DK955870 |
Clone id |
TST39A01NGRL0024_E01 |
Library |
TST39 |
Length |
385 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_E01. 5' end sequence. |
Accession |
DK955870 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL124Contig1 |
Sequence |
ATCAGCCCTACTAAAATCATCATACGTGCCCGTAGCGTCTTACTGGCCGTCGTTTTACAA CGTCGAATTGGAAAAGCGCAGTGTCGAAGATCTGATCACCAATGTTGGCTCTGGTGGAGG TGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGCTGGAGGTGGAGCTGCTGCTCC CCCACCTGTTGAAGAGAAAAAGGAGGAACCCAAGGAAGAAAGCGACGACGATATGGGTTT CAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATAGCCCAATTTTGTAGGGATGAT AGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCTTGGAATTGCCTTGCTATTCAG TAAAAAACCATGATCACTTCTCACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52855 |
Definition |
sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays |
Align length |
84 |
Score (bit) |
46.6 |
E-value |
4.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7R8D5 |
Definition |
tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
84 |
Score (bit) |
57.0 |
E-value |
5.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955870|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_E01, 5' (385 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 57 5e-07 tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 53 7e-06 tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 53 7e-06 tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 52 1e-05 tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 49 1e-04 tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 49 1e-04 tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 49 1e-04 tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 49 2e-04 tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 48 2e-04 tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 48 2e-04 tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 48 3e-04 tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 48 3e-04 tr|B4LTL2|B4LTL2_DROVI GJ17775 OS=Drosophila virilis GN=GJ17775 ... 47 5e-04 tr|B4KFI9|B4KFI9_DROMO GI21657 OS=Drosophila mojavensis GN=GI216... 47 5e-04 tr|B4JDP3|B4JDP3_DROGR GH11223 OS=Drosophila grimshawi GN=GH1122... 47 5e-04 tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 47 6e-04 tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 47 6e-04 tr|Q70YK7|Q70YK7_BOMMO Acidic ribosomal protein P1 OS=Bombyx mor... 47 6e-04 tr|Q5UAU0|Q5UAU0_BOMMO Ribosomal protein P1 OS=Bombyx mori GN=Rp... 47 6e-04 tr|Q6XIN9|Q6XIN9_DROYA RpLP1 (Fragment) OS=Drosophila yakuba GN=... 46 0.001 tr|B4Q638|B4Q638_DROSI GD23023 OS=Drosophila simulans GN=GD23023... 46 0.001 tr|B4ICW8|B4ICW8_DROSE GM16740 OS=Drosophila sechellia GN=GM1674... 46 0.001 tr|B3N7Q2|B3N7Q2_DROER GG24717 OS=Drosophila erecta GN=GG24717 P... 46 0.001 tr|A9PDS2|A9PDS2_POPTR Putative uncharacterized protein OS=Popul... 45 0.001 tr|A8CW94|A8CW94_LUTLO 60S acidic ribosomal protein P1-like prot... 45 0.001 tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 45 0.002 tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 45 0.002 tr|A9P1V9|A9P1V9_PICSI Putative uncharacterized protein OS=Picea... 45 0.002 tr|A9NNL8|A9NNL8_PICSI Putative uncharacterized protein OS=Picea... 45 0.002 tr|Q29N41|Q29N41_DROPS GA17947 OS=Drosophila pseudoobscura pseud... 45 0.002
>tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00011306001 PE=4 SV=1 Length = 111
Score = 57.0 bits (136), Expect = 5e-07 Identities = 33/84 (39%), Positives = 39/84 (46%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 S L+K++ VPV YWP + +EKRS+EDLITNVGS Sbjct: 28 STLVKAANVPVEPYWPLLFAKLVEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAP 87
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 88 PPVEEKKEEPKEESDDDMGFSLFD 111
>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001 PE=4 SV=1 Length = 111
Score = 53.1 bits (126), Expect = 7e-06 Identities = 31/84 (36%), Positives = 39/84 (46%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 + L+K++ V V SYWP+ + +EKR+VEDLI NVGS Sbjct: 28 NTLVKAAKVEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAA 87
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 88 PVVEEKKEEPKEESDDDMGFSLFD 111
>tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018396 PE=4 SV=1 Length = 111
Score = 53.1 bits (126), Expect = 7e-06 Identities = 31/84 (36%), Positives = 39/84 (46%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 + L+K++ V V SYWP+ + +EKR+VEDLI NVGS Sbjct: 28 NTLVKAAKVEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAA 87
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 88 PVVEEKKEEPKEESDDDMGFSLFD 111
>tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000494001 PE=4 SV=1 Length = 111
Score = 52.0 bits (123), Expect = 1e-05 Identities = 31/84 (36%), Positives = 38/84 (45%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 S LLK++ V V SYWP + +EK+SV+DLI NVGS Sbjct: 28 STLLKAANVSVESYWPGLFAKLVEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAA 87
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SD+DMGFSLFD Sbjct: 88 PPPEEKKEEPKEESDEDMGFSLFD 111
>tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_235143 PE=4 SV=1 Length = 110
Score = 49.3 bits (116), Expect = 1e-04 Identities = 32/84 (38%), Positives = 38/84 (45%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 +AL+K++ V V YWPS + EKRSVEDLITNVG Sbjct: 28 AALVKAANVSVEGYWPSLFAKLCEKRSVEDLITNVGG-GGGGAVAMSAAPAAGGAAAAVE 86
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SD+DMGFSLFD Sbjct: 87 APKEVEKEEPKEESDEDMGFSLFD 110
>tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_124329 PE=4 SV=1 Length = 107
Score = 49.3 bits (116), Expect = 1e-04 Identities = 31/84 (36%), Positives = 38/84 (45%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 +AL+K++ V V YWPS + EKRSV+DL+TNVG Sbjct: 28 AALVKAANVSVEGYWPSLFAKLCEKRSVDDLVTNVGG----GGGAVAVSAAPAASAAVEA 83
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 84 PKEEEKKEEPKEESDDDMGFSLFD 107
>tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 113
Score = 48.9 bits (115), Expect = 1e-04 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGS--XXXXXXXXXXXXXXXXXXXXX 175 S L+K++ V + SYWP + +EKR++EDLI+NVGS Sbjct: 28 STLVKAANVQIESYWPGLFAKLMEKRNIEDLISNVGSGGGGASAAVAVAPSGGAGAPAAA 87
Query: 176 XXXXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 88 AAPAAEEKKEEPKEESDDDMGFSLFD 113
>tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_139008 PE=4 SV=1 Length = 110
Score = 48.5 bits (114), Expect = 2e-04 Identities = 31/84 (36%), Positives = 38/84 (45%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 ++L+K++ V V YWPS + EKRSV+DLITNVG Sbjct: 28 ASLVKAANVSVEGYWPSLFAKLCEKRSVDDLITNVGG-GKCGGAAVAVSAAPASSAADEA 86
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 87 PQVEEKKEEPKEESDDDMGFSLFD 110
>tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_164358 PE=4 SV=1 Length = 109
Score = 48.1 bits (113), Expect = 2e-04 Identities = 31/84 (36%), Positives = 37/84 (44%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 +AL+K++ V V YWP + EKRSV+DLITNVG Sbjct: 28 AALVKAANVQVEGYWPGLFAKLCEKRSVDDLITNVGG--GGGGAVAVSAAPAASAAAEAA 85
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 86 PKEEEKKEEPKEESDDDMGFSLFD 109
>tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160947 PE=4 SV=1 Length = 109
Score = 48.1 bits (113), Expect = 2e-04 Identities = 31/84 (36%), Positives = 37/84 (44%) Frame = +2
Query: 2 SALLKSSYVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXX 181 +AL+K++ V V YWP + EKRSV+DLITNVG Sbjct: 28 AALVKAANVQVEGYWPGLFAKLCEKRSVDDLITNVGG--GGGGAVAVSAAPAASAAAEAA 85
Query: 182 XXXXXXXXXXXXXSDDDMGFSLFD 253 SDDDMGFSLFD Sbjct: 86 PKEEEKKEEPKEESDDDMGFSLFD 109
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