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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955852
Clone id TST39A01NGRL0024_D06
Library
Length 577
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_D06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATATGAATAAAAAACAAACAAATGAATAAATACATATTACTCTATGCTCAATAGAGCTCT
CTAGTTTGTGTTTTGTGAAAAAATATTAGTATTATGTGATTGCTGAATTTTTCAGGTGAA
GACGTTTTACTACATTCTAACAGGTACTGGGCACATTTGCTGTAACATGTTTGCTGGTGT
TTTTTACCAGTCTCTCATTGACCTTCTACAGTCATGGTTTGGAAGTGGTAGGATTTGCCA
CACGCTTTTGCTTTTTCAAGATCTCCTTGTGTCAAGTACCCTTTCTCCAGAAGATGCAGC
ATATTTGTTTACCTATGCTAGGATGCGACTGACTCCTGCTGCCATCTCTGCCACCTCTAG
TGGCCACAGCTTGAAAAAGGTTTTTTCTCGTGTGAACTCCTCTGCATCAGCTCATTTGAG
GGTTAATGCTTCTGAAATCTCAGGAAGTGGTCAGCAGAGTCCATTGCGAGAAGACTCAGG
TGATCAGGGCTTGGAAGTTTTTACACCAAGACCCTTGCAGCGGGATAAGTGGTGGCGGGA
CCATGATGGGTTCCTCATCACTGATGCATGGGGAGTA
■■Homology search results ■■ -
sp_hit_id Q13F19
Definition sp|Q13F19|FMT_RHOPS Methionyl-tRNA formyltransferase OS=Rhodopseudomonas palustris (strain BisB5)
Align length 74
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955852|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D06, 5'
         (577 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13F19|FMT_RHOPS Methionyl-tRNA formyltransferase OS=Rhodopse...    32   2.3  
sp|Q2J2C5|FMT_RHOP2 Methionyl-tRNA formyltransferase OS=Rhodopse...    31   3.9  
sp|Q1IYA3|TRMD_DEIGD tRNA (guanine-N(1)-)-methyltransferase OS=D...    30   6.7  
sp|Q54QA0|PMS1_DICDI Mismatch repair endonuclease pms1 OS=Dictyo...    30   8.7  

>sp|Q13F19|FMT_RHOPS Methionyl-tRNA formyltransferase
           OS=Rhodopseudomonas palustris (strain BisB5) GN=fmt PE=3
           SV=1
          Length = 310

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 335 PAAISATSSGHSLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRP 514
           P  ++ ++ GH +  V+SR    A   +++         Q SP+ +++   G+ V TP+ 
Sbjct: 16  PTLLALSAYGHDIAAVYSREPKPAGRGMKL---------QHSPVAQEAQRFGIPVLTPKT 66

Query: 515 LQRDK---WWRDHD 547
           L+ D+    +R HD
Sbjct: 67  LKTDEALAEFRSHD 80


>sp|Q2J2C5|FMT_RHOP2 Methionyl-tRNA formyltransferase
           OS=Rhodopseudomonas palustris (strain HaA2) GN=fmt PE=3
           SV=1
          Length = 312

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +2

Query: 335 PAAISATSSGHSLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRP 514
           P  ++ ++ GH +  V+SR    A   +++         Q SP+ +++   G+ V TP+ 
Sbjct: 16  PTLLALSAYGHDIAAVYSREPKPAGRGMKL---------QHSPVAQEAQRLGIPVLTPKT 66

Query: 515 LQRDK 529
           L+ D+
Sbjct: 67  LRTDE 71


>sp|Q1IYA3|TRMD_DEIGD tRNA (guanine-N(1)-)-methyltransferase
           OS=Deinococcus geothermalis (strain DSM 11300) GN=trmD
           PE=3 SV=1
          Length = 265

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 215 WFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA 352
           W     +  TL    DLL S+ L+P+D+AYL T   + +TP  ++A
Sbjct: 203 WRREQALARTLARRPDLLPSAGLTPQDSAYLLT---LGVTPEQLAA 245


>sp|Q54QA0|PMS1_DICDI Mismatch repair endonuclease pms1
           OS=Dictyostelium discoideum GN=pms1 PE=3 SV=1
          Length = 1022

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +2

Query: 254 FQDLLVSSTLSPEDAAYLFTYARMRLTPAAISATSSGHSLKKVFSRVNSSASAHLRVNAS 433
           F +L    T   E+   + T  +   T    S+ +S  S KK  +  +SS+S++ + N +
Sbjct: 410 FPNLYTLKTEEDENNNKITTPIKKHSTTTTTSSLNSPSSNKKSSNSTSSSSSSNNKNNRN 469

Query: 434 EISGSGQQSPLREDSGDQGLEVFTPRPLQRDKW 532
            +          E+ GD   ++   +PL+R K+
Sbjct: 470 NL----------EEDGDDSFDITDQQPLKRAKY 492
tr_hit_id Q9S9N3
Definition tr|Q9S9N3|Q9S9N3_ARATH T24D18.12 protein OS=Arabidopsis thaliana
Align length 131
Score (bit) 90.1
E-value 8.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955852|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D06, 5'
         (577 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9S9N3|Q9S9N3_ARATH T24D18.12 protein OS=Arabidopsis thaliana...    90   8e-17
tr|Q0WTH0|Q0WTH0_ARATH Putative uncharacterized protein At1g1602...    90   8e-17
tr|Q8L8Y5|Q8L8Y5_ARATH Putative uncharacterized protein OS=Arabi...    90   1e-16
tr|Q9SAG9|Q9SAG9_ARATH F23A5.27 OS=Arabidopsis thaliana GN=F23A5...    89   2e-16
tr|Q8W154|Q8W154_BRAOL Myrosinase (Fragment) OS=Brassica olerace...    77   9e-13
tr|A7P3X8|A7P3X8_VITVI Chromosome chr1 scaffold_5, whole genome ...    65   2e-09
tr|Q7EY72|Q7EY72_ORYSJ Os08g0427300 protein OS=Oryza sativa subs...    65   3e-09
tr|A3BTB1|A3BTB1_ORYSJ Putative uncharacterized protein OS=Oryza...    65   3e-09
tr|B8A2L6|B8A2L6_MAIZE Putative uncharacterized protein OS=Zea m...    64   6e-09
tr|Q93W79|Q93W79_ARATH At1g80910/F23A5_21 OS=Arabidopsis thalian...    47   6e-04
tr|B6LD45|B6LD45_BRAFL Putative uncharacterized protein OS=Branc...    37   1.0  
tr|B6LD32|B6LD32_BRAFL Putative uncharacterized protein OS=Branc...    37   1.0  
tr|A5ZXQ2|A5ZXQ2_9FIRM Putative uncharacterized protein OS=Rumin...    36   1.8  
tr|A9TJF7|A9TJF7_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.8  
tr|A9WIK0|A9WIK0_CHLAA Peptidase S9 prolyl oligopeptidase active...    34   5.1  
tr|B2QRI1|B2QRI1_9CHLR Peptidase S9 prolyl oligopeptidase active...    34   5.1  
tr|B7GAT4|B7GAT4_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.7  
tr|Q4HH79|Q4HH79_CAMCO Riboflavin biosynthesis protein RibF OS=C...    33   8.6  
tr|B4K5S8|B4K5S8_DROMO GI22939 OS=Drosophila mojavensis GN=GI229...    33   8.7  

>tr|Q9S9N3|Q9S9N3_ARATH T24D18.12 protein OS=Arabidopsis thaliana
           GN=At1g16020 PE=4 SV=1
          Length = 502

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
 Frame = +2

Query: 188 QSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA-TSSG 364
           QSL+ +L S  GS R CH+++LFQDLLVS+TLS +D   LFT+A MRLT  A+S+ TSS 
Sbjct: 188 QSLVQVLDSCAGSLR-CHSMILFQDLLVSTTLSADDTVDLFTFAVMRLTSKALSSDTSSW 246

Query: 365 HSLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWRDH 544
             L+K         S+ +  + S ++  G    L   +G+    V   RPLQ DKW +  
Sbjct: 247 SYLRK------GPGSSEIS-SRSNLAPVGSIDSLHSRNGNNMHHVI--RPLQNDKWTKGK 297

Query: 545 DGFLITDAWGV 577
           DGFLITD WG+
Sbjct: 298 DGFLITDIWGL 308


>tr|Q0WTH0|Q0WTH0_ARATH Putative uncharacterized protein At1g16020
           OS=Arabidopsis thaliana GN=At1g16020 PE=2 SV=1
          Length = 368

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
 Frame = +2

Query: 188 QSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA-TSSG 364
           QSL+ +L S  GS R CH+++LFQDLLVS+TLS +D   LFT+A MRLT  A+S+ TSS 
Sbjct: 54  QSLVQVLDSCAGSLR-CHSMILFQDLLVSTTLSADDTVDLFTFAVMRLTSKALSSDTSSW 112

Query: 365 HSLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWRDH 544
             L+K         S+ +  + S ++  G    L   +G+    V   RPLQ DKW +  
Sbjct: 113 SYLRK------GPGSSEIS-SRSNLAPVGSIDSLHSRNGNNMHHVI--RPLQNDKWTKGK 163

Query: 545 DGFLITDAWGV 577
           DGFLITD WG+
Sbjct: 164 DGFLITDIWGL 174


>tr|Q8L8Y5|Q8L8Y5_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 515

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
 Frame = +2

Query: 95  CDC*IF-----QVKTFYYILTGTGHICCNMFA---GVFYQSLIDLLQSWFGSGRICHTLL 250
           C C  F     Q+ TF   L   G +     A    V  QSL+ +L S  GS R CH+++
Sbjct: 162 CCCEFFVGKKLQLPTFRETLRERGTVQMLTLARDTAVEVQSLVQVLDSCAGSLR-CHSMI 220

Query: 251 LFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA-TSSGHSLKKVFSRVNSSASAHLRVN 427
           LFQDLLVS+TLS +D   LFT+A MRLT  A S+ TSS   L+K         S+ +  +
Sbjct: 221 LFQDLLVSTTLSADDTVDLFTFAVMRLTSKAFSSDTSSWSYLRK------GPGSSEIS-S 273

Query: 428 ASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWRDHDGFLITDAWGV 577
            S ++  G    L   +G+    V   RPLQ DKW +  DGFLITD WG+
Sbjct: 274 RSNLAPVGSIDSLHSRNGNNMHHVI--RPLQNDKWTKGKDGFLITDIWGL 321


>tr|Q9SAG9|Q9SAG9_ARATH F23A5.27 OS=Arabidopsis thaliana GN=F23A5.27
           PE=4 SV=1
          Length = 513

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 56/136 (41%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
 Frame = +2

Query: 173 AGVFYQSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA 352
           A +  QSL+ +L S  G+ R CH+++LF DLLVS+TLSP+D   LF ++ MRLT  A+S+
Sbjct: 201 AALEVQSLVGVLDSCAGTVR-CHSVILFHDLLVSTTLSPDDTVDLFAFSVMRLTTNALSS 259

Query: 353 -TSSGHSLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDK 529
            TSS   L+K       S S  +   ++ +   G    L   +G     V   RPLQ DK
Sbjct: 260 GTSSWSYLRK------GSGSPQISSRSTTVPPLGSGGTLPSGNGSSTGRVI--RPLQHDK 311

Query: 530 WWRDHDGFLITDAWGV 577
           W +  DGFL+TD WG+
Sbjct: 312 WSKGKDGFLVTDIWGL 327


>tr|Q8W154|Q8W154_BRAOL Myrosinase (Fragment) OS=Brassica oleracea
           GN=MYR1 PE=2 SV=1
          Length = 306

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
 Frame = +2

Query: 194 LIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA-TSSGHS 370
           L+ +L S  G+ R CH+++LF DLLVS+TLSP+D   LFT++ MRLT  A+S+ TSS   
Sbjct: 1   LVGVLDSCAGTLR-CHSVILFHDLLVSTTLSPDDTVDLFTFSVMRLTSNALSSGTSSWSY 59

Query: 371 LKK---VFSRVNSSASAHLRVNASEI-SGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWR 538
           L+K   +    + S S  L V++  + SG+G          D G  +   RPLQ +KW +
Sbjct: 60  LRKGTSLSQTSSKSTSPQLLVSSDSLPSGNGH---------DAGRVI---RPLQHNKWIK 107

Query: 539 DHDGFLITDAWG 574
               FL+TD WG
Sbjct: 108 KGKMFLVTDIWG 119


>tr|A7P3X8|A7P3X8_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030616001
           PE=4 SV=1
          Length = 486

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
 Frame = +2

Query: 173 AGVFYQSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISA 352
           A +  QSL+ +L+S  G+   C++L+LFQDLLVS+TLSP+D   LFTYA +RL P A+ +
Sbjct: 186 AALEVQSLVRVLESCAGNAP-CYSLVLFQDLLVSTTLSPDDTINLFTYAVLRLAPNALLS 244

Query: 353 TSSGHSLKKVFSRVNSSASAHLRVNASEIS----GSGQQSP 463
            +S  S  +  +  +  A+A +  ++  +S    GS   SP
Sbjct: 245 RASSWSYLRKGNTASQIAAASVMASSGSVSEQFYGSRDTSP 285


>tr|Q7EY72|Q7EY72_ORYSJ Os08g0427300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0032E15.114 PE=2 SV=1
          Length = 492

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 42/123 (34%), Positives = 65/123 (52%)
 Frame = +2

Query: 188 QSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISATSSGH 367
           QSL  +L S  G+  +C +L+LF+DLLVS+TL P+D   L+TYA +RLTP A+ + ++  
Sbjct: 189 QSLTTVLGSCLGNV-MCQSLVLFEDLLVSTTLPPDDTLNLYTYAILRLTPRALLSNATS- 246

Query: 368 SLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWRDHD 547
                +S +    S H    +S  +G+                    RPLQR+K ++  D
Sbjct: 247 -----WSYLRKGTSVHAGPTSSSSNGTAS----------------VERPLQREKLYKGKD 285

Query: 548 GFL 556
           GF+
Sbjct: 286 GFV 288


>tr|A3BTB1|A3BTB1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026283 PE=4 SV=1
          Length = 1397

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 42/123 (34%), Positives = 65/123 (52%)
 Frame = +2

Query: 188 QSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISATSSGH 367
           QSL  +L S  G+  +C +L+LF+DLLVS+TL P+D   L+TYA +RLTP A+ + ++  
Sbjct: 214 QSLTTVLGSCLGNV-MCQSLVLFEDLLVSTTLPPDDTLNLYTYAILRLTPRALLSNATS- 271

Query: 368 SLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWRDHD 547
                +S +    S H    +S  +G+                    RPLQR+K ++  D
Sbjct: 272 -----WSYLRKGTSVHAGPTSSSSNGTAS----------------VERPLQREKLYKGKD 310

Query: 548 GFL 556
           GF+
Sbjct: 311 GFV 313


>tr|B8A2L6|B8A2L6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 492

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 45/126 (35%), Positives = 66/126 (52%)
 Frame = +2

Query: 188 QSLIDLLQSWFGSGRICHTLLLFQDLLVSSTLSPEDAAYLFTYARMRLTPAAISATSSGH 367
           QSL  +L S  G+   C +L+LF+DLLVS+TL P+D   L+TYA +RLTP A+ +     
Sbjct: 189 QSLATVLGSCLGNVT-CQSLVLFEDLLVSTTLPPDDTLNLYTYAVLRLTPRALYS----- 242

Query: 368 SLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEVFTPRPLQRDKWWRDHD 547
                    N+S+ ++LR   S  +G    S     +G+        RPL R+K  +  D
Sbjct: 243 ---------NASSWSYLRKGTSVSAGQTSSSSNGTTAGE--------RPLLREKLSKGKD 285

Query: 548 GFLITD 565
           GF+  D
Sbjct: 286 GFVAAD 291


>tr|Q93W79|Q93W79_ARATH At1g80910/F23A5_21 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 255

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 323 MRLTPAAISA-TSSGHSLKKVFSRVNSSASAHLRVNASEISGSGQQSPLREDSGDQGLEV 499
           MRLT  A+S+ TSS   L+K       S S  +   ++ +   G    L   +G     V
Sbjct: 1   MRLTTNALSSGTSSWSYLRK------GSGSPQISSRSTTVPPLGSGGTLPSGNGSSTGRV 54

Query: 500 FTPRPLQRDKWWRDHDGFLITDAWGV 577
              RPLQ DKW +  DGFL+TD WG+
Sbjct: 55  I--RPLQHDKWSKGKDGFLVTDIWGL 78