BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955867|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D22, 5'
         (591 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UFK8|FRMD8_MOUSE FERM domain-containing protein 8 OS=Mus mu...    31   4.1  
sp|Q46VX0|RSMG_RALEJ Ribosomal RNA small subunit methyltransfera...    30   6.9  
sp|Q8NHY0|B4GN2_HUMAN Beta-1,4 N-acetylgalactosaminyltransferase...    26   8.4  
sp|Q5U2R3|FRMD8_RAT FERM domain-containing protein 8 OS=Rattus n...    30   9.1  

>sp|Q3UFK8|FRMD8_MOUSE FERM domain-containing protein 8 OS=Mus
           musculus GN=Frmd8 PE=2 SV=2
          Length = 466

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 223 GHGGLMSTSRGLLKLSRFSANHTDRLPAHHFNRLLGANS*PFYLHCYFHNSGDLLLAGFL 402
           G  GL++  R + +++  ++     L +H+   LL  +  PFY   +FH   D    GFL
Sbjct: 226 GEQGLLNAYRQVKEVTGNNSEREATLGSHYRAYLLKCHELPFYGCAFFHGEVDKPAQGFL 285

Query: 403 RR 408
            R
Sbjct: 286 HR 287


>sp|Q46VX0|RSMG_RALEJ Ribosomal RNA small subunit methyltransferase
           G OS=Ralstonia eutropha (strain JMP134) GN=rsmG PE=3
           SV=1
          Length = 235

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 201 LGLSAAARAWGPYEHFERPSEAFAFLRKPYGSLT 302
           LGLS AA  WGP E  E P +      + +  LT
Sbjct: 137 LGLSNAAAHWGPVERLEDPDKFAVITSRAFAELT 170


>sp|Q8NHY0|B4GN2_HUMAN Beta-1,4 N-acetylgalactosaminyltransferase 2
           OS=Homo sapiens GN=B4GALNT2 PE=2 SV=1
          Length = 566

 Score = 26.2 bits (56), Expect(2) = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 240 HKAPMPELQLRGPDSCSYE 184
           H  P+P LQ  GPD+  YE
Sbjct: 208 HTVPIPGLQFEGPDAPVYE 226



 Score = 22.7 bits (47), Expect(2) = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 278 EKRESFRRPLEVLIRPPCP 222
           ++RE   RPL +L++P  P
Sbjct: 176 QRREGLPRPLPLLVQPNLP 194


>sp|Q5U2R3|FRMD8_RAT FERM domain-containing protein 8 OS=Rattus
           norvegicus GN=Frmd8 PE=2 SV=1
          Length = 466

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 232 GLMSTSRGLLKLSRFSANHTDRLPAHHFNRLLGANS*PFYLHCYFHNSGDLLLAGFLRR 408
           GL++  R + +++   +     L +H+   LL  +  PFY   +FH   D    GFL R
Sbjct: 229 GLLNAYRQVKEMAGGDSERETTLGSHYRAYLLKCHELPFYGCAFFHGEVDKPTQGFLHR 287

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955867|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_D22, 5'
         (591 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ZAQ8|Q5ZAQ8_ORYSJ Putative uncharacterized protein B1143G03...    33   9.2  
tr|Q4P1F1|Q4P1F1_USTMA Putative uncharacterized protein OS=Ustil...    33   9.4  

>tr|Q5ZAQ8|Q5ZAQ8_ORYSJ Putative uncharacterized protein B1143G03.16
           OS=Oryza sativa subsp. japonica GN=B1143G03.16 PE=4 SV=1
          Length = 345

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 27/85 (31%), Positives = 34/85 (40%)
 Frame = -3

Query: 364 NNNVGRKAKNLLREAC*NDELVSDPYGLRRNAKASEGLSKCS*GPHARAAAERPRFLQL* 185
           N  V R  +  L     +  L SDP    R A  S      +  P   A+A  PR     
Sbjct: 189 NQEVARPFEQKLSVTHISPRLTSDPAAKTRTAATSPRRYSTAVSPKLAASATSPRL---- 244

Query: 184 EGGAADERWLPSSYLMRSAIGRARA 110
           EG  A + WLPSS +  +A    RA
Sbjct: 245 EGHMAMQPWLPSSKMSSAANSPPRA 269


>tr|Q4P1F1|Q4P1F1_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM06062.1 PE=4 SV=1
          Length = 925

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +1

Query: 202 WASQLQLGHGGLMSTSRGLLKLSRFSANHTDRLPAHHFNRLL 327
           W S  + G GG MST+   L LS FS  H   LP+   NR L
Sbjct: 698 WRSFSEEGFGG-MSTASSELSLSEFSLGHAQTLPSRRSNRSL 738