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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955860
Clone id TST39A01NGRL0024_D14
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_D14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGTTGGGAAGAAATTCACATCTCCTTCTTCTTCTTCCAGGTTCAAAGGGGAAGGCCACAA
GTTGGGCAGTGGGCAGGAAAGCTCGCAACAGCCAGCAAAAGCGCAGCCCCCTGCGCAGCA
GCAAGCAGACTGGCGGAAGCTTCAACAAGAACGTTGGGGGAGAGAGCGCTCACCTCACCC
AACACCTCGCCAGGATGGATCTAACGCCTCTACATCTCAACCTCAGACTTCCAATGTGCA
CAATAGCAGTCCTAGCATACCCAGCTCGGTGGGCTCTTCTAGCAAACATCCTAACGGATC
CTCCGTTGATGGTCTCACAGCTGTAAAGGTTGGTCTTCCAGACGGCGCTGAAGATCTACA
AACGGGCGATGGATCTGAACAGCCCATTGGGGCCCTTGAAGTGGGGAATCTTGATCAGGT
GAGCAATCAAGAGTGCAAGGATGCTGCGAAGTTATCCAAAGTAGCCGCTTTGTGCTCACA
TGGTGATCATGAGGGAATTGTGAGCTCTTCAGATTTGGTTAGGGTGGCCTCACATGATTC
ACATGATGCTCAAAGTACAAGCATA
■■Homology search results ■■ -
sp_hit_id Q5ZMJ9
Definition sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus
Align length 44
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955860|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D14, 5'
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ...    32   1.7  
sp|O67870|PRMA_AQUAE Ribosomal protein L11 methyltransferase OS=...    32   2.2  
sp|P58795|WRBA_AGRT5 Flavoprotein wrbA OS=Agrobacterium tumefaci...    32   2.9  
sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF...    31   3.7  
sp|Q8SW85|Y301_ENCCU UPF0328 protein ECU03_0010 OS=Encephalitozo...    31   4.8  
sp|Q8R066|C1QT4_MOUSE Complement C1q tumor necrosis factor-relat...    31   4.8  
sp|Q6ULP2|AFTIN_HUMAN Aftiphilin OS=Homo sapiens GN=AFTPH PE=1 SV=2    31   4.9  
sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 ...    30   6.3  
sp|Q61817|CREB3_MOUSE Cyclic AMP-responsive element-binding prot...    30   6.3  

>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1
           OS=Gallus gallus GN=SRRM1 PE=2 SV=1
          Length = 888

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 42  SKGKATSWAVGRKARNSQQKRSPLRSSKQTGGSFNKNVGGESAH 173
           S+  + +W+  +KA++  Q  SP R+S Q GG   K    +  H
Sbjct: 765 SRSPSANWSPAKKAKSPTQSPSPARNSDQEGGGKKKKKKKDKKH 808


>sp|O67870|PRMA_AQUAE Ribosomal protein L11 methyltransferase
           OS=Aquifex aeolicus GN=prmA PE=3 SV=1
          Length = 245

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
 Frame = +2

Query: 314 LTAVKVGLPDGAEDLQTGDGS------EQPIGALEVG--NLDQVSNQECKDAAKLSKVAA 469
           + A+K  L +G   L  G GS         +GA  V   ++D+ +  EC++ A+L+KV  
Sbjct: 105 IKALKKYLKEGMTVLDVGTGSGILAIVSALLGAKRVVGIDIDEKAVNECRENAELNKVKV 164

Query: 470 LCSHGDHEGIVSSSDLVRVASHDSH 544
            C   + + +  S DLV VA+ + H
Sbjct: 165 ECFRAEPKDVNESFDLV-VANLEIH 188


>sp|P58795|WRBA_AGRT5 Flavoprotein wrbA OS=Agrobacterium tumefaciens
           (strain C58 / ATCC 33970) GN=wrbA PE=3 SV=1
          Length = 199

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +2

Query: 311 GLTAVKVGLPDGAEDLQTGDGSEQPIGALEVGNLDQVSNQECKDAAKLS 457
           G+  +K G P GA  +  GDGS QP  A+E+           K AAKLS
Sbjct: 151 GVDEIKGGSPYGASTITDGDGSRQP-SAIELDAARYQGAHVAKLAAKLS 198


>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2
           OS=Mus musculus GN=Sh3rf2 PE=1 SV=2
          Length = 735

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 3   LGRNSHLLLLLPGSKGKATSWAVGRKARNSQQKRSPLRSSKQTGGSFNKNVGGESAH 173
           L R  HL L+   S+GKAT+ +  RK+  S++K S   S      + N+ V     H
Sbjct: 264 LSRTRHLSLMSSPSRGKATNTSSLRKSPGSRRKGSGQFSMTTALNTLNRTVHSPEGH 320


>sp|Q8SW85|Y301_ENCCU UPF0328 protein ECU03_0010 OS=Encephalitozoon
           cuniculi GN=ECU03_0010 PE=3 SV=1
          Length = 276

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -3

Query: 551 EHHVNHVRPP*PNLKSSQFPHDHHVSTKRLLWITSQHPCTLDCSPDQDSPLQGPQWAVQI 372
           E +  H     P +     PH    +T  LL     +P +  C   +DSP   PQ    +
Sbjct: 118 EPNTKHTETEPPIISHCPPPHPGPTATPNLL--PCPNPTSSFCQNTRDSPSLPPQRPNMV 175

Query: 371 HRPFVDLQRR 342
           H P   LQRR
Sbjct: 176 HIPETPLQRR 185


>sp|Q8R066|C1QT4_MOUSE Complement C1q tumor necrosis factor-related
           protein 4 OS=Mus musculus GN=C1qtnf4 PE=2 SV=1
          Length = 326

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
 Frame = +3

Query: 21  LLLLLPGSKGKATSWAVGRKARNSQQKRS--------PLRSSKQTGGSFNK---NVGGE 164
           +LLLL G  G A  WA+G     S + RS        PL  + +   +F+K   N+GG+
Sbjct: 1   MLLLLLGFLGPAACWALGPAGPGSSELRSAFSAARTTPLEGTSEMAVTFDKVYVNIGGD 59


>sp|Q6ULP2|AFTIN_HUMAN Aftiphilin OS=Homo sapiens GN=AFTPH PE=1 SV=2
          Length = 937

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +2

Query: 311 GLTAVKVGLPDGAED--LQTGDGSEQPIGALEVGNLDQVSNQECKDAAKLSKVAALCSHG 484
           G +  K GLP   +D  LQ+G  S+         N + +  ++CK   KL  + + C+H 
Sbjct: 309 GFSVEKQGLPTLQQDEFLQSGVQSKAWSLVDSADNSEAIRREQCKTEEKLDLLTSKCAHL 368

Query: 485 DHEGIVSSSDLVRVASHDS 541
             + + +S D V     +S
Sbjct: 369 CMDSVKTSDDEVGSPKEES 387


>sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2
           OS=Rattus norvegicus GN=Sh3rf2 PE=2 SV=1
          Length = 735

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 3   LGRNSHLLLLLPGSKGKATSWAVGRKARNSQQKRSPLRSSKQTGGSFNKNVGGESAH 173
           L R  HL L+   S+GKAT+ +  RK+  S++K S   +      + N+ V     H
Sbjct: 265 LSRTKHLSLMSSPSRGKATNTSTLRKSPGSRRKGSGQFAMTTALNTLNRMVHSPEGH 321


>sp|Q61817|CREB3_MOUSE Cyclic AMP-responsive element-binding protein
           3 OS=Mus musculus GN=Creb3 PE=2 SV=2
          Length = 404

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 524 P*PNLKSSQFP----HDHHVSTKRLLWITSQHPCTLDCSPDQDSPLQGPQWAVQIHRPFV 357
           P P+  SS+ P    H    S++ +  ++S   C L  +P  + PL  P W +     F 
Sbjct: 312 PKPSALSSELPMDSTHQSLDSSEHMFLVSSNFSCVLYHAPQAEQPLHWPLWDLSSEMLFS 371

Query: 356 D 354
           D
Sbjct: 372 D 372
tr_hit_id B4WT07
Definition tr|B4WT07|B4WT07_9SYNE Saccharopine dehydrogenase OS=Synechococcus sp. PCC 7335
Align length 76
Score (bit) 36.2
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955860|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D14, 5'
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4WT07|B4WT07_9SYNE Saccharopine dehydrogenase OS=Synechococc...    36   1.3  
tr|Q29GN0|Q29GN0_DROPS GA15492 OS=Drosophila pseudoobscura pseud...    35   2.2  
tr|Q09CD1|Q09CD1_STIAU Tetratricopeptide repeat domain protein O...    35   3.7  
tr|Q9ZU93|Q9ZU93_ARATH Expressed protein (CDC48-interacting UBX-...    35   3.7  
tr|Q8LGE5|Q8LGE5_ARATH Putative uncharacterized protein OS=Arabi...    35   3.7  
tr|Q7S5S4|Q7S5S4_NEUCR Putative uncharacterized protein OS=Neuro...    33   8.2  
tr|A5ZAF3|A5ZAF3_9FIRM Putative uncharacterized protein OS=Eubac...    33   8.3  

>tr|B4WT07|B4WT07_9SYNE Saccharopine dehydrogenase OS=Synechococcus
           sp. PCC 7335 GN=S7335_54 PE=4 SV=1
          Length = 431

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 102 RSPLRSSKQTGGSFNKNVGGESAHLTQHLARMDLTPLHLNLRLPMCTIAVLAYPARWALL 281
           R  LRS+   G  + K    E A LT   A   LT   LNL + +  +A+L  P RW L 
Sbjct: 272 RIVLRSNALLGYPYGKGFQYEEAVLTGPKATGWLTAQGLNLAMGVLAVAMLFSPTRWLLN 331

Query: 282 ANILTDP---PLMVSQ 320
             I+  P   P  VSQ
Sbjct: 332 NTIIPQPGEGPSQVSQ 347


>tr|Q29GN0|Q29GN0_DROPS GA15492 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA15492 PE=4 SV=2
          Length = 925

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -2

Query: 405 PTSRAPMGCSDPSPVCRSS---APSGRP----TFTAVRPSTEDPLGC 286
           PT+  P GC++ SP C ++    P+  P    T T   P+TE P GC
Sbjct: 35  PTTEPPCGCTETSPPCETTTPECPTTEPPTCETTTTECPTTEPPCGC 81



 Score = 35.0 bits (79), Expect = 2.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -2

Query: 405 PTSRAPMGCSDPSPVCRSS---APSGRP----TFTAVRPSTEDPLGC 286
           PT+  P GC++ SP C ++    P+  P    T T   P+TE P GC
Sbjct: 73  PTTEPPCGCTETSPPCETTTTECPTTEPPTCETTTPECPTTEPPCGC 119



 Score = 34.7 bits (78), Expect = 3.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
 Frame = -2

Query: 405 PTSRAPMGCSDPSPVCRSSA-------PSGRPTFTAVRPSTEDPLGC 286
           PT+  P GC++ SP C ++        P    T T   P+TE P GC
Sbjct: 111 PTTEPPCGCTETSPPCETTTTECATTEPPTCETSTTECPTTEPPCGC 157


>tr|Q09CD1|Q09CD1_STIAU Tetratricopeptide repeat domain protein
            OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_3707 PE=4 SV=1
          Length = 1258

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
 Frame = +3

Query: 39   GSKGKATSWA---VGRKARNSQ---------QKRSPLRSSKQTGGSFNKNVGGESAHLTQ 182
            GS+  A S+A   + R ARNS+         +K++ L + K    +  K + G    L Q
Sbjct: 877  GSETTAASYADNFLDRAARNSEVEAFARRVVEKKTGLEAVKALHAAVMKQIPGRDTGLAQ 936

Query: 183  HLARMDLTPLHLNLRLPMCTIAVLAYPARWALLANILTDP 302
              A          L L   ++ VL  PAR A++    TDP
Sbjct: 937  SAATTVAQDRGSRLMLLKASLDVLGIPARLAMVRTFYTDP 976


>tr|Q9ZU93|Q9ZU93_ARATH Expressed protein (CDC48-interacting
           UBX-domain protein) (Putative uncharacterized protein
           At2g01650) (Putative uncharacterized protein
           At2g01650/T8O11.18) OS=Arabidopsis thaliana GN=PUX2 PE=2
           SV=2
          Length = 458

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +2

Query: 8   KKFTSPSSSSRFKGEGHKLGSGQESSXXXXXXXXXXXXXXDWRKLQQERWGRERSPHPTP 187
           KK    SSS +FKG+G  LGS   SS                    Q R+   ++P+PTP
Sbjct: 13  KKVNLSSSSGKFKGQGRVLGSSSSSSAPPVNPI-------------QNRFNSSQAPNPTP 59

Query: 188 R 190
           R
Sbjct: 60  R 60


>tr|Q8LGE5|Q8LGE5_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 458

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +2

Query: 8   KKFTSPSSSSRFKGEGHKLGSGQESSXXXXXXXXXXXXXXDWRKLQQERWGRERSPHPTP 187
           KK    SSS +FKG+G  LGS   SS                    Q R+   ++P+PTP
Sbjct: 13  KKVNLSSSSGKFKGQGRVLGSSSSSSAPPVNPI-------------QNRFNSSQAPNPTP 59

Query: 188 R 190
           R
Sbjct: 60  R 60


>tr|Q7S5S4|Q7S5S4_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU05634 PE=4 SV=2
          Length = 1750

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = +3

Query: 87  NSQQKRSPLRSSKQTGGSFNKNVGG----ESAHL----TQHLARMDLTPLHLNLRLPMCT 242
           NS ++ +PL ++ +TG S   N  G    ESA       Q    MD+TP  LN R  +C 
Sbjct: 599 NSSRRDTPLSATSETGSSLFSNARGLLTTESASAQAAEKQRQQSMDITPATLNTRNLLCL 658

Query: 243 IAVL 254
            A+L
Sbjct: 659 RALL 662


>tr|A5ZAF3|A5ZAF3_9FIRM Putative uncharacterized protein
           OS=Eubacterium ventriosum ATCC 27560 GN=EUBVEN_02700
           PE=3 SV=1
          Length = 468

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 21/71 (29%), Positives = 27/71 (38%)
 Frame = +2

Query: 314 LTAVKVGLPDGAEDLQTGDGSEQPIGALEVGNLDQVSNQECKDAAKLSKVAALCSHGDHE 493
           + A   GL  G E + TG G   P+G   +G L  V      +  KL      C H D  
Sbjct: 56  MLAASEGLHKGMEVVATGSGISVPVGEKTLGRLFNVLGDTLDNGEKLDGEQHWCIHRDPP 115

Query: 494 GIVSSSDLVRV 526
                S +V V
Sbjct: 116 SFEDQSPVVEV 126