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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955854
Clone id TST39A01NGRL0024_D08
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_D08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGCAGCAAGTTGTAGAGGATCTTTCAAAGCAAGCGGGCGTTGCTGTAGAGATTGGATGC
TATTTGCGGATGGAGGTTGGAGAAACGACGGAAAGGGAGGAGTCAATGCAACCTACTGAG
GCAGTGGCACAAGCTGGATGACTTTATGCAGTCATGCTTTTGAATAATCAGATCAAAGTT
TTTGATGCTACCCAAGTCTAACGATCTGAAGAGATAATTAGTAGCCATATATACAGACTG
CAGATAATCAGAGAAGGTTATAGGTAACTCCCAAGAAGAGAGTCTAGAGAGGAGGTAAGC
CCTTCCACTTGAGAAAAATAAGGAGCTTGCTAAAAGTACGTATCCTTGATGGCCAAGGTA
CACAATTTTGATAGATTTCTAGCATGTTTAATTGTAGATGTGTATTTGTTATCAAATAAA
GTTTTACCAAATATTGCTAACTCAAGGCAATGATAACTTTATTTAAAAGGTTGAGGTTGG
AACCTTTAGCGAGTTTCAGGAAACATGATGGCTCTTTTTATCTTTGCCAGCTTTTTGCTC
AAGCTATGAAGATCGTATGCCTAAAACTCCCACCTTTTCTAGCAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q2G8K9
Definition sp|Q2G8K9|EFTS_NOVAD Elongation factor Ts OS=Novosphingobium aromaticivorans (strain DSM 12444)
Align length 46
Score (bit) 38.1
E-value 0.032
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955854|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D08, 5'
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2G8K9|EFTS_NOVAD Elongation factor Ts OS=Novosphingobium aro...    38   0.032
sp|A7ZF27|EFTS_CAMC1 Elongation factor Ts OS=Campylobacter conci...    37   0.055
sp|Q2RU08|EFTS_RHORT Elongation factor Ts OS=Rhodospirillum rubr...    36   0.16 
sp|A7I1L2|EFTS_CAMHC Elongation factor Ts OS=Campylobacter homin...    36   0.16 
sp|Q2W4C4|EFTS_MAGMM Elongation factor Ts OS=Magnetospirillum ma...    35   0.21 
sp|A0RQU7|EFTS_CAMFF Elongation factor Ts OS=Campylobacter fetus...    35   0.27 
sp|A7GWR8|EFTS_CAMC5 Elongation factor Ts OS=Campylobacter curvu...    34   0.47 
sp|Q1GRQ1|EFTS_SPHAL Elongation factor Ts OS=Sphingopyxis alaske...    33   0.80 
sp|A6Q584|EFTS_NITSB Elongation factor Ts OS=Nitratiruptor sp. (...    33   1.0  
sp|Q8YMY3|EFTS_ANASP Elongation factor Ts OS=Anabaena sp. (strai...    33   1.4  
sp|Q98MB3|EFTS_RHILO Elongation factor Ts OS=Rhizobium loti GN=t...    32   1.8  
sp|Q8UFM2|EFTS_AGRT5 Elongation factor Ts OS=Agrobacterium tumef...    32   2.3  
sp|A0L8Q6|EFTS_MAGSM Elongation factor Ts OS=Magnetococcus sp. (...    32   3.0  
sp|Q7VH96|EFTS_HELHP Elongation factor Ts OS=Helicobacter hepati...    32   3.0  
sp|Q3MBF4|EFTS_ANAVT Elongation factor Ts OS=Anabaena variabilis...    32   3.0  
sp|Q8PDD7|OPGB_XANCP Phosphoglycerol transferase I OS=Xanthomona...    31   3.9  
sp|Q3M785|MTNA_ANAVT Methylthioribose-1-phosphate isomerase OS=A...    31   5.2  
sp|Q3BYI6|OPGB_XANC5 Phosphoglycerol transferase I OS=Xanthomona...    30   6.7  
sp|Q8PQA7|OPGB_XANAC Phosphoglycerol transferase I OS=Xanthomona...    30   6.7  
sp|Q7MAK1|EFTS_WOLSU Elongation factor Ts OS=Wolinella succinoge...    30   6.7  
sp|A5V3G3|EFTS_SPHWW Elongation factor Ts OS=Sphingomonas wittic...    30   6.7  
sp|A4J5Z2|EFTS_DESRM Elongation factor Ts OS=Desulfotomaculum re...    30   6.7  
sp|Q6G5C8|EFTS_BARHE Elongation factor Ts OS=Bartonella henselae...    30   6.7  
sp|Q3AQC6|SYFB_CHLCH Phenylalanyl-tRNA synthetase beta chain OS=...    30   8.8  
sp|A6Q716|EFTS_SULNB Elongation factor Ts OS=Sulfurovum sp. (str...    30   8.8  
sp|A6U8K3|EFTS_SINMW Elongation factor Ts OS=Sinorhizobium medic...    30   8.8  
sp|Q92Q54|EFTS_RHIME Elongation factor Ts OS=Rhizobium meliloti ...    30   8.8  
sp|Q3A396|EFTS_PELCD Elongation factor Ts OS=Pelobacter carbinol...    30   8.8  

>sp|Q2G8K9|EFTS_NOVAD Elongation factor Ts OS=Novosphingobium
           aromaticivorans (strain DSM 12444) GN=tsf PE=3 SV=1
          Length = 308

 Score = 38.1 bits (87), Expect = 0.032
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           +QQVV+   K+AG  + +  Y+R ++GE  E+EE+    E  A AG
Sbjct: 261 IQQVVDAAGKEAGAKIVLKDYVRFQLGEGIEKEETDFAAEVAAAAG 306


>sp|A7ZF27|EFTS_CAMC1 Elongation factor Ts OS=Campylobacter concisus
           (strain 13826) GN=tsf PE=3 SV=2
          Length = 354

 Score = 37.4 bits (85), Expect = 0.055
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           ++QV+E+ SK+ G  +EI  Y+R E+GE  E++      E  AQ G
Sbjct: 309 IEQVIEEKSKELGGKIEIVKYVRFELGEGLEKKVDDFAAEVAAQIG 354


>sp|Q2RU08|EFTS_RHORT Elongation factor Ts OS=Rhodospirillum rubrum
           (strain ATCC 11170 / NCIB 8255) GN=tsf PE=3 SV=1
          Length = 309

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 132
           + +V+E   K  G  +E+G ++R ++GE  E+EES    E  AQ
Sbjct: 263 IAKVLEKAGKDLGAPIELGGFVRFQLGEGIEKEESDFAAEVAAQ 306


>sp|A7I1L2|EFTS_CAMHC Elongation factor Ts OS=Campylobacter hominis
           (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)
           GN=tsf PE=3 SV=1
          Length = 352

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           ++QV+++ SK+ G  + I  Y+R EVGE  E++      E  AQ G
Sbjct: 307 IEQVIDEKSKEFGGKITITNYIRYEVGEGLEKKSEDFAAEVAAQIG 352


>sp|Q2W4C4|EFTS_MAGMM Elongation factor Ts OS=Magnetospirillum
           magneticum (strain AMB-1 / ATCC 700264) GN=tsf PE=3 SV=1
          Length = 312

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           + +V+E+L K+ G  V++  + R  +GE  E+E S    E  AQAG
Sbjct: 262 ISKVLENLGKEIGAPVKLAGFARFALGEGIEKEVSDFAAEVAAQAG 307


>sp|A0RQU7|EFTS_CAMFF Elongation factor Ts OS=Campylobacter fetus
           subsp. fetus (strain 82-40) GN=tsf PE=3 SV=1
          Length = 354

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 132
           V+Q + D +K+ G  VEI  Y+R EVGE  E++      E  AQ
Sbjct: 309 VEQAIADEAKKVGGKVEIVSYVRFEVGEGLEKKSEDFAAEVAAQ 352


>sp|A7GWR8|EFTS_CAMC5 Elongation factor Ts OS=Campylobacter curvus
           (strain 525.92) GN=tsf PE=3 SV=1
          Length = 354

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           ++QV+ + SK+ G  +EI  Y+R E+GE  E++      E  AQ G
Sbjct: 309 IEQVLAEKSKELGGKIEIVKYVRFELGEGLEKKVDDFAAEVAAQIG 354


>sp|Q1GRQ1|EFTS_SPHAL Elongation factor Ts OS=Sphingopyxis
           alaskensis GN=tsf PE=3 SV=1
          Length = 308

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           V +VV    K  G A+ +  ++R ++GE  E+EES    E  A AG
Sbjct: 262 VAEVVAAAGKDVGAAITLKGFVRFQLGEGIEKEESDFAAEVAAAAG 307


>sp|A6Q584|EFTS_NITSB Elongation factor Ts OS=Nitratiruptor sp.
           (strain SB155-2) GN=tsf PE=3 SV=1
          Length = 305

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 132
           V+QV+++ +K AG + +I  ++R E+GE  E++E     E  AQ
Sbjct: 260 VKQVIDEAAKAAGGSAKIIGFIRYELGEGIEKKEEDFAAEVAAQ 303


>sp|Q8YMY3|EFTS_ANASP Elongation factor Ts OS=Anabaena sp. (strain
           PCC 7120) GN=tsf PE=3 SV=1
          Length = 313

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           V+ +V+ +  +AG  VE+  ++R  +GE  E++ES    E  AQ G
Sbjct: 266 VEDLVKQVKAKAGEEVEVSRFVRYILGEGIEKQESNFAEEVAAQMG 311
tr_hit_id Q9SWW0
Definition tr|Q9SWW0|Q9SWW0_SOLLC Elongation factor Ts OS=Solanum lycopersicum
Align length 45
Score (bit) 40.4
E-value 0.073
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955854|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D08, 5'
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SWW0|Q9SWW0_SOLLC Elongation factor Ts OS=Solanum lycopersi...    40   0.073
tr|B4FHF0|B4FHF0_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.096
tr|A4TV02|A4TV02_9PROT Elongation factor Ts OS=Magnetospirillum ...    37   1.1  
tr|Q0G6D4|Q0G6D4_9RHIZ Elongation factor Ts OS=Fulvimarina pelag...    36   1.4  
tr|A5PE16|A5PE16_9SPHN Elongation factor Ts OS=Erythrobacter sp....    36   1.4  
tr|A7PF75|A7PF75_VITVI Elongation factor Ts OS=Vitis vinifera GN...    36   1.8  
tr|A0NT62|A0NT62_9RHOB Elongation factor Ts OS=Labrenzia aggrega...    35   3.1  
tr|Q9T015|Q9T015_ARATH Elongation factor Ts OS=Arabidopsis thali...    35   4.0  
tr|Q5XF75|Q5XF75_ARATH Elongation factor Ts OS=Arabidopsis thali...    35   4.0  
tr|O82505|O82505_ARATH Elongation factor Ts OS=Arabidopsis thali...    35   4.0  
tr|A7Q9U5|A7Q9U5_VITVI Chromosome chr8 scaffold_68, whole genome...    34   5.2  
tr|A5AXR2|A5AXR2_VITVI Putative uncharacterized protein OS=Vitis...    34   5.2  
tr|B6QXN5|B6QXN5_9RHOB Translation elongation factor Ts OS=Pseud...    33   9.0  
tr|A8TUK8|A8TUK8_9PROT Elongation factor Ts OS=alpha proteobacte...    33   9.0  

>tr|Q9SWW0|Q9SWW0_SOLLC Elongation factor Ts OS=Solanum lycopersicum
           GN=ER49 PE=2 SV=1
          Length = 391

 Score = 40.4 bits (93), Expect = 0.073
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQA 135
           V+ ++ +LSK  G  V+IG +LRMEVGE  +R E+   +E +A A
Sbjct: 346 VKTLLSNLSKDVGSPVKIGSFLRMEVGEGLQRLEASNESEPLANA 390


>tr|B4FHF0|B4FHF0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 379

 Score = 40.0 bits (92), Expect = 0.096
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQA 135
           ++ V+ DLSK+ G  V IG ++RMEVGE  ER E+    E    A
Sbjct: 334 IKTVLNDLSKEVGSKVTIGNFIRMEVGEGIERTEAADGLEVAGGA 378


>tr|A4TV02|A4TV02_9PROT Elongation factor Ts OS=Magnetospirillum
           gryphiswaldense GN=MGR_0134 PE=3 SV=1
          Length = 308

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           + +VVE+L+K+ G  V++  + R  +GE  E+EE     E  AQ G
Sbjct: 262 ISKVVENLAKELGAPVKLTAFARFALGEGIEKEEKDFAAEVAAQLG 307


>tr|Q0G6D4|Q0G6D4_9RHIZ Elongation factor Ts OS=Fulvimarina pelagi
           HTCC2506 GN=FP2506_08061 PE=3 SV=1
          Length = 323

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           V++ +E+ +K AG   +I  Y+R  +GE  EREES    E  A AG
Sbjct: 277 VEKALEEAAKDAGGKAKITGYVRFALGEGIEREESDFAAEVAAAAG 322


>tr|A5PE16|A5PE16_9SPHN Elongation factor Ts OS=Erythrobacter sp.
           SD-21 GN=tsf PE=3 SV=1
          Length = 308

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           + QV+E  +K  G  VE+  Y+R ++GE  E+EES    E  A  G
Sbjct: 262 IAQVLEAAAKDVGAKVELVDYVRFQLGEGIEKEESDFAAEVAAAVG 307


>tr|A7PF75|A7PF75_VITVI Elongation factor Ts OS=Vitis vinifera
           GN=GSVIVT00016937001 PE=3 SV=1
          Length = 364

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTER 96
           V+ V+ +LSK+ G +V+IG + RMEVGE  +R
Sbjct: 333 VKTVLNNLSKEVGSSVKIGSFFRMEVGEGIQR 364


>tr|A0NT62|A0NT62_9RHOB Elongation factor Ts OS=Labrenzia aggregata
           IAM 12614 GN=tsf PE=3 SV=1
          Length = 305

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQAG 138
           V+Q VE L+K+ G  V++  ++R  +GE  E+EE     E  A  G
Sbjct: 259 VEQAVEALAKEIGAEVKLTGFVRFAIGEGIEKEEQDFAAEVAAATG 304


>tr|Q9T015|Q9T015_ARATH Elongation factor Ts OS=Arabidopsis thaliana
           GN=AT4g11120 PE=2 SV=1
          Length = 415

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 132
           ++ +V++LSK+ G  V++  +LR+EVGE  ER E+    E VAQ
Sbjct: 372 IKTLVDNLSKEVGSPVKVTDFLRVEVGEGIERLEASD--EPVAQ 413


>tr|Q5XF75|Q5XF75_ARATH Elongation factor Ts OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 395

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 132
           ++ +V++LSK+ G  V++  +LR+EVGE  ER E+    E VAQ
Sbjct: 352 IKTLVDNLSKEVGSPVKVTDFLRVEVGEGIERLEASD--EPVAQ 393


>tr|O82505|O82505_ARATH Elongation factor Ts OS=Arabidopsis thaliana
           GN=F2P3.12 PE=3 SV=1
          Length = 398

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +1

Query: 1   VQQVVEDLSKQAGVAVEIGCYLRMEVGETTEREESMQPTEAVAQ 132
           ++ +V++LSK+ G  V++  +LR+EVGE  ER E+    E VAQ
Sbjct: 355 IKTLVDNLSKEVGSPVKVTDFLRVEVGEGIERLEASD--EPVAQ 396