMLFVVFSSSFSSKKD 249
Query: 452 IHSLSSR 472
++ S+
Sbjct: 250 TITIGSK 256
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