DK955806
Clone id TST39A01NGRL0024_B08
Library
Length 790
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_B08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AAAGAGGTTCTGCTGGGCTTGCACGAGAGTGCCGCCCACAATGGGCAGGTGCAGGCATGG
GAGGCTGACATCAAGGCCTTTGAGACGCTCAAGGCAGACTACGAAGATGAACTTCGCAGA
GTCCGCTCCGAGGCCTACCAAGTCGCCACTATGTACGCAGTGTTCCAAGGCGTCATCCTC
ACTGCCATCTCCCAGAGAACACTGCTAACCTGCTCACTCTCCTGGAGCCCCGCCTCCATC
TCTATCTCCGCCTCCGTCGCCGCATTCCTAGTCATCGCCCACCAACTCAAGAGCATTGGC
TAGGTGGAGGAGGACATTAGAACAACCGGCTTGAGCATGTCCGCCCTCCAGGGCTGCCTC
GACAAGGTCGACGAAGAAGGCTGTGAGCTCGACCTTGACACTTTTCTTCCTGAGGTGGAG
TACCAAAGGTTCGAGTGCGCTGGCTACCGCTTCATCCTGTCCCGCGACGGCCTGTGTGCT
TTGCTTTTTCTCGCCATCTTTTCCTTCGTTGTCTCTTGCTTTTCCATCATCACCCTCTGC
AAGCATTGCTCTCGCTGTAACTAACAACGTACGCAGGGGGCTGGATCATCATAAGATCAA
AATATGACTCCTGTATGCCTGTCACCATTCAACCATCCGTGACCATCATCCTCATCATCA
GTCCTCGCATTGTCATCCCAAAGGTGAGAACTTCACCATTTGCTTGCACCTCTCTTCCCC
ACCCTTCTCCAAATGAAAATCCCTTTGCTTCCCCTTTTCTGCCCCAAAAAAAAAAAAAAA
AAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P0C2N8
Definition sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora crassa
Align length 37
Score (bit) 34.3
E-value 0.78
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955806|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_B08, 5'
(765 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurosp... 34 0.78
sp|Q6GMH0|PRP18_DANRE Pre-mRNA-splicing factor 18 OS=Danio rerio... 34 1.0
sp|Q87S90|SYI_VIBPA Isoleucyl-tRNA synthetase OS=Vibrio parahaem... 33 1.3
sp|Q0HS82|SYI_SHESR Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 1.3
sp|Q0HFY9|SYI_SHESM Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 1.3
sp|A0KZZ1|SYI_SHESA Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 1.3
sp|Q8EBI4|SYI_SHEON Isoleucyl-tRNA synthetase OS=Shewanella onei... 33 1.7
sp|A1RMM6|SYI_SHESW Isoleucyl-tRNA synthetase OS=Shewanella sp. ... 33 2.3
sp|A4Y4A4|SYI_SHEPC Isoleucyl-tRNA synthetase OS=Shewanella putr... 33 2.3
sp|A1S425|SYI_SHEAM Isoleucyl-tRNA synthetase OS=Shewanella amaz... 33 2.3
sp|Q6LUL1|SYI_PHOPR Isoleucyl-tRNA synthetase OS=Photobacterium ... 33 2.3
sp|Q4IBN1|VTS1_GIBZE Protein VTS1 OS=Gibberella zeae GN=VTS1 PE=... 32 3.0
sp|Q5E7N4|SYI_VIBF1 Isoleucyl-tRNA synthetase OS=Vibrio fischeri... 32 3.0
sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesteras... 31 6.5
sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesteras... 31 6.5
sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4... 31 6.5
sp|Q9KU47|SYI_VIBCH Isoleucyl-tRNA synthetase OS=Vibrio cholerae... 31 6.6
sp|A5F8Z3|SYI_VIBC3 Isoleucyl-tRNA synthetase OS=Vibrio cholerae... 31 6.6
sp|Q7RZQ3|VTS1_NEUCR Protein VTS1 OS=Neurospora crassa GN=vts-1 ... 31 8.6
sp|Q5BGC4|VTS1_EMENI Protein vts1 OS=Emericella nidulans GN=vts1... 31 8.6
sp|Q4WJS2|VTS1_ASPFU Protein vts1 OS=Aspergillus fumigatus GN=vt... 31 8.6

>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora
crassa GN=drs-1 PE=3 SV=1
Length = 829

Score = 34.3 bits (77), Expect = 0.78
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -1

Query: 534 GDDGKARDNEGKDGEKK--QSTQAVAGQDEAVASALE 430
G DG+ D+EG+DGEKK + A D++VA+A+E
Sbjct: 216 GVDGEDEDSEGEDGEKKGEDEDEGDASDDDSVATAVE 252


>sp|Q6GMH0|PRP18_DANRE Pre-mRNA-splicing factor 18 OS=Danio rerio
GN=prpf18 PE=2 SV=1
Length = 342

Score = 33.9 bits (76), Expect = 1.0
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -1

Query: 519 ARDNEGKDGEKKQSTQA--VAGQDEAVASALEPLVLHLRKKSVKVELTAFFVDLVEAALE 346
A+D ++ K+S Q + + S LEPL LRKK++ ++ D+++ LE
Sbjct: 200 AKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKLRKKNLPADIKESITDIIKFMLE 259

Query: 345 GGHAQAGCSNVLLHLANA 292
+ +A + + + + NA
Sbjct: 260 REYVKANDAYLQMAIGNA 277


>sp|Q87S90|SYI_VIBPA Isoleucyl-tRNA synthetase OS=Vibrio
parahaemolyticus GN=ileS PE=3 SV=1
Length = 942

Score = 33.5 bits (75), Expect = 1.3
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Frame = -1

Query: 474 QAVAGQDEAVASALEPLVLHLRKKSVK---VELTAFFVDLVE----AALEGGHAQAGCSN 316
+A+A Q+E + + E + + ++ ++ +E+ +F++D+++ A +GGHAQ C
Sbjct: 696 RALAAQEEIIKAYDEYNIHAVTQRLMQFCSIEMGSFYLDVIKDRQYTAKQGGHAQRSCQT 755

Query: 315 VLLHLANAL 289
L ++ AL
Sbjct: 756 ALYYIVEAL 764


>sp|Q0HS82|SYI_SHESR Isoleucyl-tRNA synthetase OS=Shewanella sp.
(strain MR-7) GN=ileS PE=3 SV=1
Length = 940

Score = 33.5 bits (75), Expect = 1.3
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = -1

Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325
+ + A + + A E H+ + + VEL +F++D+++ A + GHA+
Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSVELGSFYLDIIKDRQYTAKQEGHARRS 750

Query: 324 CSNVLLHLANAL 289
C + L H+A A+
Sbjct: 751 CQSALFHIAEAM 762


>sp|Q0HFY9|SYI_SHESM Isoleucyl-tRNA synthetase OS=Shewanella sp.
(strain MR-4) GN=ileS PE=3 SV=1
Length = 940

Score = 33.5 bits (75), Expect = 1.3
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = -1

Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325
+ + A + + A E H+ + + VEL +F++D+++ A + GHA+
Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSVELGSFYLDIIKDRQYTAKQEGHARRS 750

Query: 324 CSNVLLHLANAL 289
C + L H+A A+
Sbjct: 751 CQSALFHIAEAM 762


>sp|A0KZZ1|SYI_SHESA Isoleucyl-tRNA synthetase OS=Shewanella sp.
(strain ANA-3) GN=ileS PE=3 SV=1
Length = 940

Score = 33.5 bits (75), Expect = 1.3
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = -1

Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325
+ + A + + A E H+ + + VEL +F++D+++ A + GHA+
Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSVELGSFYLDIIKDRQYTAKQEGHARRS 750

Query: 324 CSNVLLHLANAL 289
C + L H+A A+
Sbjct: 751 CQSALFHIAEAM 762


>sp|Q8EBI4|SYI_SHEON Isoleucyl-tRNA synthetase OS=Shewanella
oneidensis GN=ileS PE=3 SV=1
Length = 940

Score = 33.1 bits (74), Expect = 1.7
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = -1

Query: 480 STQAVAGQDEAVASALEPLVLHLRKKSV----KVELTAFFVDLVE----AALEGGHAQAG 325
+ + A + + A E H+ + + +EL +F++D+++ A + GHA+
Sbjct: 691 AVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSIELGSFYLDIIKDRQYTAKQEGHARRS 750

Query: 324 CSNVLLHLANAL 289
C + L H+A A+
Sbjct: 751 CQSALFHIAEAM 762


>sp|A1RMM6|SYI_SHESW Isoleucyl-tRNA synthetase OS=Shewanella sp.
(strain W3-18-1) GN=ileS PE=3 SV=1
Length = 940

Score = 32.7 bits (73), Expect = 2.3
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -1

Query: 393 VELTAFFVDLVE----AALEGGHAQAGCSNVLLHLANAL 289
VEL +F++D+++ A + GHA+ C + L H+A A+
Sbjct: 724 VELGSFYLDIIKDRQYTAKQEGHARRSCQSALFHIAEAM 762


>sp|A4Y4A4|SYI_SHEPC Isoleucyl-tRNA synthetase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ileS PE=3
SV=1
Length = 940

Score = 32.7 bits (73), Expect = 2.3
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -1

Query: 393 VELTAFFVDLVE----AALEGGHAQAGCSNVLLHLANAL 289
VEL +F++D+++ A + GHA+ C + L H+A A+
Sbjct: 724 VELGSFYLDIIKDRQYTAKQEGHARRSCQSALFHIAEAM 762


>sp|A1S425|SYI_SHEAM Isoleucyl-tRNA synthetase OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ileS PE=3
SV=1
Length = 940

Score = 32.7 bits (73), Expect = 2.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1

Query: 426 LVLHLRKKSVKVELTAFFVDLVE----AALEGGHAQAGCSNVLLHLANAL 289
LV H + VEL +F++D+++ A HA+ C + L H+A A+
Sbjct: 713 LVTHKLMQFCSVELGSFYLDIIKDRQYTAKRESHARRSCQSALFHIAEAM 762


tr_hit_id A9SWI8
Definition tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 70
Score (bit) 46.6
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955806|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_B08, 5'
(765 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella paten... 47 0.002
tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome ... 46 0.003
tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.016
tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.020
tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.020
tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.027
tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.046
tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.078
tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis... 40 0.17
tr|A9RJ86|A9RJ86_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.30
tr|A9RJ85|A9RJ85_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.30
tr|A9ST72|A9ST72_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.66
tr|A9S4D0|A9S4D0_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.66
tr|B4PFW3|B4PFW3_DROYA GE19634 OS=Drosophila yakuba GN=GE19634 P... 38 0.66
tr|A9TR62|A9TR62_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.1
tr|A9TUX5|A9TUX5_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.5
tr|Q9VW54|Q9VW54_DROME Rpn1 OS=Drosophila melanogaster GN=Rpn1 P... 37 1.5
tr|B3NE05|B3NE05_DROER GG16067 OS=Drosophila erecta GN=GG16067 P... 37 1.9
tr|A9RJ83|A9RJ83_PHYPA Predicted protein OS=Physcomitrella paten... 36 3.3
tr|A7ENV1|A7ENV1_SCLS1 Putative uncharacterized protein OS=Scler... 35 5.6

>tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_234246 PE=4 SV=1
Length = 463

Score = 46.6 bits (109), Expect = 0.002
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +1

Query: 4 EVLLGLHESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILT 183
++L + S H ++ WEA + + +++E YQ+ Y+VFQGV+LT
Sbjct: 193 KILRWIESSTRHKKALEFWEAQDNLCTRRVDNKRKQSLALKNEVYQLIGFYSVFQGVLLT 252

Query: 184 AISQRTLLTC 213
A+SQ LL C
Sbjct: 253 AVSQSNLLHC 262


>tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032577001
PE=4 SV=1
Length = 328

Score = 45.8 bits (107), Expect = 0.003
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1

Query: 25 ESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL 204
+SA Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R
Sbjct: 22 QSAMDENQIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMS 81

Query: 205 LTC 213
L C
Sbjct: 82 LAC 84


>tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172806 PE=4 SV=1
Length = 689

Score = 43.5 bits (101), Expect = 0.016
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1

Query: 58 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213
WE + + E VR+E YQV Y VFQGVI TA++Q ++L C
Sbjct: 149 WEESFGLHQKRREYKESRRDAVRNEIYQVIGFYVVFQGVIFTAVAQASMLRC 200


>tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_233790 PE=4 SV=1
Length = 220

Score = 43.1 bits (100), Expect = 0.020
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +1

Query: 58 WEADIKAFETLKADYEDELRRVRS-----EAYQVATMYAVFQGVILTAISQRTLLTC 213
WE + K KA Y E++R RS E YQ+ Y+VFQGV+L A++Q + LTC
Sbjct: 36 WENNFK-----KALYRVEVKRERSLNVKNEVYQLIGFYSVFQGVVLGAVAQASTLTC 87


>tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163566 PE=4 SV=1
Length = 233

Score = 43.1 bits (100), Expect = 0.020
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1

Query: 7 VLLGLHESAAHNGQVQAWEADIKAFETLKADYE-DELRRVRSEAYQVATMYAVFQGVILT 183
+L + S H +Q WE A T + D + + ++E YQ+ Y+VFQGV+LT
Sbjct: 38 ILHWIENSERHKKALQFWETQ-DALCTRRVDSKRKQSAAAKNEVYQLIGFYSVFQGVLLT 96

Query: 184 AISQRTLLTC 213
A++Q +L C
Sbjct: 97 AVAQSNMLHC 106


>tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_032202 PE=4 SV=1
Length = 216

Score = 42.7 bits (99), Expect = 0.027
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1

Query: 46 QVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213
Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R L C
Sbjct: 5 QIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMSLAC 60


>tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_89523 PE=4 SV=1
Length = 257

Score = 42.0 bits (97), Expect = 0.046
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +1

Query: 49 VQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213
+Q WE+ ++ + + + V++E Y + ++VFQGV+LT +SQ +LL+C
Sbjct: 81 LQEWESKLRDSQDIILRKQTLSLNVKNEIYHLIGFFSVFQGVVLTTVSQASLLSC 135


>tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172807 PE=4 SV=1
Length = 629

Score = 41.2 bits (95), Expect = 0.078
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1

Query: 58 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 213
WE E + E + + +E YQV Y VFQGVI TA++Q ++L C
Sbjct: 147 WEETFNLCEKRRKYKEAQRDAIWNEIYQVIGFYVVFQGVIFTAVAQASMLRC 198


>tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025154 PE=4 SV=1
Length = 198

Score = 40.0 bits (92), Expect = 0.17
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1

Query: 70 IKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL---LTC 213
++ ++ E+ ++ ++SEA+++A Y +FQGVILTA+S+ ++ +TC
Sbjct: 10 VEEMRSIVEKQEERIQNLQSEAFELANFYFLFQGVILTAVSRASISHPITC 60


>tr|A9RJ86|A9RJ86_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66854 PE=4 SV=1
Length = 407

Score = 39.3 bits (90), Expect = 0.30
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1

Query: 22 HESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRT 201
H+S ++ W+ F + ++ ++E YQ+ Y+VFQGV+ TA++Q T
Sbjct: 34 HQSCCKEA-LEVWQEKEALFTSRNDRRRKQISYCQTEIYQLVGFYSVFQGVLFTAVAQST 92

Query: 202 LLTC 213
L C
Sbjct: 93 NLKC 96