DK955812 |
Clone id |
TST39A01NGRL0024_B14 |
Library |
TST39 |
Length |
627 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_B14. 5' end sequence. |
Accession |
DK955812 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TGGACTTCCGTGTGGTTTAACCACACAGAGAGAGCTGAGGTAGAAGCATCGTCTCCGAAC AGCTCACGGGGTGGAAGGAGCAGTTCTGCTGACGCTGTCGGCTCTATTGAGGGATTATTA CATTGAGAGGGGAGCTATGGCCTGGATTGCGGCAGCGCGCGGAGATGCTACCACCCCAGC AGGGCCAGTGGCAGCACCTCTACCCCGCTTGCAGCTCGACTCTTTGAGGTCCTGCGAGGA TAGCAGCAACCACATTGCCGTTGCTGTCATCGACGCCAATGCACTTATATCATTCGACTC GTCTGCACGCCTTCTTGCCCTTGCCTGCTCCTCATCGTCTTCGCAAAGCACTCGCTTTGT CACTGTCAAGGAGGTTCTTGAAGAGGTTCGCGCGCCTGCGTCCCGCTTTCATCTCGATGT CCTTCCATGTTCACTTGACTGTATAGATCCATCTGATGATGCCCTGCAGAAAGTCATAAA ATTCGCTCGAGCAACAGGAGATTTGGCTTCCCTCTCTGATGCTGATCTTAAGTTACTGGC TTTAACATATACGTTAGAGGAGCAGACTTATGGCTCAACCCATTTGCGAACACAACCACC CCCAGTGCATGTGGCACGAGTTAGGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6VEU1 |
Definition |
sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus |
Align length |
85 |
Score (bit) |
48.5 |
E-value |
3.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FLL1 |
Definition |
tr|Q9FLL1|Q9FLL1_ARATH Genomic DNA, chromosome 5, P1 clone:MEE6 OS=Arabidopsis thaliana |
Align length |
147 |
Score (bit) |
94.7 |
E-value |
4.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955812|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_B14, 5' (627 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9FLL1|Q9FLL1_ARATH Genomic DNA, chromosome 5, P1 clone:MEE6 ... 95 4e-18 tr|Q681U9|Q681U9_ARATH Putative uncharacterized protein At5g4119... 95 4e-18 tr|A9SGD2|A9SGD2_PHYPA Predicted protein OS=Physcomitrella paten... 92 3e-17 tr|A7QIU0|A7QIU0_VITVI Chromosome chr2 scaffold_105, whole genom... 90 1e-16 tr|A5C6C5|A5C6C5_VITVI Putative uncharacterized protein OS=Vitis... 88 5e-16 tr|B6THD0|B6THD0_MAIZE Putative uncharacterized protein OS=Zea m... 86 1e-15 tr|Q6Z7B7|Q6Z7B7_ORYSJ Os02g0114700 protein OS=Oryza sativa subs... 86 2e-15 tr|A3A2E7|A3A2E7_ORYSJ Putative uncharacterized protein OS=Oryza... 86 2e-15 tr|B6THX3|B6THX3_MAIZE Putative uncharacterized protein OS=Zea m... 84 5e-15 tr|A2X031|A2X031_ORYSI Putative uncharacterized protein OS=Oryza... 84 7e-15 tr|Q5BJ63|Q5BJ63_XENTR Nob1p-prov protein (Fragment) OS=Xenopus ... 54 8e-06 tr|Q28DH7|Q28DH7_XENTR Novel protein OS=Xenopus tropicalis GN=no... 54 8e-06 tr|Q6VEU0|Q6VEU0_XENLA Nin one binding protein OS=Xenopus laevis... 52 3e-05 tr|Q5XHI8|Q5XHI8_XENLA LOC398701 protein OS=Xenopus laevis GN=LO... 52 3e-05 tr|Q0IFE9|Q0IFE9_AEDAE Putative uncharacterized protein OS=Aedes... 51 6e-05 tr|Q0IFE8|Q0IFE8_AEDAE Putative uncharacterized protein OS=Aedes... 51 6e-05 tr|B4M2R9|B4M2R9_DROVI GJ18597 OS=Drosophila virilis GN=GJ18597 ... 50 1e-04 tr|B4L8C8|B4L8C8_DROMO GI10936 OS=Drosophila mojavensis GN=GI109... 50 1e-04 tr|B3M9A1|B3M9A1_DROAN GF10341 OS=Drosophila ananassae GN=GF1034... 50 1e-04 tr|Q6PHG7|Q6PHG7_DANRE Wu:fc27e05 protein (Fragment) OS=Danio re... 48 4e-04 tr|Q4TC07|Q4TC07_TETNG Chromosome undetermined SCAF7064, whole g... 48 4e-04 tr|B2RAR2|B2RAR2_HUMAN cDNA, FLJ95064, highly similar to Homo sa... 48 4e-04 tr|B4JJQ4|B4JJQ4_DROGR GH12205 OS=Drosophila grimshawi GN=GH1220... 48 5e-04 tr|Q8BW77|Q8BW77_MOUSE Putative uncharacterized protein OS=Mus m... 47 0.001 tr|Q148S3|Q148S3_MOUSE NIN1/RPN12 binding protein 1 homolog (S. ... 47 0.001 tr|B7FP62|B7FP62_PHATR Predicted protein OS=Phaeodactylum tricor... 47 0.001 tr|Q7PSM3|Q7PSM3_ANOGA AGAP004064-PA (Fragment) OS=Anopheles gam... 47 0.001 tr|B3NW65|B3NW65_DROER GG18342 OS=Drosophila erecta GN=GG18342 P... 46 0.002 tr|Q54W91|Q54W91_DICDI Putative uncharacterized protein OS=Dicty... 45 0.004 tr|Q9W2Y4|Q9W2Y4_DROME CG2972 OS=Drosophila melanogaster GN=CG29... 45 0.005
>tr|Q9FLL1|Q9FLL1_ARATH Genomic DNA, chromosome 5, P1 clone:MEE6 OS=Arabidopsis thaliana GN=At5g41190 PE=4 SV=1 Length = 602
Score = 94.7 bits (234), Expect = 4e-18 Identities = 57/147 (38%), Positives = 79/147 (53%) Frame = +2
Query: 185 PVAAPLPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXXXXXXXXXXXXXXXXTRFVT 364 PV P L + +C+ S+ I++AV+DANA+I +FVT Sbjct: 22 PVNDGAPAAILGMVGNCK-STKGISIAVVDANAIIE----------GRQSLTNFADKFVT 70
Query: 365 VKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFARATGXXXXXXXXXXXXXXX 544 V EVL E+R PASR L +P ++D ++PS ++L KVIKFARATG Sbjct: 71 VPEVLSEIRDPASRRRLAFIPFTIDTMEPSPESLSKVIKFARATGDLQSLSDVDLKLIAL 130
Query: 545 TYTLEEQTYGSTHLRTQPPPVHVARVR 625 +YTLE Q YG+ +LR PPP+ RV+ Sbjct: 131 SYTLEAQVYGTKNLRDVPPPIQTVRVK 157
>tr|Q681U9|Q681U9_ARATH Putative uncharacterized protein At5g41190 OS=Arabidopsis thaliana GN=At5g41190 PE=2 SV=1 Length = 602
Score = 94.7 bits (234), Expect = 4e-18 Identities = 57/147 (38%), Positives = 79/147 (53%) Frame = +2
Query: 185 PVAAPLPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXXXXXXXXXXXXXXXXTRFVT 364 PV P L + +C+ S+ I++AV+DANA+I +FVT Sbjct: 22 PVNDGAPAAILGMVGNCK-STKGISIAVVDANAIIE----------GRQSLTNFADKFVT 70
Query: 365 VKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFARATGXXXXXXXXXXXXXXX 544 V EVL E+R PASR L +P ++D ++PS ++L KVIKFARATG Sbjct: 71 VPEVLSEIRDPASRRRLAFIPFTIDTMEPSPESLSKVIKFARATGDLQSLSDVDLKLIAL 130
Query: 545 TYTLEEQTYGSTHLRTQPPPVHVARVR 625 +YTLE Q YG+ +LR PPP+ RV+ Sbjct: 131 SYTLEAQVYGTKNLRDVPPPIQTVRVK 157
>tr|A9SGD2|A9SGD2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233290 PE=4 SV=1 Length = 571
Score = 92.0 bits (227), Expect = 3e-17 Identities = 59/163 (36%), Positives = 79/163 (48%) Frame = +2
Query: 134 AMAWIAAARGDATTPAGPVAAPLPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXXXX 313 A AW A AR DA P P S C+ N + V+D NA+I Sbjct: 11 AGAWSAIARKDAVVPVKAKVEP-------SAVRCKSGLNTV---VVDTNAVIG------- 53
Query: 314 XXXXXXXXXXXXTRFVTVKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFARA 493 RFVT++EVL+EVR P SR +L LP L+ ++P +A+ KV++FA+A Sbjct: 54 ---SGMHLVGIAERFVTMREVLKEVRDPMSRMNLAALPIKLEIMEPDPEAVTKVVRFAKA 110
Query: 494 TGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLRTQPPPVHVARV 622 TG YTLE Q +G +HLRT+PPP+ V V Sbjct: 111 TGDLQSLSEVDTKLIALAYTLESQIHGVSHLRTRPPPLQVTPV 153
>tr|A7QIU0|A7QIU0_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000393001 PE=4 SV=1 Length = 611
Score = 89.7 bits (221), Expect = 1e-16 Identities = 51/132 (38%), Positives = 72/132 (54%) Frame = +2
Query: 230 SCEDSSNHIAVAVIDANALISFDXXXXXXXXXXXXXXXXXTRFVTVKEVLEEVRAPASRF 409 SC+ SS I++AV+DA A+I +FV+V EV++EVR P SR Sbjct: 39 SCK-SSKGISIAVVDATAIIQ----------GGEQLTRCADKFVSVSEVIDEVRDPVSRH 87
Query: 410 HLDVLPCSLDCIDPSDDALQKVIKFARATGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLR 589 L +P ++D ++PS ++L+KVI FARATG TY LE Q +G+ HLR Sbjct: 88 KLAFVPFTIDTMEPSPESLKKVINFARATGDLQTLSDVDLKLIALTYMLEAQIHGTKHLR 147
Query: 590 TQPPPVHVARVR 625 PPP+H V+ Sbjct: 148 DSPPPIHAVNVK 159
>tr|A5C6C5|A5C6C5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020978 PE=4 SV=1 Length = 621
Score = 87.8 bits (216), Expect = 5e-16 Identities = 50/132 (37%), Positives = 71/132 (53%) Frame = +2
Query: 230 SCEDSSNHIAVAVIDANALISFDXXXXXXXXXXXXXXXXXTRFVTVKEVLEEVRAPASRF 409 SC+ SS I++AV+DA A+I +FV+V EV++EVR P S Sbjct: 39 SCK-SSKGISIAVVDATAIIQ----------GGEQLTRCADKFVSVSEVIDEVRDPVSXH 87
Query: 410 HLDVLPCSLDCIDPSDDALQKVIKFARATGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLR 589 L +P ++D ++PS ++L+KVI FARATG TY LE Q +G+ HLR Sbjct: 88 KLAFVPFTIDTMEPSPESLKKVINFARATGDLQTLSDVDLKLIALTYMLESQIHGTKHLR 147
Query: 590 TQPPPVHVARVR 625 PPP+H V+ Sbjct: 148 DSPPPIHAVNVK 159
>tr|B6THD0|B6THD0_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 570
Score = 86.3 bits (212), Expect = 1e-15 Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 1/165 (0%) Frame = +2
Query: 134 AMAWIAAARGDATTPAGPVAAP-LPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXXX 310 A+AW AAA AA + R+ + SC +SS +AVAV+DANA+IS Sbjct: 17 ALAWGAAATAQRKAVEQESAAQAVSRI----VASCANSSG-VAVAVVDANAVIS------ 65
Query: 311 XXXXXXXXXXXXXTRFVTVKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFAR 490 R VTV EVLEEVR +R L +LP ++ ++P+ + ++KV KFAR Sbjct: 66 ----GGSALSTSAGRLVTVPEVLEEVRDATARRRLGLLPVPVETVEPAPEFVKKVTKFAR 121
Query: 491 ATGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLRTQPPPVHVARVR 625 TG Y LE + +G++HLR PPP+H VR Sbjct: 122 ETGDIQTLSDVDIKIIALAYMLEAEIHGTSHLREHPPPLHEVNVR 166
>tr|Q6Z7B7|Q6Z7B7_ORYSJ Os02g0114700 protein OS=Oryza sativa subsp. japonica GN=P0036E06.18 PE=4 SV=1 Length = 576
Score = 85.5 bits (210), Expect = 2e-15 Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = +2
Query: 131 GAMAWIAAARGDATTPAGPVAA-PLPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXX 307 G AW AAA A +A + RL + SC ++S +AVAV+DANA+IS Sbjct: 23 GGGAWGAAAVAQRKEVAEESSAHAVSRL----VASCANTSG-VAVAVVDANAVIS----- 72
Query: 308 XXXXXXXXXXXXXXTRFVTVKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFA 487 R VTV EVLEEVR ++R L +L ++ +DP+ + ++KV+KFA Sbjct: 73 -----GGAALSSSAARLVTVPEVLEEVRDASARRRLALLMAPVETLDPAPEFVKKVVKFA 127
Query: 488 RATGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLRTQPPPVHVARVR 625 R TG Y LE + +G+ HLR QPPP+ V VR Sbjct: 128 RETGDLQTLSDVDIKIIALAYMLEAEIHGTNHLREQPPPLRVVNVR 173
>tr|A3A2E7|A3A2E7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_004969 PE=4 SV=1 Length = 595
Score = 85.5 bits (210), Expect = 2e-15 Identities = 58/160 (36%), Positives = 81/160 (50%) Frame = +2
Query: 146 IAAARGDATTPAGPVAAPLPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXXXXXXXX 325 +AAAR A + RL + SC ++S +AVAV+DANA+IS Sbjct: 48 LAAARAAREVAEESSAHAVSRL----VASCANTSG-VAVAVVDANAVIS----------G 92
Query: 326 XXXXXXXXTRFVTVKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFARATGXX 505 R VTV EVLEEVR ++R L +L ++ +DP+ + ++KV+KFAR TG Sbjct: 93 GAALSSSAARLVTVPEVLEEVRDASARRRLALLMAPVETLDPAPEFVKKVVKFARETGDL 152
Query: 506 XXXXXXXXXXXXXTYTLEEQTYGSTHLRTQPPPVHVARVR 625 Y LE + +G+ HLR QPPP+ V VR Sbjct: 153 QTLSDVDIKIIALAYMLEAEIHGTNHLREQPPPLRVVNVR 192
>tr|B6THX3|B6THX3_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 560
Score = 84.3 bits (207), Expect = 5e-15 Identities = 53/132 (40%), Positives = 70/132 (53%) Frame = +2
Query: 230 SCEDSSNHIAVAVIDANALISFDXXXXXXXXXXXXXXXXXTRFVTVKEVLEEVRAPASRF 409 SC +SS +AVAV+DANA+IS R VTV EVLEEVR A+R Sbjct: 38 SCANSSG-VAVAVVDANAVIS----------GAPALSTSAGRLVTVPEVLEEVRDAAARR 86
Query: 410 HLDVLPCSLDCIDPSDDALQKVIKFARATGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLR 589 L +LP ++ +DP+ + ++KV KFAR TG Y LE + +GS+HLR Sbjct: 87 RLGLLPIPVETVDPAPEFVKKVTKFARETGDIQTLSDVDIKIIALAYMLEAEIHGSSHLR 146
Query: 590 TQPPPVHVARVR 625 PPP+ VR Sbjct: 147 EHPPPLLEVNVR 158
>tr|A2X031|A2X031_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05569 PE=4 SV=1 Length = 576
Score = 84.0 bits (206), Expect = 7e-15 Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = +2
Query: 131 GAMAWIAAARGDATTPAGPVAA-PLPRLQLDSLRSCEDSSNHIAVAVIDANALISFDXXX 307 G AW AAA A +A + RL + SC ++S +AVAV+DANA+IS Sbjct: 23 GGGAWGAAAVAQRKEVAEESSAHAVSRL----VASCANTSG-VAVAVVDANAVIS----- 72
Query: 308 XXXXXXXXXXXXXXTRFVTVKEVLEEVRAPASRFHLDVLPCSLDCIDPSDDALQKVIKFA 487 R VTV EVLEEVR ++R L +L ++ +DP+ + ++KV+KFA Sbjct: 73 -----GGAALSSSAARLVTVPEVLEEVRDASARRRLALLMAPVETLDPAPEFVKKVVKFA 127
Query: 488 RATGXXXXXXXXXXXXXXXTYTLEEQTYGSTHLRTQPPPVHVARVR 625 + TG Y LE + +G+ HLR QPPP+ V VR Sbjct: 128 QETGDLQTLSDVDIKIIALAYMLEAEIHGTNHLREQPPPLRVVNVR 173
|