DK955806 |
Clone id |
TST39A01NGRL0024_B08 |
Library |
TST39 |
Length |
790 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_B08. 5' end sequence. |
Accession |
DK955806 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1751Contig1 |
Sequence |
AAAGAGGTTCTGCTGGGCTTGCACGAGAGTGCCGCCCACAATGGGCAGGTGCAGGCATGG GAGGCTGACATCAAGGCCTTTGAGACGCTCAAGGCAGACTACGAAGATGAACTTCGCAGA GTCCGCTCCGAGGCCTACCAAGTCGCCACTATGTACGCAGTGTTCCAAGGCGTCATCCTC ACTGCCATCTCCCAGAGAACACTGCTAACCTGCTCACTCTCCTGGAGCCCCGCCTCCATC TCTATCTCCGCCTCCGTCGCCGCATTCCTAGTCATCGCCCACCAACTCAAGAGCATTGGC TAGGTGGAGGAGGACATTAGAACAACCGGCTTGAGCATGTCCGCCCTCCAGGGCTGCCTC GACAAGGTCGACGAAGAAGGCTGTGAGCTCGACCTTGACACTTTTCTTCCTGAGGTGGAG TACCAAAGGTTCGAGTGCGCTGGCTACCGCTTCATCCTGTCCCGCGACGGCCTGTGTGCT TTGCTTTTTCTCGCCATCTTTTCCTTCGTTGTCTCTTGCTTTTCCATCATCACCCTCTGC AAGCATTGCTCTCGCTGTAACTAACAACGTACGCAGGGGGCTGGATCATCATAAGATCAA AATATGACTCCTGTATGCCTGTCACCATTCAACCATCCGTGACCATCATCCTCATCATCA GTCCTCGCATTGTCATCCCAAAGGTGAGAACTTCACCATTTGCTTGCACCTCTCTTCCCC ACCCTTCTCCAAATGAAAATCCCTTTGCTTCCCCTTTTCTGCCCCAAAAAAAAAAAAAAA AAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0C2N8 |
Definition |
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora crassa |
Align length |
37 |
Score (bit) |
34.3 |
E-value |
0.78 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955806|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_B08, 5' (765 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurosp... 34 0.78 sp|Q6GMH0|PRP18_DANRE Pre-mRNA-splicing factor 18 OS=Danio rerio... 34 1.0 sp|Q87S90|SYI_VIBPA Isoleucyl-tRNA synthetase OS=Vibrio parahaem... 33 1.3 sp|Q0HS82|SYI_SHESR Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 1.3 sp|Q0HFY9|SYI_SHESM Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 1.3 sp|A0KZZ1|SYI_SHESA Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 1.3 sp|Q8EBI4|SYI_SHEON Isoleucyl-tRNA synthetase OS=Shewanella onei... 33 1.7 sp|A1RMM6|SYI_SHESW Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 2.3 sp|A4Y4A4|SYI_SHEPC Isoleucyl-tRNA synthetase OS=Shewanella putr... 33 2.3 sp|A1S425|SYI_SHEAM Isoleucyl-tRNA synthetase OS=Shewanella amaz... 33 2.3 sp|Q6LUL1|SYI_PHOPR Isoleucyl-tRNA synthetase OS=Photobacterium ... 33 2.3 sp|Q4IBN1|VTS1_GIBZE Protein VTS1 OS=Gibberella zeae GN=VTS1 PE=... 32 3.0 sp|Q5E7N4|SYI_VIBF1 Isoleucyl-tRNA synthetase OS=Vibrio fischeri... 32 3.0 sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesteras... 31 6.5 sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesteras... 31 6.5 sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4... 31 6.5 sp|Q9KU47|SYI_VIBCH Isoleucyl-tRNA synthetase OS=Vibrio cholerae... 31 6.6 sp|A5F8Z3|SYI_VIBC3 Isoleucyl-tRNA synthetase OS=Vibrio cholerae... 31 6.6 sp|Q7RZQ3|VTS1_NEUCR Protein VTS1 OS=Neurospora crassa GN=vts-1 ... 31 8.6 sp|Q5BGC4|VTS1_EMENI Protein vts1 OS=Emericella nidulans GN=vts1... 31 8.6 sp|Q4WJS2|VTS1_ASPFU Protein vts1 OS=Aspergillus fumigatus GN=vt... 31 8.6
>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1 Length = 829
Score = 34.3 bits (77), Expect = 0.78 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = -1
Query: 534 GDDGKARDNEGKDGEKK--QSTQAVAGQDEAVASALE 430 G DG+ D+EG+DGEKK + A D++VA+A+E Sbjct: 216 GVDGEDEDSEGEDGEKKGEDEDEGDASDDDSVATAVE 252
>sp|Q6GMH0|PRP18_DANRE Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1 Length = 342
Score = 33.9 bits (76), Expect = 1.0 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -1
Query: 519 ARDNEGKDGEKKQSTQA--VAGQDEAVASALEPLVLHLRKKSVKVELTAFFVDLVEAALE 346 A+D ++ K+S Q + + S LEPL LRKK++ ++ D+++ LE Sbjct: 200 AKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKLRKKNLPADIKESITDIIKFMLE 259
Query: 345 GGHAQAGCSNVLLHLANA 292 + +A + + + + NA Sbjct: 260 REYVKANDAYLQMAIGNA 277
>sp|Q87S90|SYI_VIBPA Isoleucyl-tRNA synthetase OS=Vibrio parahaemolyticus GN=ileS PE=3 SV=1 Length = 942
Score = 33.5 bits (75), Expect = 1.3 Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 7/69 (10%) Frame = -1
Query: 474 QAVAGQDEAVASALEPLVLHLRKKSVK---VELTAFFVDLVE----AALEGGHAQAGCSN 316 +A+A Q+E + + E + + ++ ++ +E+ +F++D+++ A +GGHAQ C Sbjct: 696 RALAAQEEIIKAYDEYNIHAVTQRLMQFCSIEMGSFYLDVIKDRQYTAKQGGHAQRSCQT 755
Query: 315 VLLHLANAL 289 L ++ AL Sbjct: 756 ALYYIVEAL 764
>sp|Q0HS82|SYI_SHESR Isoleucyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=ileS PE=3 SV=1 Length = 940
Score = 33.5 bits (75), Expect = 1.3 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = -1
Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325 + + A + + A E H+ + + VEL +F++D+++ A + GHA+ Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSVELGSFYLDIIKDRQYTAKQEGHARRS 750
Query: 324 CSNVLLHLANAL 289 C + L H+A A+ Sbjct: 751 CQSALFHIAEAM 762
>sp|Q0HFY9|SYI_SHESM Isoleucyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=ileS PE=3 SV=1 Length = 940
Score = 33.5 bits (75), Expect = 1.3 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = -1
Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325 + + A + + A E H+ + + VEL +F++D+++ A + GHA+ Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSVELGSFYLDIIKDRQYTAKQEGHARRS 750
Query: 324 CSNVLLHLANAL 289 C + L H+A A+ Sbjct: 751 CQSALFHIAEAM 762
>sp|A0KZZ1|SYI_SHESA Isoleucyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=ileS PE=3 SV=1 Length = 940
Score = 33.5 bits (75), Expect = 1.3 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = -1
Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325 + + A + + A E H+ + + VEL +F++D+++ A + GHA+ Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSVELGSFYLDIIKDRQYTAKQEGHARRS 750
Query: 324 CSNVLLHLANAL 289 C + L H+A A+ Sbjct: 751 CQSALFHIAEAM 762
>sp|Q8EBI4|SYI_SHEON Isoleucyl-tRNA synthetase OS=Shewanella oneidensis GN=ileS PE=3 SV=1 Length = 940
Score = 33.1 bits (74), Expect = 1.7 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = -1
Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325 + + A + + A E H+ + + +EL +F++D+++ A + GHA+ Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSIELGSFYLDIIKDRQYTAKQEGHARRS 750
Query: 324 CSNVLLHLANAL 289 C + L H+A A+ Sbjct: 751 CQSALFHIAEAM 762
>sp|A1RMM6|SYI_SHESW Isoleucyl-tRNA synthetase OS=Shewanella sp. (strain W3-18-1) GN=ileS PE=3 SV=1 Length = 940
Score = 32.7 bits (73), Expect = 2.3 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%) Frame = -1
Query: 393 VELTAFFVDLVE----AALEGGHAQAGCSNVLLHLANAL 289 VEL +F++D+++ A + GHA+ C + L H+A A+ Sbjct: 724 VELGSFYLDIIKDRQYTAKQEGHARRSCQSALFHIAEAM 762
>sp|A4Y4A4|SYI_SHEPC Isoleucyl-tRNA synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ileS PE=3 SV=1 Length = 940
Score = 32.7 bits (73), Expect = 2.3 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%) Frame = -1
Query: 393 VELTAFFVDLVE----AALEGGHAQAGCSNVLLHLANAL 289 VEL +F++D+++ A + GHA+ C + L H+A A+ Sbjct: 724 VELGSFYLDIIKDRQYTAKQEGHARRSCQSALFHIAEAM 762
>sp|A1S425|SYI_SHEAM Isoleucyl-tRNA synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ileS PE=3 SV=1 Length = 940
Score = 32.7 bits (73), Expect = 2.3 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -1
Query: 426 LVLHLRKKSVKVELTAFFVDLVE----AALEGGHAQAGCSNVLLHLANAL 289 LV H + VEL +F++D+++ A HA+ C + L H+A A+ Sbjct: 713 LVTHKLMQFCSVELGSFYLDIIKDRQYTAKRESHARRSCQSALFHIAEAM 762
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SWI8 |
Definition |
tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
70 |
Score (bit) |
46.6 |
E-value |
0.002 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955806|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_B08, 5' (765 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella paten... 47 0.002 tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome ... 46 0.003 tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.016 tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.020 tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.020 tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.027 tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.046 tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.078 tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis... 40 0.17 tr|A9RJ86|A9RJ86_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.30 tr|A9RJ85|A9RJ85_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.30 tr|A9ST72|A9ST72_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.66 tr|A9S4D0|A9S4D0_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.66 tr|B4PFW3|B4PFW3_DROYA GE19634 OS=Drosophila yakuba GN=GE19634 P... 38 0.66 tr|A9TR62|A9TR62_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.1 tr|A9TUX5|A9TUX5_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.5 tr|Q9VW54|Q9VW54_DROME Rpn1 OS=Drosophila melanogaster GN=Rpn1 P... 37 1.5 tr|B3NE05|B3NE05_DROER GG16067 OS=Drosophila erecta GN=GG16067 P... 37 1.9 tr|A9RJ83|A9RJ83_PHYPA Predicted protein OS=Physcomitrella paten... 36 3.3 tr|A7ENV1|A7ENV1_SCLS1 Putative uncharacterized protein OS=Scler... 35 5.6
>tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_234246 PE=4 SV=1 Length = 463
Score = 46.6 bits (109), Expect = 0.002 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = +1
Query: 4 EVLLGLHESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILT 183 ++L + S H ++ WEA + + +++E YQ+ Y+VFQGV+LT Sbjct: 193 KILRWIESSTRHKKALEFWEAQDNLCTRRVDNKRKQSLALKNEVYQLIGFYSVFQGVLLT 252
Query: 184 AISQRTLLTC 213 A+SQ LL C Sbjct: 253 AVSQSNLLHC 262
>tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032577001 PE=4 SV=1 Length = 328
Score = 45.8 bits (107), Expect = 0.003 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = +1
Query: 25 ESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL 204 +SA Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R Sbjct: 22 QSAMDENQIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMS 81
Query: 205 LTC 213 L C Sbjct: 82 LAC 84
>tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172806 PE=4 SV=1 Length = 689
Score = 43.5 bits (101), Expect = 0.016 Identities = 21/52 (40%), Positives = 28/52 (53%) Frame = +1
Query: 58 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213 WE + + E VR+E YQV Y VFQGVI TA++Q ++L C Sbjct: 149 WEESFGLHQKRREYKESRRDAVRNEIYQVIGFYVVFQGVIFTAVAQASMLRC 200
>tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233790 PE=4 SV=1 Length = 220
Score = 43.1 bits (100), Expect = 0.020 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +1
Query: 58 WEADIKAFETLKADYEDELRRVRS-----EAYQVATMYAVFQGVILTAISQRTLLTC 213 WE + K KA Y E++R RS E YQ+ Y+VFQGV+L A++Q + LTC Sbjct: 36 WENNFK-----KALYRVEVKRERSLNVKNEVYQLIGFYSVFQGVVLGAVAQASTLTC 87
>tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163566 PE=4 SV=1 Length = 233
Score = 43.1 bits (100), Expect = 0.020 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +1
Query: 7 VLLGLHESAAHNGQVQAWEADIKAFETLKADYE-DELRRVRSEAYQVATMYAVFQGVILT 183 +L + S H +Q WE A T + D + + ++E YQ+ Y+VFQGV+LT Sbjct: 38 ILHWIENSERHKKALQFWETQ-DALCTRRVDSKRKQSAAAKNEVYQLIGFYSVFQGVLLT 96
Query: 184 AISQRTLLTC 213 A++Q +L C Sbjct: 97 AVAQSNMLHC 106
>tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032202 PE=4 SV=1 Length = 216
Score = 42.7 bits (99), Expect = 0.027 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = +1
Query: 46 QVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213 Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R L C Sbjct: 5 QIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMSLAC 60
>tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_89523 PE=4 SV=1 Length = 257
Score = 42.0 bits (97), Expect = 0.046 Identities = 18/55 (32%), Positives = 34/55 (61%) Frame = +1
Query: 49 VQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213 +Q WE+ ++ + + + V++E Y + ++VFQGV+LT +SQ +LL+C Sbjct: 81 LQEWESKLRDSQDIILRKQTLSLNVKNEIYHLIGFFSVFQGVVLTTVSQASLLSC 135
>tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172807 PE=4 SV=1 Length = 629
Score = 41.2 bits (95), Expect = 0.078 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +1
Query: 58 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213 WE E + E + + +E YQV Y VFQGVI TA++Q ++L C Sbjct: 147 WEETFNLCEKRRKYKEAQRDAIWNEIYQVIGFYVVFQGVIFTAVAQASMLRC 198
>tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025154 PE=4 SV=1 Length = 198
Score = 40.0 bits (92), Expect = 0.17 Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Frame = +1
Query: 70 IKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL---LTC 213 ++ ++ E+ ++ ++SEA+++A Y +FQGVILTA+S+ ++ +TC Sbjct: 10 VEEMRSIVEKQEERIQNLQSEAFELANFYFLFQGVILTAVSRASISHPITC 60
>tr|A9RJ86|A9RJ86_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_66854 PE=4 SV=1 Length = 407
Score = 39.3 bits (90), Expect = 0.30 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = +1
Query: 22 HESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRT 201 H+S ++ W+ F + ++ ++E YQ+ Y+VFQGV+ TA++Q T Sbjct: 34 HQSCCKEA-LEVWQEKEALFTSRNDRRRKQISYCQTEIYQLVGFYSVFQGVLFTAVAQST 92
Query: 202 LLTC 213 L C Sbjct: 93 NLKC 96
|