DK955847
Clone id TST39A01NGRL0024_D01
Library
Length 617
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_D01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CAGAGGAGCTCCTACAGTGCTCTCTCCTCTCCTCCTCCGCAAATTCGAGCTTGATCTGCG
TTTTCCTCTCTTCTTGCAGTACTTCAGATCTCAAGAGTAACCTCCCTTATCACAATGGCT
CTCTCTCAAATCAGTGGAAGGATTGCTTTCTCCAATCTTGTTACCATCCTCGTGGTGATG
GGTGTTTTGGCAATGGCCGGACAAAGTGCAATGGCACAAGTTGAACCTCCTACTCCAACT
CCCACAACTGGTGATGATAATGCTGCTACTTTAACCCCAGTTGCGTTTCTTGCCACGGCT
TTTGCCTCTCTCCTTGTTGGAGTGTTTTTGAGCTACTAATTCTTTCAATCATGTGAGCAC
ATTGAGAGGGAGTGGCAACTTTTGTATTTGACCTACCCTACATATGATGAGTTACGAGAC
ACACCGTAGGAACTCCAGCTCCCATTTCCTACCTATACCTAGCGATTTCATCTGCTTTTT
ATAGAGTCATGTGTCACTGTTGTTTCTTGCGGCTCTTTAAACACACCCGTATTACTCCAG
AGAAGCCATCTCGACAACCCCCACATTGGTAAGCATCTTCATTTGCATCCTGTCCAGATG
ATGTGGGGCTACTTCCC
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 58
Score (bit) 32.0
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955847|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D01, 5'
(617 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE... 32 2.6
sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation p... 32 2.6
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE... 30 7.6
sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae ... 30 9.9

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
SV=1
Length = 798

Score = 32.0 bits (71), Expect = 2.6
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +3

Query: 150 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 317
+ SC P G C G+GR KCN C Y+ C C G C +PC
Sbjct: 602 MDSCISPEGGLCSGHGRCKCNRCQ-------------CLDGYYGALCDQCPG-CKTPC 645


>sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation
protein hypB OS=Synechocystis sp. (strain PCC 6803)
GN=hypB PE=3 SV=1
Length = 285

Score = 32.0 bits (71), Expect = 2.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3

Query: 216 CHCTLSGHCQNTHHHEDGNKIGESNPSTDLRESHCDKGGYS 94
C C+ G ++HHH S+ D +E H G YS
Sbjct: 5 CGCSAVGTVAHSHHHHGDGNFAHSHDDHDQQEHHHHHGNYS 45


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
SV=2
Length = 769

Score = 30.4 bits (67), Expect = 7.6
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +3

Query: 153 QSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSCHGFCLSPC 317
+ C +PR C G GR +CN H+ Y P C C G C SPC
Sbjct: 580 EGCLNPRRVECSGRGRCRCN------VCECHSG-----YQLPLCQECPG-CPSPC 622


>sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae
GN=RNH1 PE=1 SV=2
Length = 348

Score = 30.0 bits (66), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3

Query: 57 CVFLSSCSTS---DLKSNLPYHNGSLSNQWKDC 146
C LSS +T+ +KSN+P + N WKDC
Sbjct: 97 CSSLSSANTNTFYSVKSNVPNIESKIFNNWKDC 129


tr_hit_id A7Q1Q0
Definition tr|A7Q1Q0|A7Q1Q0_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera
Align length 47
Score (bit) 69.7
E-value 1.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955847|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D01, 5'
(617 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7Q1Q0|A7Q1Q0_VITVI Chromosome chr7 scaffold_44, whole genome... 70 1e-10
tr|B8LQ84|B8LQ84_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10
tr|A7QKN1|A7QKN1_VITVI Chromosome chr2 scaffold_113, whole genom... 69 2e-10
tr|Q6K9N5|Q6K9N5_ORYSJ Os02g0621800 protein OS=Oryza sativa subs... 67 8e-10
tr|B8AFT8|B8AFT8_ORYSI Putative uncharacterized protein OS=Oryza... 67 8e-10
tr|B5WWZ9|B5WWZ9_LOTJA Long chain fatty alcohol oxidase FAO2 OS=... 65 3e-09
tr|B4G214|B4G214_MAIZE Putative uncharacterized protein OS=Zea m... 65 4e-09
tr|B6SXM3|B6SXM3_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1 64 7e-09
tr|Q8W5N7|Q8W5N7_ORYSA Putative alcohol oxidase OS=Oryza sativa ... 63 1e-08
tr|Q7XDG3|Q7XDG3_ORYSJ Os10g0474100 protein OS=Oryza sativa subs... 63 1e-08
tr|A2Z8H1|A2Z8H1_ORYSI Putative uncharacterized protein OS=Oryza... 63 1e-08
tr|Q8W5P3|Q8W5P3_ORYSA Putative alcohol oxidase OS=Oryza sativa ... 63 2e-08
tr|Q7XDF7|Q7XDF7_ORYSJ Os10g0474800 protein OS=Oryza sativa subs... 63 2e-08
tr|B8BHG0|B8BHG0_ORYSI Putative uncharacterized protein OS=Oryza... 63 2e-08
tr|B4G0N6|B4G0N6_MAIZE Putative uncharacterized protein OS=Zea m... 63 2e-08
tr|A3C5P2|A3C5P2_ORYSJ Putative uncharacterized protein OS=Oryza... 63 2e-08
tr|A7NXF0|A7NXF0_VITVI Chromosome chr5 scaffold_2, whole genome ... 62 2e-08
tr|A5AH38|A5AH38_VITVI Putative uncharacterized protein OS=Vitis... 62 2e-08
tr|A3A965|A3A965_ORYSJ Putative uncharacterized protein OS=Oryza... 62 3e-08
tr|A9S9A5|A9S9A5_PHYPA Predicted protein OS=Physcomitrella paten... 62 4e-08
tr|O65709|O65709_ARATH Putative uncharacterized protein AT4g1938... 60 1e-07
tr|A9S535|A9S535_PHYPA Predicted protein OS=Physcomitrella paten... 60 1e-07
tr|Q8W5P8|Q8W5P8_ORYSA Putative oxidase OS=Oryza sativa GN=OSJNB... 59 3e-07
tr|Q8W5P5|Q8W5P5_ORYSA Putative alcohol oxidase OS=Oryza sativa ... 59 3e-07
tr|Q337K8|Q337K8_ORYSJ Os10g0475000 protein OS=Oryza sativa subs... 59 3e-07
tr|B8BHG1|B8BHG1_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07
tr|Q9ZWB9|Q9ZWB9_ARATH F21M11.7 protein OS=Arabidopsis thaliana ... 58 4e-07
tr|Q9M0H4|Q9M0H4_ARATH Putative uncharacterized protein AT4g2857... 57 9e-07
tr|Q94BP3|Q94BP3_ARATH Putative uncharacterized protein At4g2857... 57 9e-07
tr|Q8LDP0|Q8LDP0_ARATH Putative uncharacterized protein OS=Arabi... 57 9e-07

>tr|A7Q1Q0|A7Q1Q0_VITVI Chromosome chr7 scaffold_44, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028553001
PE=4 SV=1
Length = 722

Score = 69.7 bits (169), Expect = 1e-10
Identities = 33/47 (70%), Positives = 38/47 (80%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L IE+ VTV +CGSL TP LL S L+NPHIGK+LHLHPV M+WGYF
Sbjct: 440 LQIEARVTVSACGSLLTPPLLLSSGLENPHIGKNLHLHPVLMVWGYF 486


>tr|B8LQ84|B8LQ84_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 743

Score = 68.9 bits (167), Expect = 2e-10
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
+F+++ VTV +CGSL TP+LL+ S L NP+IG++LHLHPVQM WG+F
Sbjct: 461 IFVQAKVTVAACGSLLTPLLLRSSGLRNPNIGRNLHLHPVQMAWGFF 507


>tr|A7QKN1|A7QKN1_VITVI Chromosome chr2 scaffold_113, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001190001
PE=4 SV=1
Length = 813

Score = 68.9 bits (167), Expect = 2e-10
Identities = 29/48 (60%), Positives = 40/48 (83%)
Frame = +1

Query: 472 LLFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
+ +ES VT+V+CG+++TP LL+RS L NP+IGK+LHLHPV M WG+F
Sbjct: 478 VFMVESKVTIVACGAISTPGLLKRSGLKNPNIGKNLHLHPVAMAWGHF 525


>tr|Q6K9N5|Q6K9N5_ORYSJ Os02g0621800 protein OS=Oryza sativa subsp.
japonica GN=OJ1234_B11.20 PE=4 SV=1
Length = 770

Score = 67.0 bits (162), Expect = 8e-10
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L + + VTV + GSL TPVLLQRS L NPHIGK+LHLHP + WGYF
Sbjct: 489 LEVRAKVTVSAAGSLLTPVLLQRSGLTNPHIGKNLHLHPTALAWGYF 535


>tr|B8AFT8|B8AFT8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08118 PE=4 SV=1
Length = 770

Score = 67.0 bits (162), Expect = 8e-10
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L + + VTV + GSL TPVLLQRS L NPHIGK+LHLHP + WGYF
Sbjct: 489 LEVRAKVTVSAAGSLLTPVLLQRSGLTNPHIGKNLHLHPTALAWGYF 535


>tr|B5WWZ9|B5WWZ9_LOTJA Long chain fatty alcohol oxidase FAO2
OS=Lotus japonicus GN=fao2 PE=2 SV=1
Length = 750

Score = 65.1 bits (157), Expect = 3e-09
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L IES VT+ +CGSL+TP L+ S L NP+IGK+LHLHP Q WGYF
Sbjct: 470 LQIESKVTISACGSLSTPPLMISSGLKNPNIGKNLHLHPCQFAWGYF 516


>tr|B4G214|B4G214_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 466

Score = 64.7 bits (156), Expect = 4e-09
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L IE+ V++ +CG+L TP LL+RS L N HIG +LHLHPV M WGYF
Sbjct: 186 LRIEAKVSIAACGALMTPPLLRRSGLKNRHIGSNLHLHPVSMAWGYF 232


>tr|B6SXM3|B6SXM3_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1
Length = 768

Score = 63.9 bits (154), Expect = 7e-09
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L + + VTV SCGSL TPVLL+ S L N HIGK+LHLHP ++WGYF
Sbjct: 483 LEVTARVTVSSCGSLLTPVLLRGSGLRNRHIGKNLHLHPTALVWGYF 529


>tr|Q8W5N7|Q8W5N7_ORYSA Putative alcohol oxidase OS=Oryza sativa
GN=OSJNBa0001K12.13 PE=4 SV=1
Length = 756

Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L IE+ V+V +CG+L TP LL+ S L N HIG++LHLHPV M WGYF
Sbjct: 463 LRIEAKVSVSACGALMTPPLLRNSGLKNRHIGRNLHLHPVSMAWGYF 509


>tr|Q7XDG3|Q7XDG3_ORYSJ Os10g0474100 protein OS=Oryza sativa subsp.
japonica GN=Os10g0474100 PE=4 SV=2
Length = 784

Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1

Query: 475 LFIESCVTVVSCGSLNTPVLLQRSHLDNPHIGKHLHLHPVQMMWGYF 615
L IE+ V+V +CG+L TP LL+ S L N HIG++LHLHPV M WGYF
Sbjct: 491 LRIEAKVSVSACGALMTPPLLRNSGLKNRHIGRNLHLHPVSMAWGYF 537