| DK955862 |
| Clone id |
TST39A01NGRL0024_D17 |
| Library |
TST39 |
| Length |
612 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_D17. 5' end sequence. |
| Accession |
DK955862 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1608Contig1 |
| Sequence |
CACAAACACGCCCACGCGCAGCTCGCCATAGCCAAGTTGTCTCCAAGCTCGCACTCACAT ACCTGCAGACAAGGAGAAAATCCCCACCTCGGTGCCCTCGAAACCTCTGGAGGCGGATCT TCCCTGGATCTAGCTGTGAGAAACCGTCAATCAGAAACAATTTTCTGCAATTATTTATTC CCGGCTCGGCTACAAGGAGCAGTTGATTCCCCTGCATTATAAAACGGGCTGGCTTAGCTA AGCTCAGACATGGAGCCTGCAGCGTTCTCCGTCAACAGGAGAGGAGAGCATCTTGTCAGA TACCGCCCAAAGAGGAGCCCTCATCAGATCGCAAGTTGTGTGGAAGAGGTGACTGGAAGC AGGCACATTGATGCAGACTCTAATGGCAGCTCTGATACAGTATCAAACCTTCATCACTTC CTACAGCACACAACCCCTCGGGTTCCATCTCAATCTCTTTCAAAGAGTCGTCTCCGAGGT CTGTCTGCTCAGGGTTCGATGGATTGTGAGAAAAATTTCTTCTCTCTCAATGATTTATGG GACAGTTTCGATGAGTGGAGTGCATATGGGGCAGGTGTGCCAATTCTTCTGAATAGCAGG GAAACTGTTATG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q6AI39 |
| Definition |
sp|Q6AI39|K0240_HUMAN Uncharacterized protein KIAA0240 OS=Homo sapiens |
| Align length |
65 |
| Score (bit) |
34.3 |
| E-value |
0.52 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RPR0 |
| Definition |
tr|A9RPR0|A9RPR0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
110 |
| Score (bit) |
84.7 |
| E-value |
4.0e-15 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955862|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_D17, 5' (612 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RPR0|A9RPR0_PHYPA Predicted protein OS=Physcomitrella paten... 85 4e-15 tr|A9RSK0|A9RSK0_PHYPA Predicted protein OS=Physcomitrella paten... 84 7e-15 tr|Q6YSZ2|Q6YSZ2_ORYSJ Os07g0246600 protein OS=Oryza sativa subs... 78 5e-13 tr|A7PGX7|A7PGX7_VITVI Chromosome chr17 scaffold_16, whole genom... 75 2e-12 tr|A9RZ13|A9RZ13_PHYPA Predicted protein OS=Physcomitrella paten... 75 4e-12 tr|A9TPL8|A9TPL8_PHYPA Predicted protein OS=Physcomitrella paten... 74 5e-12 tr|Q9ZT70|Q9ZT70_ARATH Putative uncharacterized protein AT4g0342... 73 2e-11 tr|Q8S9K9|Q8S9K9_ARATH AT4g03420/F9H3_4 OS=Arabidopsis thaliana ... 73 2e-11 tr|A7PXD4|A7PXD4_VITVI Chromosome chr12 scaffold_36, whole genom... 71 4e-11 tr|Q9ZU41|Q9ZU41_ARATH Predicted by genscan and genefinder (Puta... 71 6e-11 tr|Q3E6X2|Q3E6X2_ARATH Uncharacterized protein At2g01260.2 OS=Ar... 71 6e-11 tr|Q2V4B5|Q2V4B5_ARATH Uncharacterized protein At2g01260.3 OS=Ar... 71 6e-11 tr|A7Q8K6|A7Q8K6_VITVI Chromosome chr5 scaffold_64, whole genome... 71 6e-11 tr|A9P9W8|A9P9W8_POPTR Putative uncharacterized protein OS=Popul... 69 2e-10 tr|Q9M0J2|Q9M0J2_ARATH Putative uncharacterized protein AT4g2815... 69 2e-10 tr|Q8GUN3|Q8GUN3_ARATH Putative uncharacterized protein At4g2815... 69 2e-10 tr|Q8L9D1|Q8L9D1_ARATH Putative uncharacterized protein OS=Arabi... 69 3e-10 tr|Q850Z6|Q850Z6_ORYSJ Putative uncharacterized protein OSJNBb00... 69 3e-10 tr|Q7Y149|Q7Y149_ORYSJ Putative uncharacterized protein OSJNBa00... 69 3e-10 tr|Q10B37|Q10B37_ORYSJ Os03g0831300 protein OS=Oryza sativa subs... 69 3e-10 tr|B8AMR1|B8AMR1_ORYSI Putative uncharacterized protein OS=Oryza... 69 3e-10 tr|B4FEX2|B4FEX2_MAIZE Putative uncharacterized protein OS=Zea m... 68 4e-10 tr|Q940I8|Q940I8_ARATH Putative uncharacterized protein Z97340.1... 67 8e-10 tr|A7Q9Q2|A7Q9Q2_VITVI Chromosome chr5 scaffold_67, whole genome... 67 8e-10 tr|A7P3D3|A7P3D3_VITVI Chromosome chr1 scaffold_5, whole genome ... 67 8e-10 tr|A5BKM4|A5BKM4_VITVI Putative uncharacterized protein OS=Vitis... 67 8e-10 tr|Q3E9V1|Q3E9V1_ARATH Uncharacterized protein At4g28150.2 (Puta... 65 4e-09 tr|Q9FJ18|Q9FJ18_ARATH Gb|AAF31026.1 OS=Arabidopsis thaliana PE=... 64 5e-09 tr|Q8VZK6|Q8VZK6_ARATH Putative uncharacterized protein At5g4922... 64 5e-09 tr|Q9LR63|Q9LR63_ARATH F21B7.22 OS=Arabidopsis thaliana PE=4 SV=1 64 7e-09
>tr|A9RPR0|A9RPR0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_117738 PE=4 SV=1 Length = 400
Score = 84.7 bits (208), Expect = 4e-15 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 9/110 (8%) Frame = +1
Query: 310 KRSPHQIASC-------VEEVTGSRHID--ADSNGSSDTVSNLHHFLQHTTPRVPSQSLS 462 KR+ + A C +VTG ++ A S+G S +SNL FL+ TTP V +L Sbjct: 56 KRNGQRAAKCSNHGVGGTPDVTGRINVPSVACSSGRSFPLSNLDRFLEETTPCVKVLTLP 115
Query: 463 KSRLRGLSAQGSMDCEKNFFSLNDLWDSFDEWSAYGAGVPILLNSRETVM 612 KSRLR S + E +F+L DLWDSFDEWSAYGAGVP+ LN E+V+ Sbjct: 116 KSRLRDPSNRWFNPEETPYFNLGDLWDSFDEWSAYGAGVPLTLNGDESVV 165
>tr|A9RSK0|A9RSK0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177744 PE=4 SV=1 Length = 341
Score = 84.0 bits (206), Expect = 7e-15 Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 1/79 (1%) Frame = +1
Query: 379 SNGSSDTVSNLHHFLQHTTPRVPSQSLSKSRLRGLSAQGSMDCEKN-FFSLNDLWDSFDE 555 S+G SN+ FL+ TTPRV +Q+L KS +R S + ++ EK +F+L DLWDSFDE Sbjct: 13 SSGHFSCPSNIDRFLEVTTPRVKTQNLPKSYVRDSSQKRCLNPEKTAYFNLRDLWDSFDE 72
Query: 556 WSAYGAGVPILLNSRETVM 612 WSAYGAGVP++LN E+V+ Sbjct: 73 WSAYGAGVPLVLNGDESVV 91
>tr|Q6YSZ2|Q6YSZ2_ORYSJ Os07g0246600 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0003K21.26 PE=4 SV=1 Length = 455
Score = 77.8 bits (190), Expect = 5e-13 Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 1/115 (0%) Frame = +1
Query: 271 VNRRGEHLVRYRPKRSPHQIASCVEEVTGSRHIDADSNGSSDTVS-NLHHFLQHTTPRVP 447 V RR + +V+ +P SP ++ V+ + + + + + NL FL TTP VP Sbjct: 105 VERRVDAVVQSKPSVSPLPSSADVKRPPAAESAPEPARAAEEEAAGNLERFLSSTTPSVP 164
Query: 448 SQSLSKSRLRGLSAQGSMDCEKNFFSLNDLWDSFDEWSAYGAGVPILLNSRETVM 612 Q L K+ +RG + +M+ +F L DLW++F+EWS YGAGVP++LN +++V+ Sbjct: 165 VQYLPKTSMRGWRSGDAMNSSP-YFCLGDLWEAFNEWSFYGAGVPVVLNGKDSVI 218
>tr|A7PGX7|A7PGX7_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017727001 PE=4 SV=1 Length = 370
Score = 75.5 bits (184), Expect = 2e-12 Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 1/79 (1%) Frame = +1
Query: 379 SNGSSDTVSNLHHFLQHTTPRVPSQSLSKSRLRGLSAQGSMDCE-KNFFSLNDLWDSFDE 555 S+ S SNL FL+ TTP VP+Q SK+ +RGL + D E +++F+L DLW+SF E Sbjct: 72 SSEPSTAPSNLDRFLESTTPSVPAQYFSKTTMRGLR---TCDIEFQHYFTLGDLWESFME 128
Query: 556 WSAYGAGVPILLNSRETVM 612 WSAYGAGVP++L+ + V+ Sbjct: 129 WSAYGAGVPLVLDGSDPVV 147
>tr|A9RZ13|A9RZ13_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_72334 PE=4 SV=1 Length = 276
Score = 74.7 bits (182), Expect = 4e-12 Identities = 41/80 (51%), Positives = 52/80 (65%) Frame = +1
Query: 373 ADSNGSSDTVSNLHHFLQHTTPRVPSQSLSKSRLRGLSAQGSMDCEKNFFSLNDLWDSFD 552 A S+G S SNL FL+ TTPRV +Q L K + + E +F+L DLWDSFD Sbjct: 7 ASSSGRSYAPSNLDRFLEVTTPRVRTQYLPK--------RCANPEETLYFNLGDLWDSFD 58
Query: 553 EWSAYGAGVPILLNSRETVM 612 EWSAYGAGVP++LN E+V+ Sbjct: 59 EWSAYGAGVPLVLNGDESVV 78
>tr|A9TPL8|A9TPL8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_148691 PE=4 SV=1 Length = 337
Score = 74.3 bits (181), Expect = 5e-12 Identities = 37/80 (46%), Positives = 53/80 (66%) Frame = +1
Query: 373 ADSNGSSDTVSNLHHFLQHTTPRVPSQSLSKSRLRGLSAQGSMDCEKNFFSLNDLWDSFD 552 A S+G S + SNL FL+ T+PRV +Q+L K + + + + +F+L DLWDSFD Sbjct: 24 ACSSGQSSSQSNLDRFLEETSPRVKTQTLPKVVISRAMRRCNPEVTP-YFNLRDLWDSFD 82
Query: 553 EWSAYGAGVPILLNSRETVM 612 EWSAYG GVP++LN E+ + Sbjct: 83 EWSAYGCGVPLMLNGDESAV 102
>tr|Q9ZT70|Q9ZT70_ARATH Putative uncharacterized protein AT4g03420 OS=Arabidopsis thaliana GN=F9H3.4 PE=4 SV=1 Length = 358
Score = 72.8 bits (177), Expect = 2e-11 Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 2/72 (2%) Frame = +1
Query: 403 SNLHHFLQHTTPRVPSQSLSKSRLRGLSA-QGSMDCEK-NFFSLNDLWDSFDEWSAYGAG 576 SNL FL TTP VP QSLSK+ +R L+ + +K FF L+DLWD +DEWSAYGAG Sbjct: 7 SNLDRFLHCTTPVVPPQSLSKAEIRSLNRIWHPWERQKVEFFRLSDLWDCYDEWSAYGAG 66
Query: 577 VPILLNSRETVM 612 VPI L++ E+++ Sbjct: 67 VPIRLSNGESLV 78
>tr|Q8S9K9|Q8S9K9_ARATH AT4g03420/F9H3_4 OS=Arabidopsis thaliana GN=At4g03420 PE=2 SV=1 Length = 310
Score = 72.8 bits (177), Expect = 2e-11 Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 2/72 (2%) Frame = +1
Query: 403 SNLHHFLQHTTPRVPSQSLSKSRLRGLSA-QGSMDCEK-NFFSLNDLWDSFDEWSAYGAG 576 SNL FL TTP VP QSLSK+ +R L+ + +K FF L+DLWD +DEWSAYGAG Sbjct: 7 SNLDRFLHCTTPVVPPQSLSKAEIRSLNRIWHPWERQKVEFFRLSDLWDCYDEWSAYGAG 66
Query: 577 VPILLNSRETVM 612 VPI L++ E+++ Sbjct: 67 VPIRLSNGESLV 78
>tr|A7PXD4|A7PXD4_VITVI Chromosome chr12 scaffold_36, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025995001 PE=4 SV=1 Length = 304
Score = 71.2 bits (173), Expect = 4e-11 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Frame = +1
Query: 403 SNLHHFLQHTTPRVPSQSLSKSRLRGLSAQGS-MDCEK-NFFSLNDLWDSFDEWSAYGAG 576 SNL FL+ TP V SQ L K+ +R L+ + EK +F+L DLW+ FDEWSAYGAG Sbjct: 10 SNLECFLECITPVVQSQFLHKTEIRDLNVLWHPWEREKVEYFTLGDLWNCFDEWSAYGAG 69
Query: 577 VPILLNSRETVM 612 VPILLN+ ET++ Sbjct: 70 VPILLNNNETLV 81
>tr|Q9ZU41|Q9ZU41_ARATH Predicted by genscan and genefinder (Putative uncharacterized protein At2g01260) (At2g01260) OS=Arabidopsis thaliana GN=At2g01260 PE=2 SV=2 Length = 369
Score = 70.9 bits (172), Expect = 6e-11 Identities = 34/67 (50%), Positives = 44/67 (65%) Frame = +1
Query: 403 SNLHHFLQHTTPRVPSQSLSKSRLRGLSAQGSMDCEKNFFSLNDLWDSFDEWSAYGAGVP 582 SNL FL+ TP VP+Q LSK+ LR A + +F L D+WDSF EWSAYG GVP Sbjct: 64 SNLDRFLESVTPSVPAQFLSKTLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVP 123
Query: 583 ILLNSRE 603 ++LN+ + Sbjct: 124 LVLNNNK 130
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