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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955828
Clone id TST39A01NGRL0024_C06
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_C06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGCTCGCTTGTTGCTCTCTCGTAGACGATGGCCATAGCGGCATCGAAGGCAAGCTCTGC
CTTGAAGGGCACTAGGTTCCTGAGATCCTCACTGCGACAAATCTGTTGCAGGGAATGGAG
TGCCTCACCTTTAATGGCGAAGACAAAGGAAGCGGGGGAAGGCATCTCCTCTATGACACC
TTCCTCTCACTCGCTAAAGTCTCCCGCTATCGCTAACTTCTACAGAAGCTATCGTCGGGA
GCCTATCCCCAATATTTCAGAGCTGGATTTGGAGGAGGAAGTCAGTCGAATTGACATGGA
CCCTAAGAAGATGATGCAGGAAGGGGATCCATTGGCCATTAAAGCTGTTATCAAGGATGT
TATGCCTGTAGGGTACTTCGTCAGCTTGCCCTCAGGCAGAGATGGCTACCTTCCCGCAGA
TGACCTTGGATTTACAGGGGGGCTTGCAATTCTACAGCGGTTGTTCAAAGAAGGTCAAGA
GATATATGTGCGAATTGTGTGTCGTGGAGGGGCGGGCCGTGAGATTGTCTCCATCAAAAA
GCCCGAGTTTGCTCCTCCTAGTGAACAGAAAGACTATTGAGAGCTTGC
■■Homology search results ■■ -
sp_hit_id Q9JZ44
Definition sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
Align length 49
Score (bit) 35.8
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955828|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_C06, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening...    36   0.16 
sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase OS...    34   0.47 
sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase OS...    34   0.47 
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03...    34   0.62 
sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase OS...    34   0.62 
sp|O09131|GSTO1_MOUSE Glutathione S-transferase omega-1 OS=Mus m...    34   0.62 
sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pyl...    33   0.81 
sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS...    33   0.81 
sp|Q92SM6|DUT_RHIME Deoxyuridine 5'-triphosphate nucleotidohydro...    33   0.81 
sp|A6UFD9|DUT_SINMW Deoxyuridine 5'-triphosphate nucleotidohydro...    33   1.1  
sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pyl...    32   1.8  
sp|Q5SS00|ZDBF2_MOUSE DBF4-type zinc finger-containing protein 2...    32   2.3  
sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase OS...    32   2.3  
sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase OS...    32   2.3  
sp|Q98C10|DUT_RHILO Deoxyuridine 5'-triphosphate nucleotidohydro...    32   2.3  
sp|Q9P5N4|YH81_SCHPO Uncharacterized amino-acid permease C359.01...    32   3.1  
sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase OS...    32   3.1  
sp|Q9HMN2|PFDA_HALSA Prefoldin subunit alpha OS=Halobacterium sa...    32   3.1  
sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase...    31   4.0  
sp|A4IZA6|PNP_FRATW Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|Q5NGX7|PNP_FRATT Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|Q0BKU1|PNP_FRATO Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|A0Q5I9|PNP_FRATN Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|Q2A269|PNP_FRATH Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|A7NDP3|PNP_FRATF Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|Q14IC9|PNP_FRAT1 Polyribonucleotide nucleotidyltransferase OS...    31   5.2  
sp|Q1MMG6|DUT_RHIL3 Deoxyuridine 5'-triphosphate nucleotidohydro...    31   5.2  
sp|P33338|SLA2_YEAST Protein SLA2 OS=Saccharomyces cerevisiae GN...    31   5.3  
sp|Q5UQY3|YL887_MIMIV Putative JmjC domain-containing protein L8...    30   6.8  
sp|B0TZ09|PNP_FRAP2 Polyribonucleotide nucleotidyltransferase OS...    30   6.8  

>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria
           meningitidis serogroup B GN=rpsA PE=1 SV=1
          Length = 561

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 338 IKAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEI 484
           I   +K +   G FV LP G DG +   DL +T       R +K+G+E+
Sbjct: 368 ISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEV 416



 Score = 33.5 bits (75), Expect = 0.81
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
 Frame = +2

Query: 224 RSYRREPIPNISELDLEEEVSRIDMDPKKMMQEGDPLA-----------IKAVIKDVMPV 370
           R Y++        L ++ E  RI +  K++  EGDP             +K  +K V   
Sbjct: 408 RKYKKGEEVEAVVLAIDVEKERISLGIKQL--EGDPFGNFISVNDKGSLVKGSVKSVDAK 465

Query: 371 GYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIVCRGGAGREIVSIKKPEF 550
           G  ++L    +GYLPA +      +  L    KEG E+   IV      R I    K + 
Sbjct: 466 GAVIALSDEVEGYLPASEFA-ADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKD 524

Query: 551 APPSEQ 568
           A  S +
Sbjct: 525 AKESRE 530


>sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis GN=pnp PE=3 SV=1
          Length = 708

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 341 KAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIV 499
           K  ++ +MP G FV    G+DG L   ++ +     + +   KEG EI V+++
Sbjct: 633 KGKVRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
           GN=pnp PE=3 SV=1
          Length = 708

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 341 KAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIV 499
           K  ++ +MP G FV    G+DG L   ++ +     + +   KEG EI V+++
Sbjct: 633 KGKVRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03c
           OS=Schizosaccharomyces pombe GN=SPBC359.03c PE=2 SV=1
          Length = 579

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 323 GDPLAIKAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIVC 502
           G+   + A+IK V  VG+ +       G +P D  G+ GG  I Q+ F+ G + +  +  
Sbjct: 212 GEVEFVLALIKVVATVGFIILAIIINCGGVPTDHRGYIGGSIIKQKPFRHGFKGFCSVYT 271

Query: 503 RGG---AGREIVSIKKPEFAPP 559
                 +G EIV +   E   P
Sbjct: 272 TAAFSFSGTEIVGLAAAEVGDP 293


>sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides thetaiotaomicron GN=pnp PE=3 SV=1
          Length = 708

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 341 KAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIV 499
           K  ++ +MP G F+    G+DG L   ++ +     + +   KEG EI V+++
Sbjct: 633 KGKVRSIMPYGAFIEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|O09131|GSTO1_MOUSE Glutathione S-transferase omega-1 OS=Mus
           musculus GN=Gsto1 PE=2 SV=2
          Length = 240

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 MTPSSHSLKSPAIANFYRSYRREPIPNISELDLEEEVSRID--MDPKKMMQEGD 328
           MT  S S   P IA+F RS R+E  PN+ E  LE E  +++  MD  K    GD
Sbjct: 115 MTLESFSKVPPLIASFVRSKRKEDSPNLREA-LENEFKKLEEGMDNYKSFLGGD 167


>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori
           J99 GN=rpsA PE=3 SV=1
          Length = 552

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +2

Query: 305 KKMMQEGDPLAIKAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEI 484
           K++++  +P  +  V++ + P G FV    G DG +   ++   G +   ++ +KEG E+
Sbjct: 194 KELLEATEP--VLGVVRQITPFGIFVKF-KGIDGLVHYSEISHKGPVNP-EKYYKEGDEV 249

Query: 485 YVRIVCRGGAGREI-VSIKKPEFAPPSEQKD 574
           YV+ +      R + +SIK     P  E +D
Sbjct: 250 YVKAIAYDEEKRRLSLSIKATIEDPWEEIQD 280



 Score = 32.0 bits (71), Expect = 2.3
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
 Frame = +2

Query: 158 EGISSMTPSSHSLKSPAIANFYRSYRREPIPNISELDLEEEVSRIDMDPKKMMQEG---- 325
           +G+   +  SH  K P     Y  Y+      +  +  +EE  R+ +  K  +++     
Sbjct: 223 DGLVHYSEISH--KGPVNPEKY--YKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEI 278

Query: 326 -DPL----AIKAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYV 490
            D L    AIK V+ ++   G FV + +  +G+L   ++ +   ++        GQEI V
Sbjct: 279 QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDV 338

Query: 491 RIVCRGGAGREI-VSIKK 541
           +I+      R + VS+K+
Sbjct: 339 KIIDIDPKNRRLRVSLKQ 356


>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=pnp PE=3 SV=1
          Length = 711

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 350 IKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIV 499
           ++ VMP G FV    G+DG L   ++ +     I +   KEG EI V+++
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEIEVKLL 685


>sp|Q92SM6|DUT_RHIME Deoxyuridine 5'-triphosphate
           nucleotidohydrolase OS=Rhizobium meliloti GN=dut PE=3
           SV=1
          Length = 160

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 245 IPNISELDLE--EEVSRIDMDPKKMMQEGDPLAIKAVIKDVMPVGYFVSLPSGRDGYL-P 415
           +P+   LDL   E      MD +  +   +P+ I+   + ++P G+   +P+G +G + P
Sbjct: 19  LPHGEGLDLPAYETAGAAGMDLRAALPADEPMTIRPGERALVPTGFIFEIPAGHEGQIRP 78

Query: 416 ADDLGFTGGLAIL 454
              L F  G+  L
Sbjct: 79  RSGLAFKHGITCL 91


>sp|A6UFD9|DUT_SINMW Deoxyuridine 5'-triphosphate
           nucleotidohydrolase OS=Sinorhizobium medicae (strain
           WSM419) GN=dut PE=3 SV=1
          Length = 160

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 260 ELDLEEEVSRIDMDPKKMMQEGDPLAIKAVIKDVMPVGYFVSLPSGRDGYL-PADDLGFT 436
           +L   E      MD +  +   +P+ I+   + ++P G+   +P+G +G + P   L F 
Sbjct: 26  DLPAYETAGAAGMDLRAAVPADEPMTIRPGARTLVPTGFVFEIPAGHEGQIRPRSGLAFK 85

Query: 437 GGLAIL 454
            G+  L
Sbjct: 86  HGITCL 91
tr_hit_id A6E805
Definition tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39
Align length 79
Score (bit) 40.8
E-value 0.057
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955828|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_C06, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas...    41   0.057
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo...    40   0.13 
tr|A9IJJ0|A9IJJ0_BORPD 30S ribosomal protein S1 OS=Bordetella pe...    39   0.17 
tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte...    39   0.22 
tr|Q7WGU4|Q7WGU4_BORBR 30S ribosomal protein S1 OS=Bordetella br...    39   0.28 
tr|Q7W604|Q7W604_BORPA 30S ribosomal protein S1 OS=Bordetella pa...    39   0.28 
tr|Q7VZG0|Q7VZG0_BORPE 30S ribosomal protein S1 OS=Bordetella pe...    39   0.28 
tr|Q7NTK8|Q7NTK8_CHRVO 30S ribosomal protein S1 OS=Chromobacteri...    39   0.28 
tr|Q47GJ9|Q47GJ9_DECAR SSU ribosomal protein S1P OS=Dechloromona...    39   0.28 
tr|Q2L2S5|Q2L2S5_BORA1 30S ribosomal protein S1 OS=Bordetella av...    39   0.28 
tr|Q0AA52|Q0AA52_ALHEH SSU ribosomal protein S1P OS=Alkalilimnic...    39   0.28 
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...    39   0.28 
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th...    38   0.37 
tr|B3QQD6|B3QQD6_CHLP8 RNA binding S1 domain protein OS=Chloroba...    38   0.37 
tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto...    38   0.48 
tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum...    37   0.82 
tr|A5EWQ1|A5EWQ1_DICNV Ribosomal protein S1 OS=Dichelobacter nod...    37   0.82 
tr|A4SW56|A4SW56_POLSQ SSU ribosomal protein S1P OS=Polynucleoba...    37   0.82 
tr|Q1YRR9|Q1YRR9_9GAMM 30S ribosomal protein S1 OS=gamma proteob...    37   0.82 
tr|Q8E1N0|Q8E1N0_STRA5 General stress protein, putative OS=Strep...    37   1.1  
tr|Q3K357|Q3K357_STRA1 General stress protein, putative OS=Strep...    37   1.1  
tr|Q3DUV9|Q3DUV9_STRAG General stress protein GSP13 OS=Streptoco...    37   1.1  
tr|Q3DMS4|Q3DMS4_STRAG S1 RNA-binding domain protein OS=Streptoc...    37   1.1  
tr|Q3DH73|Q3DH73_STRAG S1 RNA-binding domain protein OS=Streptoc...    37   1.1  
tr|Q3DA93|Q3DA93_STRAG S1 RNA-binding domain protein OS=Streptoc...    37   1.1  
tr|Q3D4J1|Q3D4J1_STRAG S1 RNA-binding domain protein OS=Streptoc...    37   1.1  
tr|A6GU99|A6GU99_9BURK 30S ribosomal protein S1 OS=Limnobacter s...    37   1.1  
tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu...    36   1.4  
tr|B1Y2M0|B1Y2M0_LEPCP Ribosomal protein S1 OS=Leptothrix cholod...    36   1.4  
tr|B7YRV4|B7YRV4_VARPD Ribosomal protein S1 OS=Variovorax parado...    36   1.4  

>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase
           OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1
          Length = 715

 Score = 40.8 bits (94), Expect = 0.057
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +2

Query: 350 IKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVRIVCRGGAGREIV 529
           +K +MP G FV +  G+DG L   ++ +T  L  +  +FKEG ++ V+++     G+  +
Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694

Query: 530 SIK-------KPEFAPPSE 565
           S K       KPE AP ++
Sbjct: 695 SRKVLLPRPPKPEGAPANK 713


>tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1
           OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
           DSM 11347 / YP87) GN=THEYE_A1770 PE=4 SV=1
          Length = 534

 Score = 39.7 bits (91), Expect = 0.13
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
 Frame = +2

Query: 251 NISELDLEEEVSRIDMDPKKMMQE-----------GDPLAIKAVIKDVMPVGYFVSLPSG 397
           N+  LD++ E  +I +  K++  +           GD ++ K  +K +   G FV LP G
Sbjct: 341 NVKVLDIDRENRKISLSFKQLKPKPWEVVAKKYKVGDRISGK--VKTITDFGIFVRLPEG 398

Query: 398 RDGYLPADDLGFTGGLAILQRLFKEGQEI 484
            DG +   D+ +T  +    ++FK+GQ++
Sbjct: 399 VDGLIHISDISWTKHIDHPSQIFKKGQKV 427


>tr|A9IJJ0|A9IJJ0_BORPD 30S ribosomal protein S1 OS=Bordetella
           petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
           GN=rpsA PE=4 SV=1
          Length = 575

 Score = 39.3 bits (90), Expect = 0.17
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMMQE-----------GDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++E+  RI +  K+  Q            GD   ++  IK +   G FV LP G DG 
Sbjct: 347 LEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDK--VRGAIKSITDFGVFVGLPGGIDGL 404

Query: 410 LPADDLGFTGGLAILQRLFKEGQEI 484
           +   DL +T       R FK+G EI
Sbjct: 405 VHLSDLSWTESGEEAVRNFKKGDEI 429


>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512
           PE=4 SV=1
          Length = 150

 Score = 38.9 bits (89), Expect = 0.22
 Identities = 25/82 (30%), Positives = 42/82 (51%)
 Frame = +2

Query: 314 MQEGDPLAIKAVIKDVMPVGYFVSLPSGRDGYLPADDLGFTGGLAILQRLFKEGQEIYVR 493
           M+ G    ++  +  +   G FVSLP G+ G +   ++ ++    +   L KEGQE+ V+
Sbjct: 1   MEFGVGSILEGKVTGLTKFGAFVSLPEGKSGLVHISEIAYSYVNDVKDYL-KEGQEVKVK 59

Query: 494 IVCRGGAGREIVSIKKPEFAPP 559
           ++     GR  +SIKK    PP
Sbjct: 60  VIGIDENGRINLSIKKAMDPPP 81


>tr|Q7WGU4|Q7WGU4_BORBR 30S ribosomal protein S1 OS=Bordetella
           bronchiseptica GN=rpsA PE=4 SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMMQE-----------GDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++E+  RI +  K+  Q            GD   ++  IK +   G FV LP G DG 
Sbjct: 348 LEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDK--VRGAIKSITDFGVFVGLPGGIDGL 405

Query: 410 LPADDLGFTGGLAILQRLFKEGQEI 484
           +   DL +T       R FK+G E+
Sbjct: 406 VHLSDLSWTESGEEAVRNFKKGDEL 430


>tr|Q7W604|Q7W604_BORPA 30S ribosomal protein S1 OS=Bordetella
           parapertussis GN=rpsA PE=4 SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMMQE-----------GDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++E+  RI +  K+  Q            GD   ++  IK +   G FV LP G DG 
Sbjct: 348 LEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDK--VRGAIKSITDFGVFVGLPGGIDGL 405

Query: 410 LPADDLGFTGGLAILQRLFKEGQEI 484
           +   DL +T       R FK+G E+
Sbjct: 406 VHLSDLSWTESGEEAVRNFKKGDEL 430


>tr|Q7VZG0|Q7VZG0_BORPE 30S ribosomal protein S1 OS=Bordetella
           pertussis GN=rpsA PE=4 SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMMQE-----------GDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++E+  RI +  K+  Q            GD   ++  IK +   G FV LP G DG 
Sbjct: 348 LEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDK--VRGAIKSITDFGVFVGLPGGIDGL 405

Query: 410 LPADDLGFTGGLAILQRLFKEGQEI 484
           +   DL +T       R FK+G E+
Sbjct: 406 VHLSDLSWTESGEEAVRNFKKGDEL 430


>tr|Q7NTK8|Q7NTK8_CHRVO 30S ribosomal protein S1 OS=Chromobacterium
           violaceum GN=rpsA PE=4 SV=1
          Length = 563

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMM-----------QEGDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++E+  RI +  K+ +            +GD L  K  IK +   G FV LP G DG 
Sbjct: 337 LEIDEDRRRISLGMKQCLANPWNEFADNFHKGDKL--KGAIKSITDFGVFVGLPGGIDGL 394

Query: 410 LPADDLGFTGGLAILQRLFKEGQEI 484
           +   DL +        R FK+G E+
Sbjct: 395 VHLSDLSWNEAGEEAVRKFKKGDEV 419


>tr|Q47GJ9|Q47GJ9_DECAR SSU ribosomal protein S1P OS=Dechloromonas
           aromatica (strain RCB) GN=Daro_1280 PE=4 SV=1
          Length = 559

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMM-----------QEGDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++EE  RI +  K+             ++GD   +K  IK +   G F+ LP G DG 
Sbjct: 332 LEIDEERRRISLGMKQCQANPWDDFAMNHKKGDK--VKGAIKSITDFGIFIGLPGGIDGL 389

Query: 410 LPADDLGF--TGGLAILQRLFKEGQEI 484
           +   DL +  TG  AI  R FK+G E+
Sbjct: 390 VHLSDLSWSATGEEAI--RNFKKGDEV 414


>tr|Q2L2S5|Q2L2S5_BORA1 30S ribosomal protein S1 OS=Bordetella avium
           (strain 197N) GN=rpsA PE=4 SV=1
          Length = 570

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +2

Query: 263 LDLEEEVSRIDMDPKKMMQE-----------GDPLAIKAVIKDVMPVGYFVSLPSGRDGY 409
           L+++E+  RI +  K+  Q            GD   ++  IK +   G FV LP G DG 
Sbjct: 342 LEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDK--VRGAIKSITDFGVFVGLPGGIDGL 399

Query: 410 LPADDLGFTGGLAILQRLFKEGQEI 484
           +   DL +T       R FK+G EI
Sbjct: 400 VHLSDLSWTETGEEAVRNFKKGDEI 424