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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955843
Clone id TST39A01NGRL0024_C21
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_C21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTGCATTGGAGATGACAAGGCCTCTCACAAGCCTTCCTAGAAGATTTCTGGGTGAGACTT
TGGGCATCACATCAGGCCCGTCGGATCTCCACATTTTAGTAGTTGGTTGCCGATCGAGGG
GTAGCAGTGGGCACTTGGCTGGTTTATAGTGGCTTCCCCCTACTTGCAGCAGATGTGGGC
ATGAACTAGAGACACAGAGACACTGCTTACGGGATTGCTCTCATGCGCATCAGATTTGGC
TTCAGATTCTTCATCTCCTGGCCTCGCTTACACCCGAGGGTGTTTAGACATGGGGAGCCG
CAGCCAGGTCGACATCCTCTGGGCCAGCCCTTGGATACGAGGCGTCTCCCGACACTGTGG
CTATTCATGCAGTTTACTGCACCAGGCTTCACAGATTCACCTTGGATGGTTGCTAGAGAG
CCTCATTGGGAGCTTCTCAACAGCCTCACTATCTGGTTCGTATGGTAACCAAGTGCAATA
GAGCTATAGATGGGACGGACGGAGCCTCGAGCAGAGACAATTCGAGCAATATGGATAGAG
TTTATTCACACC
■■Homology search results ■■ -
sp_hit_id Q8VYU4
Definition sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana
Align length 48
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955843|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_C21, 5'
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homo...    31   4.6  
sp|Q0AKF5|SYL_MARMM Leucyl-tRNA synthetase OS=Maricaulis maris (...    30   7.9  

>sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog
           6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2
          Length = 754

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 283 FRHGEPQPGRHPLGQPLDTRRLPTLWLFMQFTAPGFTDSPWMVAREPH 426
           FRHGEP     P   PLD R+ P      +F  P  +   W   R+P+
Sbjct: 81  FRHGEPYRQHQP---PLDQRQQPPFNQNYEFRPPPPSRGQWQQFRQPN 125


>sp|Q0AKF5|SYL_MARMM Leucyl-tRNA synthetase OS=Maricaulis maris
           (strain MCS10) GN=leuS PE=3 SV=1
          Length = 865

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 358 WLFMQFTAPGFTDSPWMVAREPHW 429
           W F++FT+P   D+P++ +   HW
Sbjct: 511 WYFLRFTSPWSEDTPFLASDAEHW 534
tr_hit_id Q1SMZ7
Definition tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula
Align length 30
Score (bit) 44.3
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955843|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_C21, 5'
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula GN=...    44   0.004
tr|Q2HVE2|Q2HVE2_MEDTR RNA-directed DNA polymerase (Reverse tran...    42   0.022
tr|Q2HUN6|Q2HUN6_MEDTR RNA-directed DNA polymerase (Reverse tran...    41   0.048
tr|Q6H671|Q6H671_ORYSJ Putative uncharacterized protein OJ1112_F...    40   0.082
tr|Q8S7Y0|Q8S7Y0_ORYSA Putative retroelement OS=Oryza sativa GN=...    39   0.14 
tr|Q7XHA9|Q7XHA9_ORYSJ Retrotransposon protein, putative, LINE s...    39   0.14 
tr|Q7XPS4|Q7XPS4_ORYSJ OSJNBa0065O17.7 protein OS=Oryza sativa s...    39   0.24 
tr|Q2QUY9|Q2QUY9_ORYSJ Retrotransposon protein, putative, LINE s...    39   0.24 
tr|Q0D901|Q0D901_ORYSJ Os07g0115700 protein OS=Oryza sativa subs...    39   0.24 
tr|Q851P0|Q851P0_ORYSJ Putative uncharacterized protein OSJNBa00...    38   0.31 
tr|Q6K4X1|Q6K4X1_ORYSJ Putative uncharacterized protein OSJNBa00...    37   0.90 
tr|A2Q4Z8|A2Q4Z8_MEDTR RNA-directed DNA polymerase ; Ribonucleas...    37   0.90 
tr|A2YV59|A2YV59_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.2  
tr|Q7XT18|Q7XT18_ORYSJ OSJNBb0050O03.4 protein OS=Oryza sativa s...    36   1.5  
tr|Q75LZ3|Q75LZ3_ORYSJ Putative uncharacterized protein P0676G05...    36   1.5  
tr|B8BD74|B8BD74_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|Q9LSE9|Q9LSE9_ARATH Reverse transcriptase-like protein OS=Ara...    35   2.6  
tr|Q2R262|Q2R262_ORYSJ Retrotransposon protein, putative, unclas...    35   2.6  
tr|A4PSD6|A4PSD6_MEDTR RNA-directed DNA polymerase (Reverse tran...    35   2.6  
tr|A3CCK7|A3CCK7_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.6  
tr|Q1SN20|Q1SN20_MEDTR Polynucleotidyl transferase, Ribonuclease...    34   5.9  
tr|B6LVX5|B6LVX5_BRAFL Putative uncharacterized protein OS=Branc...    34   5.9  
tr|B6LVE1|B6LVE1_BRAFL Putative uncharacterized protein OS=Branc...    34   5.9  
tr|A3Y8Y8|A3Y8Y8_9GAMM ATP-dependent helicase HrpB OS=Marinomona...    33   10.0 
tr|Q9ZQG1|Q9ZQG1_ARATH Putative non-LTR retroelement reverse tra...    33   10.0 
tr|B8B3S2|B8B3S2_ORYSI Putative uncharacterized protein OS=Oryza...    33   10.0 
tr|Q8MR83|Q8MR83_DROME AT11715p OS=Drosophila melanogaster GN=mu...    33   10.0 
tr|Q0E9A5|Q0E9A5_DROME Muskelin, isoform A OS=Drosophila melanog...    33   10.0 
tr|B4QDE2|B4QDE2_DROSI GD25828 OS=Drosophila simulans GN=GD25828...    33   10.0 
tr|B4HPL8|B4HPL8_DROSE GM20349 OS=Drosophila sechellia GN=GM2034...    33   10.0 

>tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula
           GN=MtrDRAFT_AC139526g25v2 PE=4 SV=1
          Length = 438

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 159 PTCSRCGHELETQRHCLRDCSHAHQIWLQI 248
           PTC+RCG E ET  HC+RDC  +  IW +I
Sbjct: 159 PTCARCGEEDETFLHCVRDCHFSRSIWQKI 188


>tr|Q2HVE2|Q2HVE2_MEDTR RNA-directed DNA polymerase (Reverse
           transcriptase); Polynucleotidyl transferase,
           Ribonuclease H fold OS=Medicago truncatula
           GN=MtrDRAFT_AC148918g30v2 PE=4 SV=2
          Length = 729

 Score = 42.0 bits (97), Expect = 0.022
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 153 LPPTCSRCGHELETQRHCLRDCSHAHQIWLQIL 251
           + PTC  C  E ET  H LRDC H+ Q+WL+++
Sbjct: 501 ISPTCPCCAREDETVIHVLRDCVHSTQVWLRLI 533


>tr|Q2HUN6|Q2HUN6_MEDTR RNA-directed DNA polymerase (Reverse
            transcriptase); Ribonuclease H OS=Medicago truncatula
            GN=MtrDRAFT_AC149130g44v2 PE=4 SV=2
          Length = 1296

 Score = 40.8 bits (94), Expect = 0.048
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 162  TCSRCGHELETQRHCLRDCSHAHQIW 239
            TCSRCG   E+  HC+RDC H+  IW
Sbjct: 1017 TCSRCGENDESFLHCVRDCKHSAAIW 1042


>tr|Q6H671|Q6H671_ORYSJ Putative uncharacterized protein
           OJ1112_F09.38 (Putative uncharacterized protein
           P0708H12.17) OS=Oryza sativa subsp. japonica
           GN=OJ1112_F09.38 PE=4 SV=1
          Length = 60

 Score = 40.0 bits (92), Expect = 0.082
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 159 PTCSRCGHELETQRHCLRDCSHAHQIWLQIL 251
           P CS C  ELE   H L DC  A Q+WL++L
Sbjct: 14  PVCSFCAQELEMTNHILLDCVFAWQVWLRVL 44


>tr|Q8S7Y0|Q8S7Y0_ORYSA Putative retroelement OS=Oryza sativa
           GN=OSJNBa0015O22.23 PE=4 SV=1
          Length = 335

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3

Query: 174 CGHELETQRHCLRDCSHAHQIWLQILHLLASLT 272
           CG ELET  H L DC  A Q+WL++L  L   T
Sbjct: 235 CGQELETANHILLDCIFARQVWLRVLSPLGWTT 267


>tr|Q7XHA9|Q7XHA9_ORYSJ Retrotransposon protein, putative, LINE
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g02090 PE=4 SV=1
          Length = 335

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3

Query: 174 CGHELETQRHCLRDCSHAHQIWLQILHLLASLT 272
           CG ELET  H L DC  A Q+WL++L  L   T
Sbjct: 235 CGQELETANHILLDCIFARQVWLRVLSPLGWTT 267


>tr|Q7XPS4|Q7XPS4_ORYSJ OSJNBa0065O17.7 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0065O17.7 PE=4 SV=2
          Length = 3331

 Score = 38.5 bits (88), Expect = 0.24
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 111  RSRGSSGHLAGL*WLPPTCSRCGHELETQRHCLRDCSHAHQIWLQIL 251
            + RG   H A        C  C  ELET  H L DC  A Q+WL++L
Sbjct: 1549 QKRGIDSHSA--------CPFCAQELETANHILIDCVFARQVWLRVL 1587


>tr|Q2QUY9|Q2QUY9_ORYSJ Retrotransposon protein, putative, LINE
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g14630 PE=4 SV=1
          Length = 579

 Score = 38.5 bits (88), Expect = 0.24
 Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +3

Query: 165 CSRCGHELETQRHCLRDCSHAHQIWLQI-----LHL-LASLTPEGV*TW 293
           C  CG ELET  H L DCS A Q+W  I     LH+ LASL    +  W
Sbjct: 531 CPLCGVELETATHLLMDCSFAKQVWRLIWQKAGLHMPLASLFNGDMLAW 579


>tr|Q0D901|Q0D901_ORYSJ Os07g0115700 protein OS=Oryza sativa subsp.
            japonica GN=Os07g0115700 PE=4 SV=1
          Length = 2820

 Score = 38.5 bits (88), Expect = 0.24
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 111  RSRGSSGHLAGL*WLPPTCSRCGHELETQRHCLRDCSHAHQIWLQIL 251
            + RG   H A        C  C  ELET  H L DC  A Q+WL++L
Sbjct: 2029 QKRGIDSHSA--------CPFCAQELETANHILIDCVFARQVWLRVL 2067


>tr|Q851P0|Q851P0_ORYSJ Putative uncharacterized protein
           OSJNBa0042I09.4 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0042I09.4 PE=4 SV=1
          Length = 334

 Score = 38.1 bits (87), Expect = 0.31
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +3

Query: 162 TCSRCGHELETQRHCLRDCSHAHQIWLQILHLLASLTPEGV*TWGAAARSTSSGPALG 335
           TC  C  ELET  H L D   A Q+WL++      L+P G   W A +   ++G   G
Sbjct: 100 TCPFCAQELETANHILLDYVFARQVWLRV------LSPPG---WNALSPPVAAGSRTG 148